Wall clock time and date at job start Sun Mar 29 2020 22:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 115.50077 * 2 1 4 4 C 1.53005 * 117.44593 * 145.40690 * 2 1 3 5 5 H 1.08993 * 118.54421 * 359.97390 * 4 2 1 6 6 C 1.51417 * 116.44820 * 214.24258 * 4 2 1 7 7 O 1.21287 * 120.22679 * 112.37791 * 6 4 2 8 8 N 1.34297 * 119.55392 * 292.40217 * 6 4 2 9 9 C 1.46498 * 118.00729 * 179.97438 * 8 6 4 10 10 C 1.50695 * 109.47474 * 90.01652 * 9 8 6 11 11 H 1.07997 * 119.99752 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00172 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99845 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99901 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47541 * 59.99714 * 14 12 10 16 16 H 1.48499 * 109.47170 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47110 * 299.99803 * 14 12 10 18 18 N 1.38915 * 123.99522 * 359.97438 * 8 6 4 19 19 C 1.34299 * 123.99390 * 0.02562 * 18 8 6 20 20 O 1.21283 * 120.22885 * 179.97438 * 19 18 8 21 21 C 1.51427 * 119.55158 * 359.97438 * 19 18 8 22 22 H 1.09001 * 115.92094 * 214.24141 * 21 19 18 23 23 H 1.09005 * 109.46820 * 274.59383 * 1 2 3 24 24 H 1.08996 * 109.46916 * 34.58935 * 1 2 3 25 25 H 1.09002 * 109.47246 * 154.59631 * 1 2 3 26 26 H 1.08996 * 109.47201 * 205.40401 * 3 2 1 27 27 H 1.09006 * 109.47072 * 325.40852 * 3 2 1 28 28 H 1.08998 * 109.46721 * 85.40273 * 3 2 1 29 29 H 1.09002 * 109.47342 * 210.02283 * 9 8 6 30 30 H 1.09003 * 109.46851 * 330.01393 * 9 8 6 31 31 H 0.96998 * 119.99908 * 180.02562 * 13 12 10 32 32 H 0.97000 * 118.00893 * 179.72213 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1887 1.3809 0.0000 4 6 2.2353 -1.1178 0.7709 5 1 1.6256 -1.8613 1.2842 6 6 3.5407 -0.7521 1.4454 7 8 3.6174 -0.7302 2.6557 8 7 4.6128 -0.4517 0.6946 9 6 5.8582 -0.1023 1.3823 10 6 6.6691 -1.3504 1.6182 11 1 6.2944 -2.3081 1.2885 12 6 7.8894 -1.2696 2.2551 13 7 8.3458 -0.1033 2.6563 14 14 8.8948 -2.8166 2.5469 15 1 9.2118 -3.4542 1.2438 16 1 10.1571 -2.4624 3.2442 17 1 8.1150 -3.7632 3.3843 18 7 4.6130 -0.4521 -0.6946 19 6 3.5408 -0.7525 -1.4455 20 8 3.6175 -0.7309 -2.6557 21 6 2.2354 -1.1183 -0.7710 22 1 1.6258 -1.8619 -1.2843 23 1 -0.3633 0.0823 1.0244 24 1 -0.3633 0.8460 -0.5834 25 1 -0.3634 -0.9283 -0.4409 26 1 3.1830 1.3092 -0.4408 27 1 1.5815 2.0731 -0.5835 28 1 2.2708 1.7443 1.0244 29 1 6.4306 0.5920 0.7671 30 1 5.6260 0.3663 2.3387 31 1 9.2044 -0.0465 3.1040 32 1 5.4365 -0.2170 -1.1501 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601930613.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:30 Heat of formation + Delta-G solvation = -10.356369 kcal Electronic energy + Delta-G solvation = -17431.808144 eV Core-core repulsion = 14587.616184 eV Total energy + Delta-G solvation = -2844.191960 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.08893 -38.36154 -37.22741 -35.81010 -33.09064 -30.80113 -29.83853 -27.78685 -27.26693 -24.75768 -23.63591 -21.97529 -19.62801 -18.06516 -17.17487 -16.96068 -16.68905 -15.52561 -15.00357 -14.73992 -14.49172 -14.11626 -13.87394 -13.55540 -13.02504 -12.76993 -12.41082 -12.38876 -12.28267 -11.63762 -11.40627 -11.28440 -10.82267 -10.74955 -10.46469 -10.37559 -10.12149 -9.74434 -9.59781 -9.18095 -8.60253 -7.52297 -6.21607 -4.28846 2.39641 2.43984 2.76022 3.25222 3.29354 3.33032 3.69841 3.93726 4.26930 4.31912 4.51283 4.74983 4.82283 4.91776 5.13985 5.43389 5.52374 5.70589 5.75236 5.77113 5.81613 5.99469 6.01249 6.20994 6.43955 6.83098 7.13214 7.25181 7.72458 7.93667 8.11475 8.35121 8.68398 8.85221 9.37565 10.85918 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.035050 B = 0.007370 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.656591 B = 3798.406381 C = 4067.284530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.070 4.070 3 C -0.134 4.134 4 C -0.163 4.163 5 H 0.145 0.855 6 C 0.543 3.457 7 O -0.514 6.514 8 N -0.392 5.392 9 C 0.240 3.760 10 C -0.539 4.539 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.891 5.891 14 Si 0.904 3.096 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.274 1.274 18 N -0.498 5.498 19 C 0.546 3.454 20 O -0.539 6.539 21 C -0.168 4.168 22 H 0.145 0.855 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.267 0.733 32 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.418 1.068 -5.342 13.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.072 4.072 3 C -0.191 4.191 4 C -0.184 4.184 5 H 0.162 0.838 6 C 0.329 3.671 7 O -0.387 6.387 8 N -0.218 5.218 9 C 0.122 3.878 10 C -0.578 4.578 11 H 0.080 0.920 12 C -0.137 4.137 13 N -0.529 5.529 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.200 1.200 18 N -0.245 5.245 19 C 0.332 3.668 20 O -0.414 6.414 21 C -0.189 4.189 22 H 0.163 0.837 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -12.357 1.134 -5.127 13.427 hybrid contribution 1.105 -0.953 0.007 1.459 sum -11.253 0.181 -5.121 12.364 Atomic orbital electron populations 1.21396 0.90276 1.02683 1.02733 1.21575 0.95598 0.90891 0.99134 1.21619 1.00888 0.93381 1.03173 1.23289 0.98667 1.04016 0.92435 0.83761 1.19071 0.82943 0.78425 0.86664 1.90767 1.82978 1.52764 1.12169 1.47687 1.14591 1.67432 0.92134 1.19810 0.77523 0.97184 0.93238 1.21328 1.03330 0.93530 1.39594 0.92046 1.24915 0.97317 0.96666 0.94814 1.69901 1.20315 1.23669 1.39004 0.86462 0.79123 0.82788 0.78550 1.20105 1.20995 1.19986 1.45051 1.14795 1.68518 0.96159 1.19398 0.84078 0.76962 0.86313 1.90772 1.83587 1.54691 1.12396 1.23243 0.97731 1.04539 0.93393 0.83705 0.91186 0.91345 0.91773 0.91535 0.91197 0.91052 0.94067 0.91457 0.92292 0.73433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.84 37.16 0.37 -0.67 16 2 C -0.07 -0.89 2.67 -154.48 -0.41 -1.30 16 3 C -0.13 -1.76 8.60 37.16 0.32 -1.45 16 4 C -0.16 -2.45 6.17 -90.80 -0.56 -3.01 16 5 H 0.14 1.87 8.14 -51.93 -0.42 1.45 16 6 C 0.54 10.98 6.54 -10.85 -0.07 10.91 16 7 O -0.51 -12.29 16.50 5.55 0.09 -12.20 16 8 N -0.39 -8.06 3.03 -61.33 -0.19 -8.24 16 9 C 0.24 5.85 5.17 -5.20 -0.03 5.82 16 10 C -0.54 -14.56 9.38 -34.44 -0.32 -14.89 16 11 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 12 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 13 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 14 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 N -0.50 -8.96 5.21 31.33 0.16 -8.80 16 19 C 0.55 9.28 6.43 -10.84 -0.07 9.21 16 20 O -0.54 -10.27 17.92 5.55 0.10 -10.17 16 21 C -0.17 -2.35 6.08 -90.77 -0.55 -2.90 16 22 H 0.15 1.68 8.09 -51.93 -0.42 1.26 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.55 7.93 -51.93 -0.41 0.13 16 25 H 0.06 0.50 7.93 -51.93 -0.41 0.09 16 26 H 0.07 1.00 5.18 -51.93 -0.27 0.73 16 27 H 0.07 0.76 7.93 -51.93 -0.41 0.35 16 28 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 29 H 0.04 0.99 8.03 -51.93 -0.42 0.58 16 30 H 0.07 1.81 7.27 -51.93 -0.38 1.44 16 31 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 32 H 0.42 7.30 8.54 -183.48 -1.57 5.73 16 LS Contribution 274.59 15.07 4.14 4.14 Total: -1.00 -31.15 274.59 -6.50 -37.66 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.10 Total: 2.42 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -1.43 Total: 3.45 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.71 Total: -41.47 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: 0.19 Total: -22.37 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.15 -6.50 -37.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601930613.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.300 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds