Wall clock time and date at job start Sun Mar 29 2020 22:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 N 1.39142 * 124.44091 * 269.70036 * 10 9 7 12 12 C 1.27569 * 113.16700 * 179.76611 * 11 10 9 13 13 C 1.50699 * 126.42026 * 180.22142 * 12 11 10 14 14 H 1.09005 * 110.75688 * 234.59818 * 13 12 11 15 15 C 1.55307 * 110.84651 * 358.06738 * 13 12 11 16 16 C 1.55205 * 100.82670 * 152.17968 * 15 13 12 17 17 O 1.43649 * 105.26029 * 323.81719 * 16 15 13 18 18 C 1.43235 * 109.96889 * 24.28662 * 17 16 15 19 19 C 1.51437 * 107.16719 * 0.47336 * 12 11 10 20 20 C 1.34962 * 124.43831 * 90.00219 * 10 9 7 21 21 O 1.21295 * 127.49967 * 359.97396 * 20 10 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.08999 * 111.12471 * 270.24407 * 15 13 12 26 26 H 1.08995 * 111.12614 * 34.40316 * 15 13 12 27 27 H 1.08999 * 110.36944 * 204.79743 * 16 15 13 28 28 H 1.09002 * 110.12904 * 82.71165 * 16 15 13 29 29 H 1.09001 * 109.83010 * 238.77437 * 18 17 16 30 30 H 1.08994 * 109.90763 * 117.84635 * 18 17 16 31 31 H 1.09004 * 110.61027 * 241.20562 * 19 12 11 32 32 H 1.09001 * 110.61569 * 118.22994 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.7098 -4.2147 -1.1480 12 6 3.5274 -5.1617 -0.8987 13 6 4.2522 -6.0083 -1.9130 14 1 4.0695 -7.0678 -1.7333 15 6 3.8404 -5.6139 -3.3576 16 6 5.1210 -6.0042 -4.1427 17 8 6.2134 -5.6913 -3.2639 18 6 5.7653 -5.7025 -1.9035 19 6 3.6284 -5.2800 0.6077 20 6 2.6989 -4.1928 1.1125 21 8 2.4549 -3.9067 2.2657 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.9790 -6.1920 -3.6923 26 1 3.6461 -4.5440 -3.4324 27 1 5.1954 -5.4217 -5.0610 28 1 5.1115 -7.0703 -4.3698 29 1 5.9427 -4.7283 -1.4478 30 1 6.2950 -6.4739 -1.3446 31 1 4.6502 -5.0955 0.9394 32 1 3.2874 -6.2607 0.9394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601932957.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:21 Heat of formation + Delta-G solvation = -29.202306 kcal Electronic energy + Delta-G solvation = -16783.571379 eV Core-core repulsion = 13938.562198 eV Total energy + Delta-G solvation = -2845.009181 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73577 -39.23705 -36.78061 -34.02364 -32.75817 -31.05551 -29.43052 -28.75158 -26.88470 -23.49507 -22.70634 -22.08308 -20.43342 -18.68703 -16.96219 -16.74157 -16.32026 -15.73197 -15.37897 -14.98037 -14.50472 -14.34236 -14.02064 -13.46934 -13.22397 -12.74696 -12.45564 -12.06403 -11.81267 -11.55320 -11.45980 -11.29819 -11.10460 -10.86820 -10.75850 -10.52006 -10.13686 -9.68813 -9.62875 -9.14709 -8.54187 -7.88894 -6.16440 -4.22352 1.95785 3.11147 3.28175 3.28650 3.31808 3.36978 3.72080 4.11495 4.19552 4.37017 4.55781 4.81896 4.93637 5.08272 5.15346 5.17301 5.20468 5.40943 5.56786 5.63164 5.69172 5.83524 5.88459 6.14855 6.34510 6.85152 7.03436 7.15207 7.26136 7.78055 8.01974 8.35513 8.53971 8.81807 9.42698 10.91921 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.006635 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.203180 B = 4218.963036 C = 4773.197894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.059 0.941 9 C 0.266 3.734 10 N -0.440 5.440 11 N -0.201 5.201 12 C 0.049 3.951 13 C -0.037 4.037 14 H 0.107 0.893 15 C -0.148 4.148 16 C 0.050 3.950 17 O -0.383 6.383 18 C 0.061 3.939 19 C -0.172 4.172 20 C 0.491 3.509 21 O -0.505 6.505 22 H 0.267 0.733 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.631 -13.949 -6.157 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.077 0.923 9 C 0.149 3.851 10 N -0.260 5.260 11 N -0.009 5.009 12 C -0.144 4.144 13 C -0.058 4.058 14 H 0.125 0.875 15 C -0.186 4.186 16 C -0.026 4.026 17 O -0.302 6.302 18 C -0.016 4.016 19 C -0.214 4.214 20 C 0.277 3.723 21 O -0.379 6.379 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.896 -12.900 -6.213 16.351 hybrid contribution 0.449 0.569 0.787 1.070 sum 8.345 -12.330 -5.426 15.847 Atomic orbital electron populations 1.69913 1.06018 1.27568 1.49647 1.24919 0.94966 0.99354 0.94613 0.86452 0.79493 0.82112 0.78819 1.20925 1.20043 1.20013 1.21310 0.93485 0.90232 1.52309 0.92282 1.19483 0.86037 0.80265 0.99300 1.50477 1.42468 1.32563 1.00480 1.74476 1.07199 1.05258 1.13924 1.24483 0.98956 0.97211 0.93726 1.21107 0.93865 0.98370 0.92444 0.87509 1.23351 0.98263 1.04605 0.92362 1.23456 0.85214 0.99961 0.93974 1.88413 1.33960 1.92073 1.15784 1.23135 0.91951 1.02276 0.84272 1.22070 1.03100 1.01698 0.94488 1.21167 0.81736 0.83414 0.85998 1.90728 1.62202 1.67244 1.17695 0.92333 0.93013 0.93403 0.89335 0.88565 0.89515 0.92129 0.90700 0.90656 0.85855 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -15.49 9.39 -34.44 -0.32 -15.81 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.27 7.17 5.99 -5.20 -0.03 7.14 16 10 N -0.44 -10.12 3.52 -61.06 -0.22 -10.33 16 11 N -0.20 -3.88 11.05 35.53 0.39 -3.49 16 12 C 0.05 0.72 6.46 -78.73 -0.51 0.21 16 13 C -0.04 -0.39 3.51 -89.83 -0.32 -0.71 16 14 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 15 C -0.15 -1.57 6.43 -24.34 -0.16 -1.73 16 16 C 0.05 0.48 7.78 38.33 0.30 0.78 16 17 O -0.38 -4.64 11.36 -35.23 -0.40 -5.04 16 18 C 0.06 0.65 7.40 37.88 0.28 0.93 16 19 C -0.17 -2.47 6.93 -28.19 -0.20 -2.67 16 20 C 0.49 10.51 8.43 -10.42 -0.09 10.42 16 21 O -0.51 -12.55 17.81 5.54 0.10 -12.45 16 22 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.05 1.49 8.04 -51.92 -0.42 1.08 16 24 H 0.05 1.32 8.14 -51.93 -0.42 0.89 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.10 1.28 7.53 -51.93 -0.39 0.89 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.89 7.81 -51.93 -0.41 0.48 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 280.30 15.07 4.22 4.22 Total: -1.00 -33.60 280.30 -5.46 -39.06 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: -4.14 Total: -3.60 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.14 Total: 0.30 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.91 Total: -39.46 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.30 Total: -17.49 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.60 -5.46 -39.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932957.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.855 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds