Wall clock time and date at job start Sun Mar 29 2020 22:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47493 * 2 1 4 4 C 1.50706 * 109.46871 * 119.99884 * 2 1 3 5 5 C 1.41381 * 126.79953 * 274.71268 * 4 2 1 6 6 C 1.35454 * 103.98643 * 179.88785 * 5 4 2 7 7 C 1.50700 * 126.77836 * 180.09666 * 6 5 4 8 8 N 1.46496 * 109.47064 * 90.29484 * 7 6 5 9 9 C 1.34773 * 119.99939 * 180.02562 * 8 7 6 10 10 O 1.21692 * 120.00006 * 359.97438 * 9 8 7 11 11 C 1.46372 * 120.00398 * 180.02562 * 9 8 7 12 12 H 1.08009 * 119.99639 * 353.93142 * 11 9 8 13 13 C 1.40044 * 120.00650 * 173.94042 * 11 9 8 14 14 N 1.30677 * 119.99563 * 6.14143 * 13 11 9 15 15 Si 1.86798 * 120.00562 * 186.14647 * 13 11 9 16 16 H 1.48505 * 109.47023 * 94.97715 * 15 13 11 17 17 H 1.48490 * 109.47594 * 214.98146 * 15 13 11 18 18 H 1.48504 * 109.46892 * 334.98243 * 15 13 11 19 19 O 1.34041 * 106.43993 * 0.36464 * 6 5 4 20 20 N 1.20920 * 111.57273 * 359.75280 * 19 6 5 21 21 H 1.08992 * 109.47556 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47202 * 300.01172 * 1 2 3 23 23 H 1.09010 * 109.46605 * 60.00090 * 1 2 3 24 24 H 1.08994 * 109.47279 * 239.99309 * 2 1 3 25 25 H 1.08994 * 109.47422 * 59.99396 * 3 2 1 26 26 H 1.09000 * 109.47372 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46689 * 299.99420 * 3 2 1 28 28 H 1.08001 * 128.00711 * 0.02562 * 5 4 2 29 29 H 1.09000 * 109.46948 * 210.29881 * 7 6 5 30 30 H 1.09001 * 109.46674 * 330.29556 * 7 6 5 31 31 H 0.97003 * 120.00181 * 0.02562 * 8 7 6 32 32 H 0.97006 * 119.99825 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2269 -0.1480 2.5130 6 6 2.6813 -1.1833 3.2590 7 6 3.0524 -1.1488 4.7192 8 7 1.8755 -1.4712 5.5298 9 6 1.9704 -1.4998 6.8739 10 8 3.0338 -1.2583 7.4141 11 6 0.7948 -1.8225 7.6840 12 1 -0.1698 -1.9411 7.2126 13 6 0.9204 -1.9771 9.0702 14 7 2.0590 -1.7165 9.6561 15 14 -0.5395 -2.5560 10.0816 16 1 -0.4611 -4.0274 10.2667 17 1 -0.5188 -1.8885 11.4078 18 1 -1.7992 -2.2126 9.3741 19 8 2.7413 -2.2431 2.4404 20 7 2.3782 -1.9620 1.3218 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5140 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.6768 1.9564 0.8899 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9562 -0.8901 28 1 2.0514 0.8706 2.8261 29 1 3.8377 -1.8798 4.9118 30 1 3.4112 -0.1530 4.9794 31 1 1.0280 -1.6640 5.0993 32 1 2.1461 -1.8239 10.6162 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613083356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:44 Heat of formation + Delta-G solvation = 5.356926 kcal Electronic energy + Delta-G solvation = -16306.671918 eV Core-core repulsion = 13463.161337 eV Total energy + Delta-G solvation = -2843.510580 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.76115 -37.42927 -36.56838 -34.14385 -32.50881 -32.12363 -31.01923 -27.46813 -27.09631 -25.07732 -24.01792 -21.93134 -19.95367 -19.55691 -17.72056 -17.30440 -16.62232 -15.44944 -15.19946 -14.50487 -14.34270 -14.06953 -13.94381 -13.52662 -13.37266 -12.57391 -12.37505 -12.15521 -11.80453 -11.55610 -11.48786 -11.36647 -11.20357 -11.01725 -10.76501 -10.52223 -10.26619 -9.93859 -9.36337 -8.89549 -7.70939 -7.68709 -6.25463 -4.69900 1.58012 2.32888 3.12265 3.19582 3.22704 3.26889 4.06435 4.08540 4.46271 4.52342 4.86204 4.89839 4.98788 5.05218 5.24379 5.40273 5.42039 5.58272 5.61547 5.62965 5.73429 5.81238 6.01149 6.04545 6.10275 6.17475 6.27278 7.39140 7.78206 7.92705 8.25325 8.40529 8.97048 9.39379 10.51146 10.69118 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.039773 B = 0.004726 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.818842 B = 5922.951205 C = 6183.316101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.015 4.015 3 C -0.144 4.144 4 C 0.020 3.980 5 C -0.222 4.222 6 C -0.022 4.022 7 C 0.209 3.791 8 N -0.763 5.763 9 C 0.556 3.444 10 O -0.578 6.578 11 C -0.543 4.543 12 H 0.069 0.931 13 C 0.088 3.912 14 N -0.766 5.766 15 Si 0.909 3.091 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.264 1.264 19 O 0.100 5.900 20 N -0.370 5.370 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.170 0.830 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.384 0.616 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.671 4.398 -15.469 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 C -0.202 4.202 4 C -0.139 4.139 5 C -0.244 4.244 6 C -0.086 4.086 7 C 0.084 3.916 8 N -0.421 5.421 9 C 0.361 3.639 10 O -0.461 6.461 11 C -0.580 4.580 12 H 0.088 0.912 13 C -0.132 4.132 14 N -0.395 5.395 15 Si 0.734 3.266 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.189 1.189 19 O 0.034 5.966 20 N -0.074 5.074 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.187 0.813 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.216 0.784 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.701 3.559 -15.746 16.232 hybrid contribution -1.188 0.340 0.621 1.383 sum -2.888 3.900 -15.124 15.884 Atomic orbital electron populations 1.21820 0.93486 1.02406 1.02406 1.19476 0.96085 0.95342 0.92569 1.21832 1.01419 0.94423 1.02492 1.23528 1.02361 0.90738 0.97290 1.22395 1.07854 1.01783 0.92385 1.24907 1.01171 0.86338 0.96193 1.19343 0.91514 1.02454 0.78330 1.46266 1.10044 1.78638 1.07165 1.18266 0.89998 0.77160 0.78506 1.90615 1.30885 1.53865 1.70741 1.20852 0.94177 1.51285 0.91695 0.91247 1.25703 0.96375 0.93105 0.98017 1.70022 1.24395 1.34632 1.10413 0.86329 0.81875 0.79259 0.79142 1.19727 1.20400 1.18860 1.84835 1.62527 1.35110 1.14099 1.73817 1.16483 1.17049 1.00052 0.92408 0.91982 0.91769 0.89752 0.91881 0.92296 0.91786 0.81254 0.90787 0.89684 0.78441 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.18 37.16 0.34 -0.99 16 2 C -0.02 -0.16 3.39 -91.77 -0.31 -0.47 16 3 C -0.14 -1.21 8.81 37.16 0.33 -0.88 16 4 C 0.02 0.27 6.22 -82.10 -0.51 -0.24 16 5 C -0.22 -3.09 10.27 -39.38 -0.40 -3.49 16 6 C -0.02 -0.35 6.86 -35.30 -0.24 -0.60 16 7 C 0.21 3.86 6.23 -5.20 -0.03 3.83 16 8 N -0.76 -16.65 5.54 -62.91 -0.35 -17.00 16 9 C 0.56 15.43 7.74 -12.99 -0.10 15.33 16 10 O -0.58 -18.21 15.04 5.20 0.08 -18.13 16 11 C -0.54 -15.07 9.53 -35.63 -0.34 -15.41 16 12 H 0.07 1.77 7.86 -52.48 -0.41 1.36 16 13 C 0.09 2.42 5.49 -17.37 -0.10 2.32 16 14 N -0.77 -22.57 11.85 55.55 0.66 -21.91 16 15 Si 0.91 19.83 29.56 -169.99 -5.03 14.81 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 19 O 0.10 1.68 11.20 17.18 0.19 1.87 16 20 N -0.37 -5.96 12.07 33.42 0.40 -5.56 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 24 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.52 7.49 -51.93 -0.39 0.13 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.17 2.01 7.66 -52.49 -0.40 1.61 16 29 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.38 7.59 8.44 -40.82 -0.34 7.24 16 32 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 LS Contribution 285.18 15.07 4.30 4.30 Total: -1.00 -33.00 285.18 -5.18 -38.18 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.06 Total: 4.05 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.37 Total: -0.60 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.71 Total: -44.47 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.27 Total: -16.26 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.81 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.00 -5.18 -38.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613083356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.533 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds