Wall clock time and date at job start Sun Mar 29 2020 22:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30173 * 126.79905 * 2 1 4 4 O 1.20921 * 111.60761 * 179.97438 * 3 2 1 5 5 C 1.34043 * 111.56080 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.77453 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44954 * 359.74996 * 5 4 3 8 8 C 1.50696 * 128.00853 * 180.23586 * 7 5 4 9 9 H 1.08995 * 109.47151 * 180.16312 * 8 7 5 10 10 C 1.52999 * 109.47128 * 60.16319 * 8 7 5 11 11 C 1.50698 * 109.47139 * 300.16549 * 8 7 5 12 12 O 1.21300 * 120.00102 * 0.02562 * 11 8 7 13 13 N 1.34777 * 120.00402 * 179.97438 * 11 8 7 14 14 C 1.37088 * 120.00438 * 179.97438 * 13 11 8 15 15 H 1.08000 * 120.00311 * 0.02562 * 14 13 11 16 16 C 1.38954 * 120.00191 * 180.02562 * 14 13 11 17 17 N 1.31407 * 119.99871 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00050 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47435 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47196 * 120.00065 * 18 16 14 21 21 H 1.48497 * 109.47213 * 240.00099 * 18 16 14 22 22 H 1.08999 * 109.46995 * 90.02638 * 1 2 3 23 23 H 1.08994 * 109.46790 * 210.02325 * 1 2 3 24 24 H 1.08997 * 109.47305 * 330.02766 * 1 2 3 25 25 H 1.09002 * 109.47213 * 359.97438 * 6 5 4 26 26 H 1.09003 * 109.47326 * 119.97359 * 6 5 4 27 27 H 1.09001 * 109.47446 * 239.97671 * 6 5 4 28 28 H 1.09007 * 109.47436 * 179.97438 * 10 8 7 29 29 H 1.09005 * 109.47571 * 300.00278 * 10 8 7 30 30 H 1.09000 * 109.47180 * 60.00297 * 10 8 7 31 31 H 0.97006 * 119.99154 * 359.97438 * 13 11 8 32 32 H 0.97002 * 120.00302 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7255 0.0005 5 6 3.6025 -0.6067 0.0015 6 6 4.9022 -1.3694 0.0029 7 6 2.3540 -1.1320 0.0072 8 6 1.9592 -2.5863 0.0154 9 1 0.8722 -2.6677 0.0156 10 6 2.5213 -3.2603 1.2687 11 6 2.5135 -3.2642 -1.2110 12 8 3.1655 -2.6290 -2.0127 13 7 2.2857 -4.5766 -1.4166 14 6 2.7895 -5.1932 -2.5325 15 1 3.3693 -4.6275 -3.2468 16 6 2.5542 -6.5461 -2.7448 17 7 1.8482 -7.2344 -1.8760 18 14 3.2413 -7.3864 -4.2650 19 1 3.9940 -6.3986 -5.0791 20 1 4.1510 -8.4860 -3.8542 21 1 2.1246 -7.9427 -5.0705 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8897 0.5142 24 1 -0.3634 0.8902 0.5134 25 1 5.7357 -0.6670 0.0025 26 1 4.9552 -1.9955 0.8935 27 1 4.9560 -1.9974 -0.8865 28 1 2.2353 -4.3121 1.2749 29 1 3.6083 -3.1789 1.2686 30 1 2.1203 -2.7699 2.1558 31 1 1.7652 -5.0848 -0.7749 32 1 1.6836 -8.1788 -2.0243 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604548762.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:01 Heat of formation + Delta-G solvation = -12.904475 kcal Electronic energy + Delta-G solvation = -17186.614668 eV Core-core repulsion = 14342.312214 eV Total energy + Delta-G solvation = -2844.302454 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.83089 -40.37300 -36.71464 -35.83012 -34.72740 -33.47104 -32.16591 -29.53899 -28.65623 -27.12478 -25.42347 -23.04757 -21.41989 -20.41288 -19.79984 -18.61162 -17.95155 -17.48079 -16.61379 -15.97751 -15.86106 -15.18651 -14.73506 -14.48096 -14.22259 -14.01828 -13.94649 -13.60320 -13.46561 -13.20663 -13.18837 -12.90479 -12.82373 -12.39598 -12.14279 -12.04581 -11.81237 -11.45983 -10.80791 -10.27420 -10.01108 -9.90321 -8.44924 -5.92660 0.56219 1.26041 1.37391 1.43969 1.56892 2.06402 2.20788 2.32027 3.19461 3.26868 3.28324 3.63172 3.83876 4.03444 4.27529 4.40045 4.42024 4.53253 4.65134 4.67704 4.72648 4.80012 4.95352 4.97538 5.08040 5.17737 5.24598 5.40826 5.44796 6.02483 6.61619 7.14832 7.32401 7.58547 8.13309 8.72473 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037042 B = 0.006461 C = 0.006204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.714977 B = 4332.349885 C = 4512.195588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.022 3.978 3 N -0.399 5.399 4 O 0.075 5.925 5 C -0.004 4.004 6 C -0.077 4.077 7 C -0.193 4.193 8 C -0.016 4.016 9 H 0.112 0.888 10 C -0.137 4.137 11 C 0.448 3.552 12 O -0.622 6.622 13 N -0.566 5.566 14 C -0.330 4.330 15 H 0.079 0.921 16 C -0.010 4.010 17 N -0.918 5.918 18 Si 0.988 3.012 19 H -0.275 1.275 20 H -0.271 1.271 21 H -0.274 1.274 22 H 0.081 0.919 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.397 0.603 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 6.521 7.859 10.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 N -0.110 5.110 4 O 0.016 5.984 5 C -0.067 4.067 6 C -0.134 4.134 7 C -0.197 4.197 8 C -0.038 4.038 9 H 0.129 0.871 10 C -0.195 4.195 11 C 0.235 3.765 12 O -0.509 6.509 13 N -0.202 5.202 14 C -0.460 4.460 15 H 0.097 0.903 16 C -0.210 4.210 17 N -0.559 5.559 18 Si 0.812 3.188 19 H -0.199 1.199 20 H -0.196 1.196 21 H -0.199 1.199 22 H 0.099 0.901 23 H 0.119 0.881 24 H 0.108 0.892 25 H 0.116 0.884 26 H 0.123 0.877 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.231 0.769 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.461 8.048 7.331 10.896 hybrid contribution -0.065 -1.482 -0.694 1.638 sum -0.526 6.565 6.637 9.351 Atomic orbital electron populations 1.20323 0.83824 1.05134 1.03985 1.23942 1.00317 0.88098 1.01369 1.73720 0.89649 1.24724 1.22932 1.84691 1.21672 1.23164 1.68917 1.24517 0.99382 0.82881 0.99959 1.20577 0.89396 0.98781 1.04597 1.20512 0.92210 0.96241 1.10735 1.19369 1.02135 0.87935 0.94367 0.87051 1.21820 1.01786 1.00702 0.95168 1.20557 0.84653 0.82405 0.88860 1.90480 1.45536 1.65272 1.49562 1.41877 1.48010 1.07999 1.22316 1.19683 1.31894 0.93067 1.01307 0.90278 1.25955 0.97024 0.96551 1.01444 1.69663 1.39504 1.09782 1.36956 0.84937 0.78141 0.77969 0.77711 1.19931 1.19581 1.19900 0.90079 0.88110 0.89203 0.88377 0.87663 0.90180 0.91246 0.92076 0.89485 0.76868 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 10.26 71.24 0.73 -1.06 16 2 C 0.02 0.71 7.33 43.58 0.32 1.03 16 3 N -0.40 -14.17 12.07 -49.55 -0.60 -14.77 16 4 O 0.08 2.65 11.20 71.61 0.80 3.45 16 5 C 0.00 -0.14 6.85 25.04 0.17 0.03 16 6 C -0.08 -2.24 9.36 71.24 0.67 -1.57 16 7 C -0.19 -6.64 4.55 -19.74 -0.09 -6.73 16 8 C -0.02 -0.54 3.00 -12.29 -0.04 -0.58 16 9 H 0.11 3.30 7.33 -2.39 -0.02 3.28 16 10 C -0.14 -3.74 8.97 71.98 0.65 -3.09 16 11 C 0.45 20.20 6.80 87.66 0.60 20.79 16 12 O -0.62 -32.56 13.14 -3.09 -0.04 -32.60 16 13 N -0.57 -27.55 5.18 -306.98 -1.59 -29.14 16 14 C -0.33 -18.01 9.68 84.04 0.81 -17.19 16 15 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 16 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 17 N -0.92 -47.87 13.05 21.66 0.28 -47.59 16 18 Si 0.99 41.82 29.55 68.60 2.03 43.85 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.10 1.95 7.54 -2.39 -0.02 1.93 16 24 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.11 2.57 6.32 -2.39 -0.02 2.56 16 27 H 0.08 2.93 6.18 -2.39 -0.01 2.92 16 28 H 0.07 1.90 7.56 -2.38 -0.02 1.88 16 29 H 0.06 1.66 5.70 -2.38 -0.01 1.65 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.40 18.36 7.31 -92.70 -0.68 17.68 16 32 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 Total: -1.00 -65.58 273.78 5.64 -59.94 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.48 Total: 25.27 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 4.28 Total: -8.41 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -1.91 Total: -91.50 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: 0.76 Total: -29.15 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -65.58 5.64 -59.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604548762.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.035 kcal (2) G-P(sol) polarization free energy of solvation -65.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds