Wall clock time and date at job start Sun Mar 29 2020 22:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 N 1.39142 * 124.44091 * 269.70036 * 10 9 7 12 12 C 1.27569 * 113.16700 * 179.76611 * 11 10 9 13 13 C 1.50699 * 126.42026 * 180.22142 * 12 11 10 14 14 H 1.09005 * 110.75688 * 234.59818 * 13 12 11 15 15 C 1.55307 * 110.84651 * 358.06738 * 13 12 11 16 16 C 1.55205 * 100.82670 * 152.17968 * 15 13 12 17 17 O 1.43649 * 105.26029 * 323.81719 * 16 15 13 18 18 C 1.43235 * 109.96889 * 24.28662 * 17 16 15 19 19 C 1.51437 * 107.16719 * 0.47336 * 12 11 10 20 20 C 1.34962 * 124.43831 * 90.00219 * 10 9 7 21 21 O 1.21295 * 127.49967 * 359.97396 * 20 10 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 24 24 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 25 25 H 1.08999 * 111.12471 * 270.24407 * 15 13 12 26 26 H 1.08995 * 111.12614 * 34.40316 * 15 13 12 27 27 H 1.08999 * 110.36944 * 204.79743 * 16 15 13 28 28 H 1.09002 * 110.12904 * 82.71165 * 16 15 13 29 29 H 1.09001 * 109.83010 * 238.77437 * 18 17 16 30 30 H 1.08994 * 109.90763 * 117.84635 * 18 17 16 31 31 H 1.09004 * 110.61027 * 241.20562 * 19 12 11 32 32 H 1.09001 * 110.61569 * 118.22994 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.7098 -4.2147 -1.1480 12 6 3.5274 -5.1617 -0.8987 13 6 4.2522 -6.0083 -1.9130 14 1 4.0695 -7.0678 -1.7333 15 6 3.8404 -5.6139 -3.3576 16 6 5.1210 -6.0042 -4.1427 17 8 6.2134 -5.6913 -3.2639 18 6 5.7653 -5.7025 -1.9035 19 6 3.6284 -5.2800 0.6077 20 6 2.6989 -4.1928 1.1125 21 8 2.4549 -3.9067 2.2657 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5571 0.8897 24 1 0.6240 -2.5568 -0.8903 25 1 2.9790 -6.1920 -3.6923 26 1 3.6461 -4.5440 -3.4324 27 1 5.1954 -5.4217 -5.0610 28 1 5.1115 -7.0703 -4.3698 29 1 5.9427 -4.7283 -1.4478 30 1 6.2950 -6.4739 -1.3446 31 1 4.6502 -5.0955 0.9394 32 1 3.2874 -6.2607 0.9394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601932957.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:21 Heat of formation + Delta-G solvation = -54.325608 kcal Electronic energy + Delta-G solvation = -16784.660807 eV Core-core repulsion = 13938.562198 eV Total energy + Delta-G solvation = -2846.098609 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.18194 -40.18356 -38.38899 -35.85647 -34.35291 -32.45566 -30.50915 -30.04278 -28.72207 -25.28243 -23.88349 -23.04066 -21.85487 -20.07526 -18.89777 -18.04555 -17.54422 -17.05237 -16.91548 -16.34304 -16.06678 -15.59830 -15.37365 -14.65712 -14.58218 -14.17797 -13.96327 -13.68247 -13.43634 -12.97528 -12.80809 -12.72703 -12.48834 -12.27938 -12.24077 -11.92218 -11.68350 -11.64331 -10.81632 -10.66391 -10.40777 -9.61960 -8.35876 -6.52534 0.65402 1.31306 1.35860 1.42632 1.56975 1.71848 2.31187 2.73425 2.92146 2.99558 3.14266 3.50398 3.97359 4.02049 4.17447 4.27219 4.35132 4.42852 4.60434 4.74382 4.85384 4.88829 4.93873 4.99271 5.05855 5.26611 5.31522 5.41971 5.60300 5.82992 6.08579 6.50958 6.76185 6.99660 7.18948 8.72071 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.006635 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.203180 B = 4218.963036 C = 4773.197894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.557 4.557 8 H 0.049 0.951 9 C 0.282 3.718 10 N -0.463 5.463 11 N -0.255 5.255 12 C 0.097 3.903 13 C -0.034 4.034 14 H 0.157 0.843 15 C -0.152 4.152 16 C 0.052 3.948 17 O -0.406 6.406 18 C 0.062 3.938 19 C -0.154 4.154 20 C 0.468 3.532 21 O -0.559 6.559 22 H 0.273 0.727 23 H 0.017 0.983 24 H 0.029 0.971 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.112 0.888 31 H 0.158 0.842 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.844 -15.896 -6.970 20.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.595 4.595 8 H 0.067 0.933 9 C 0.163 3.837 10 N -0.280 5.280 11 N -0.062 5.062 12 C -0.096 4.096 13 C -0.054 4.054 14 H 0.174 0.826 15 C -0.190 4.190 16 C -0.024 4.024 17 O -0.326 6.326 18 C -0.016 4.016 19 C -0.195 4.195 20 C 0.257 3.743 21 O -0.437 6.437 22 H 0.082 0.918 23 H 0.035 0.965 24 H 0.047 0.953 25 H 0.124 0.876 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.129 0.871 31 H 0.176 0.824 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 10.120 -14.874 -7.066 19.329 hybrid contribution -0.183 1.037 0.957 1.423 sum 9.937 -13.837 -6.110 18.098 Atomic orbital electron populations 1.70019 1.07497 1.28853 1.49769 1.25873 0.95947 1.03105 0.93709 0.85379 0.78372 0.77525 0.79049 1.19406 1.19770 1.18964 1.21533 0.93121 0.91709 1.53156 0.93300 1.18827 0.86560 0.81754 0.96602 1.50319 1.42684 1.32422 1.02616 1.74598 1.11119 1.08366 1.12088 1.25436 0.95023 0.94155 0.95023 1.21481 0.93353 0.99842 0.90721 0.82580 1.23350 0.99762 1.02743 0.93132 1.23586 0.83640 1.01757 0.93398 1.88396 1.35068 1.92480 1.16643 1.23212 0.91815 1.02506 0.84054 1.22174 1.02877 1.00858 0.93578 1.22344 0.82266 0.84629 0.85050 1.90677 1.64298 1.69248 1.19441 0.91807 0.96493 0.95323 0.87601 0.92153 0.89450 0.89110 0.92786 0.87057 0.82433 0.81182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.24 13.29 21.45 0.28 -55.96 16 2 C 0.01 0.82 5.46 84.66 0.46 1.28 16 3 Si 0.97 45.73 29.54 68.60 2.03 47.76 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.56 -33.74 9.39 25.60 0.24 -33.50 16 8 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 9 C 0.28 16.22 5.99 85.63 0.51 16.74 16 10 N -0.46 -22.10 3.52 -465.38 -1.64 -23.74 16 11 N -0.26 -9.89 11.05 -40.85 -0.45 -10.34 16 12 C 0.10 2.55 6.46 46.83 0.30 2.85 16 13 C -0.03 -0.56 3.51 -10.28 -0.04 -0.60 16 14 H 0.16 1.27 8.14 -2.38 -0.02 1.25 16 15 C -0.15 -2.84 6.43 32.14 0.21 -2.64 16 16 C 0.05 0.82 7.78 72.74 0.57 1.39 16 17 O -0.41 -8.55 11.36 -148.98 -1.69 -10.24 16 18 C 0.06 1.05 7.40 72.45 0.54 1.58 16 19 C -0.15 -3.94 6.93 29.65 0.21 -3.73 16 20 C 0.47 20.31 8.43 87.94 0.74 21.05 16 21 O -0.56 -28.85 17.81 -3.08 -0.05 -28.91 16 22 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 23 H 0.02 1.07 8.04 -2.38 -0.02 1.05 16 24 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.59 7.53 -2.39 -0.02 1.57 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 1.14 7.81 -2.39 -0.02 1.12 16 30 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.16 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.17 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -79.42 280.30 3.33 -76.09 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: 1.12 Total: 0.91 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 3.74 Total: 4.42 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -1.81 Total: -90.04 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -1.75 Total: -39.15 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -79.42 3.33 -76.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601932957.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.769 kcal (2) G-P(sol) polarization free energy of solvation -79.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds