Wall clock time and date at job start Sun Mar 29 2020 22:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 115.50077 * 2 1 4 4 C 1.53005 * 117.44593 * 145.40690 * 2 1 3 5 5 H 1.08993 * 118.54421 * 359.97390 * 4 2 1 6 6 C 1.51417 * 116.44820 * 214.24258 * 4 2 1 7 7 O 1.21287 * 120.22679 * 112.37791 * 6 4 2 8 8 N 1.34297 * 119.55392 * 292.40217 * 6 4 2 9 9 C 1.46498 * 118.00729 * 179.97438 * 8 6 4 10 10 C 1.50695 * 109.47474 * 90.01652 * 9 8 6 11 11 H 1.07997 * 119.99752 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00172 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99845 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99901 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47541 * 59.99714 * 14 12 10 16 16 H 1.48499 * 109.47170 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47110 * 299.99803 * 14 12 10 18 18 N 1.38915 * 123.99522 * 359.97438 * 8 6 4 19 19 C 1.34299 * 123.99390 * 0.02562 * 18 8 6 20 20 O 1.21283 * 120.22885 * 179.97438 * 19 18 8 21 21 C 1.51427 * 119.55158 * 359.97438 * 19 18 8 22 22 H 1.09001 * 115.92094 * 214.24141 * 21 19 18 23 23 H 1.09005 * 109.46820 * 274.59383 * 1 2 3 24 24 H 1.08996 * 109.46916 * 34.58935 * 1 2 3 25 25 H 1.09002 * 109.47246 * 154.59631 * 1 2 3 26 26 H 1.08996 * 109.47201 * 205.40401 * 3 2 1 27 27 H 1.09006 * 109.47072 * 325.40852 * 3 2 1 28 28 H 1.08998 * 109.46721 * 85.40273 * 3 2 1 29 29 H 1.09002 * 109.47342 * 210.02283 * 9 8 6 30 30 H 1.09003 * 109.46851 * 330.01393 * 9 8 6 31 31 H 0.96998 * 119.99908 * 180.02562 * 13 12 10 32 32 H 0.97000 * 118.00893 * 179.72213 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1887 1.3809 0.0000 4 6 2.2353 -1.1178 0.7709 5 1 1.6256 -1.8613 1.2842 6 6 3.5407 -0.7521 1.4454 7 8 3.6174 -0.7302 2.6557 8 7 4.6128 -0.4517 0.6946 9 6 5.8582 -0.1023 1.3823 10 6 6.6691 -1.3504 1.6182 11 1 6.2944 -2.3081 1.2885 12 6 7.8894 -1.2696 2.2551 13 7 8.3458 -0.1033 2.6563 14 14 8.8948 -2.8166 2.5469 15 1 9.2118 -3.4542 1.2438 16 1 10.1571 -2.4624 3.2442 17 1 8.1150 -3.7632 3.3843 18 7 4.6130 -0.4521 -0.6946 19 6 3.5408 -0.7525 -1.4455 20 8 3.6175 -0.7309 -2.6557 21 6 2.2354 -1.1183 -0.7710 22 1 1.6258 -1.8619 -1.2843 23 1 -0.3633 0.0823 1.0244 24 1 -0.3633 0.8460 -0.5834 25 1 -0.3634 -0.9283 -0.4409 26 1 3.1830 1.3092 -0.4408 27 1 1.5815 2.0731 -0.5835 28 1 2.2708 1.7443 1.0244 29 1 6.4306 0.5920 0.7671 30 1 5.6260 0.3663 2.3387 31 1 9.2044 -0.0465 3.1040 32 1 5.4365 -0.2170 -1.1501 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601930613.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:29 Heat of formation + Delta-G solvation = -31.826163 kcal Electronic energy + Delta-G solvation = -17432.739144 eV Core-core repulsion = 14587.616184 eV Total energy + Delta-G solvation = -2845.122960 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.47826 -39.93105 -38.49956 -37.45782 -35.11022 -32.50290 -30.91913 -29.29125 -28.52095 -26.23713 -25.25208 -23.66461 -20.85707 -19.46685 -18.87408 -18.54802 -18.31944 -16.96424 -16.77649 -16.24167 -15.91809 -15.63955 -15.17238 -15.02268 -14.40010 -14.15710 -13.79793 -13.60344 -13.46949 -13.15734 -13.12296 -12.69154 -12.53924 -12.32408 -12.25359 -11.67133 -11.54010 -11.36277 -11.08809 -10.72792 -10.64616 -9.20358 -8.30350 -6.46670 0.82699 1.07855 1.32054 1.37973 1.39557 1.47999 2.30141 2.37724 2.67163 3.00267 3.10330 3.43313 3.51707 3.67892 3.96655 4.33135 4.58911 4.60012 4.67491 4.80811 4.83406 4.93932 4.98674 5.02196 5.14709 5.16483 5.37769 5.51758 5.69896 5.86309 6.58352 6.67111 6.74929 7.18539 7.30122 8.75791 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.035050 B = 0.007370 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.656591 B = 3798.406381 C = 4067.284530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.049 4.049 3 C -0.140 4.140 4 C -0.172 4.172 5 H 0.171 0.829 6 C 0.534 3.466 7 O -0.561 6.561 8 N -0.395 5.395 9 C 0.254 3.746 10 C -0.555 4.555 11 H 0.053 0.947 12 C 0.018 3.982 13 N -0.920 5.920 14 Si 0.967 3.033 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.275 1.275 18 N -0.498 5.498 19 C 0.547 3.453 20 O -0.557 6.557 21 C -0.163 4.163 22 H 0.180 0.820 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.038 0.962 30 H 0.034 0.966 31 H 0.271 0.729 32 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.242 0.088 -6.372 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.050 4.050 3 C -0.197 4.197 4 C -0.193 4.193 5 H 0.189 0.811 6 C 0.323 3.677 7 O -0.438 6.438 8 N -0.219 5.219 9 C 0.135 3.865 10 C -0.593 4.593 11 H 0.072 0.928 12 C -0.183 4.183 13 N -0.559 5.559 14 Si 0.791 3.209 15 H -0.190 1.190 16 H -0.200 1.200 17 H -0.201 1.201 18 N -0.246 5.246 19 C 0.335 3.665 20 O -0.434 6.434 21 C -0.183 4.183 22 H 0.198 0.802 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -14.207 0.155 -6.188 15.497 hybrid contribution 1.675 -0.572 0.292 1.794 sum -12.532 -0.417 -5.896 13.856 Atomic orbital electron populations 1.21485 0.86701 1.04602 1.03909 1.21848 0.97811 0.89417 0.95959 1.21687 1.00367 0.94817 1.02810 1.23265 0.96387 1.06674 0.92927 0.81146 1.20039 0.84256 0.77098 0.86347 1.90727 1.83946 1.54725 1.14380 1.47437 1.13704 1.67381 0.93368 1.19291 0.78837 0.96156 0.92241 1.21564 1.04001 0.93896 1.39860 0.92842 1.25753 0.98396 0.99705 0.94406 1.69998 1.20816 1.25549 1.39507 0.85468 0.77686 0.78951 0.78749 1.19032 1.20048 1.20081 1.45095 1.15605 1.69114 0.94778 1.19961 0.84599 0.75862 0.86058 1.90766 1.83903 1.55486 1.13210 1.23437 0.96471 1.06195 0.92221 0.80240 0.90321 0.89712 0.89692 0.93905 0.88381 0.92133 0.94435 0.94801 0.91992 0.73579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.84 71.98 0.71 -0.77 16 2 C -0.05 -1.08 2.67 -52.16 -0.14 -1.22 16 3 C -0.14 -3.48 8.60 71.98 0.62 -2.86 16 4 C -0.17 -4.81 6.17 -10.91 -0.07 -4.88 16 5 H 0.17 3.90 8.14 -2.39 -0.02 3.88 16 6 C 0.53 21.84 6.54 87.96 0.58 22.42 16 7 O -0.56 -27.78 16.50 -3.05 -0.05 -27.83 16 8 N -0.39 -16.64 3.03 -466.60 -1.42 -18.06 16 9 C 0.25 12.97 5.17 85.63 0.44 13.42 16 10 C -0.55 -30.76 9.38 25.60 0.24 -30.52 16 11 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 12 C 0.02 1.00 5.46 84.66 0.46 1.46 16 13 N -0.92 -53.03 13.29 21.45 0.28 -52.75 16 14 Si 0.97 43.64 29.54 68.60 2.03 45.66 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 N -0.50 -18.08 5.21 -173.46 -0.90 -18.98 16 19 C 0.55 17.89 6.43 87.96 0.57 18.46 16 20 O -0.56 -20.43 17.92 -3.04 -0.05 -20.48 16 21 C -0.16 -4.06 6.08 -10.89 -0.07 -4.13 16 22 H 0.18 3.30 8.09 -2.39 -0.02 3.28 16 23 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.08 0.92 7.93 -2.39 -0.02 0.90 16 25 H 0.08 0.85 7.93 -2.39 -0.02 0.83 16 26 H 0.04 1.27 5.18 -2.39 -0.01 1.25 16 27 H 0.10 1.86 7.93 -2.38 -0.02 1.84 16 28 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 29 H 0.04 1.91 8.03 -2.39 -0.02 1.89 16 30 H 0.03 1.95 7.27 -2.39 -0.02 1.93 16 31 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.42 14.95 8.54 -214.07 -1.83 13.12 16 Total: -1.00 -68.93 274.59 2.54 -66.38 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -0.68 Total: 14.68 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 3.34 Total: 11.37 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -2.03 Total: -89.79 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -0.10 Total: -48.31 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -68.93 2.54 -66.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601930613.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.557 kcal (2) G-P(sol) polarization free energy of solvation -68.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds