Wall clock time and date at job start Sun Mar 29 2020 22:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30173 * 126.79905 * 2 1 4 4 O 1.20921 * 111.60761 * 179.97438 * 3 2 1 5 5 C 1.34043 * 111.56080 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.77453 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44954 * 359.74996 * 5 4 3 8 8 C 1.50696 * 128.00853 * 180.23586 * 7 5 4 9 9 H 1.08995 * 109.47151 * 180.16312 * 8 7 5 10 10 C 1.52999 * 109.47128 * 60.16319 * 8 7 5 11 11 C 1.50698 * 109.47139 * 300.16549 * 8 7 5 12 12 O 1.21300 * 120.00102 * 0.02562 * 11 8 7 13 13 N 1.34777 * 120.00402 * 179.97438 * 11 8 7 14 14 C 1.37088 * 120.00438 * 179.97438 * 13 11 8 15 15 H 1.08000 * 120.00311 * 0.02562 * 14 13 11 16 16 C 1.38954 * 120.00191 * 180.02562 * 14 13 11 17 17 N 1.31407 * 119.99871 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00050 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47435 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47196 * 120.00065 * 18 16 14 21 21 H 1.48497 * 109.47213 * 240.00099 * 18 16 14 22 22 H 1.08999 * 109.46995 * 90.02638 * 1 2 3 23 23 H 1.08994 * 109.46790 * 210.02325 * 1 2 3 24 24 H 1.08997 * 109.47305 * 330.02766 * 1 2 3 25 25 H 1.09002 * 109.47213 * 359.97438 * 6 5 4 26 26 H 1.09003 * 109.47326 * 119.97359 * 6 5 4 27 27 H 1.09001 * 109.47446 * 239.97671 * 6 5 4 28 28 H 1.09007 * 109.47436 * 179.97438 * 10 8 7 29 29 H 1.09005 * 109.47571 * 300.00278 * 10 8 7 30 30 H 1.09000 * 109.47180 * 60.00297 * 10 8 7 31 31 H 0.97006 * 119.99154 * 359.97438 * 13 11 8 32 32 H 0.97002 * 120.00302 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7255 0.0005 5 6 3.6025 -0.6067 0.0015 6 6 4.9022 -1.3694 0.0029 7 6 2.3540 -1.1320 0.0072 8 6 1.9592 -2.5863 0.0154 9 1 0.8722 -2.6677 0.0156 10 6 2.5213 -3.2603 1.2687 11 6 2.5135 -3.2642 -1.2110 12 8 3.1655 -2.6290 -2.0127 13 7 2.2857 -4.5766 -1.4166 14 6 2.7895 -5.1932 -2.5325 15 1 3.3693 -4.6275 -3.2468 16 6 2.5542 -6.5461 -2.7448 17 7 1.8482 -7.2344 -1.8760 18 14 3.2413 -7.3864 -4.2650 19 1 3.9940 -6.3986 -5.0791 20 1 4.1510 -8.4860 -3.8542 21 1 2.1246 -7.9427 -5.0705 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3634 0.8902 0.5134 25 1 5.7357 -0.6670 0.0025 26 1 4.9552 -1.9955 0.8935 27 1 4.9560 -1.9974 -0.8865 28 1 2.2353 -4.3121 1.2749 29 1 3.6083 -3.1789 1.2686 30 1 2.1203 -2.7699 2.1558 31 1 1.7652 -5.0848 -0.7749 32 1 1.6836 -8.1788 -2.0243 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604548762.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:02 Heat of formation + Delta-G solvation = 6.977390 kcal Electronic energy + Delta-G solvation = -17185.752525 eV Core-core repulsion = 14342.312214 eV Total energy + Delta-G solvation = -2843.440312 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.49420 -38.60683 -35.23581 -33.97609 -33.38107 -31.73176 -30.61465 -28.38579 -27.40398 -25.26110 -24.00374 -21.53671 -20.05056 -18.73148 -17.93367 -17.24404 -16.57232 -15.78560 -14.73947 -14.52170 -14.13168 -13.63167 -13.29671 -13.12022 -13.07032 -12.79034 -12.57904 -12.43236 -11.98818 -11.77740 -11.65432 -11.50170 -11.12359 -10.84902 -10.49430 -10.38068 -10.25354 -9.56275 -9.49409 -8.68878 -8.32780 -8.01304 -6.47124 -3.87924 1.91510 2.60017 3.12514 3.24037 3.30835 3.52671 3.83610 4.13915 4.50994 4.79290 4.93533 5.16453 5.21635 5.39045 5.51636 5.57876 5.65606 5.69431 5.80222 5.81375 5.95954 6.06223 6.13655 6.20151 6.38221 6.42757 6.49956 6.66017 7.50505 8.00389 8.55012 8.66477 9.12288 9.48574 9.99377 10.70410 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037042 B = 0.006461 C = 0.006204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.714977 B = 4332.349885 C = 4512.195588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.022 3.978 3 N -0.380 5.380 4 O 0.085 5.915 5 C 0.001 3.999 6 C -0.079 4.079 7 C -0.171 4.171 8 C -0.027 4.027 9 H 0.092 0.908 10 C -0.142 4.142 11 C 0.446 3.554 12 O -0.587 6.587 13 N -0.558 5.558 14 C -0.300 4.300 15 H 0.104 0.896 16 C 0.024 3.976 17 N -0.900 5.900 18 Si 0.928 3.072 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.281 1.281 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.393 0.607 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 6.781 7.005 9.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.136 4.136 3 N -0.089 5.089 4 O 0.022 5.978 5 C -0.062 4.062 6 C -0.137 4.137 7 C -0.176 4.176 8 C -0.049 4.049 9 H 0.110 0.890 10 C -0.200 4.200 11 C 0.232 3.768 12 O -0.472 6.472 13 N -0.193 5.193 14 C -0.430 4.430 15 H 0.122 0.878 16 C -0.178 4.178 17 N -0.541 5.541 18 Si 0.755 3.245 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.207 1.207 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.130 0.870 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.226 0.774 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.020 8.312 6.455 10.524 hybrid contribution -0.217 -1.628 -0.433 1.698 sum -0.198 6.684 6.022 8.999 Atomic orbital electron populations 1.20128 0.86467 1.03198 1.03295 1.23332 0.98576 0.88802 1.02913 1.73731 0.89417 1.24021 1.21709 1.84713 1.21523 1.22981 1.68545 1.24067 0.98465 0.82837 1.00873 1.20559 0.89295 0.98570 1.05228 1.20317 0.91663 0.95947 1.09641 1.19432 1.01196 0.88409 0.95881 0.89026 1.21825 1.01805 1.00725 0.95618 1.19665 0.86102 0.83074 0.88004 1.90496 1.44280 1.64607 1.47848 1.41862 1.47498 1.07288 1.22651 1.19763 1.30605 0.92335 1.00288 0.87828 1.25260 0.97060 0.96528 0.98961 1.69612 1.39221 1.09343 1.35897 0.85818 0.78589 0.79109 0.80953 1.19223 1.20698 1.20739 0.90301 0.90169 0.90931 0.90961 0.89828 0.87033 0.91252 0.91954 0.92431 0.77354 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.26 36.01 0.37 -0.59 16 2 C 0.02 0.39 7.33 -82.10 -0.60 -0.22 16 3 N -0.38 -6.93 12.07 33.42 0.40 -6.53 16 4 O 0.08 1.52 11.20 17.17 0.19 1.71 16 5 C 0.00 0.01 6.85 -35.30 -0.24 -0.23 16 6 C -0.08 -1.19 9.36 36.01 0.34 -0.86 16 7 C -0.17 -3.07 4.55 -104.43 -0.48 -3.54 16 8 C -0.03 -0.47 3.00 -92.93 -0.28 -0.75 16 9 H 0.09 1.47 7.33 -51.93 -0.38 1.09 16 10 C -0.14 -2.10 8.97 37.16 0.33 -1.76 16 11 C 0.45 10.06 6.80 -10.99 -0.07 9.98 16 12 O -0.59 -15.10 13.14 5.54 0.07 -15.02 16 13 N -0.56 -13.50 5.18 -10.96 -0.06 -13.56 16 14 C -0.30 -8.07 9.68 -14.94 -0.14 -8.22 16 15 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 16 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 17 N -0.90 -23.74 13.05 55.50 0.72 -23.02 16 18 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 23 H 0.08 0.91 7.54 -51.93 -0.39 0.51 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 1.09 6.32 -51.93 -0.33 0.76 16 27 H 0.11 2.01 6.18 -51.93 -0.32 1.69 16 28 H 0.07 1.02 7.56 -51.93 -0.39 0.62 16 29 H 0.06 0.91 5.70 -51.93 -0.30 0.61 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.39 9.12 7.31 -40.82 -0.30 8.82 16 32 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 273.78 15.07 4.13 4.13 Total: -1.00 -30.56 273.78 -4.04 -34.61 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -3.61 Total: 7.85 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.87 Total: -5.66 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 1.07 Total: -43.11 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.27 Total: -13.31 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.56 -4.04 -34.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604548762.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.587 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds