Wall clock time and date at job start Sun Mar 29 2020 22:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47493 * 2 1 4 4 C 1.50706 * 109.46871 * 119.99884 * 2 1 3 5 5 C 1.41381 * 126.79953 * 274.71268 * 4 2 1 6 6 C 1.35454 * 103.98643 * 179.88785 * 5 4 2 7 7 C 1.50700 * 126.77836 * 180.09666 * 6 5 4 8 8 N 1.46496 * 109.47064 * 90.29484 * 7 6 5 9 9 C 1.34773 * 119.99939 * 180.02562 * 8 7 6 10 10 O 1.21692 * 120.00006 * 359.97438 * 9 8 7 11 11 C 1.46372 * 120.00398 * 180.02562 * 9 8 7 12 12 H 1.08009 * 119.99639 * 353.93142 * 11 9 8 13 13 C 1.40044 * 120.00650 * 173.94042 * 11 9 8 14 14 N 1.30677 * 119.99563 * 6.14143 * 13 11 9 15 15 Si 1.86798 * 120.00562 * 186.14647 * 13 11 9 16 16 H 1.48505 * 109.47023 * 94.97715 * 15 13 11 17 17 H 1.48490 * 109.47594 * 214.98146 * 15 13 11 18 18 H 1.48504 * 109.46892 * 334.98243 * 15 13 11 19 19 O 1.34041 * 106.43993 * 0.36464 * 6 5 4 20 20 N 1.20920 * 111.57273 * 359.75280 * 19 6 5 21 21 H 1.08992 * 109.47556 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47202 * 300.01172 * 1 2 3 23 23 H 1.09010 * 109.46605 * 60.00090 * 1 2 3 24 24 H 1.08994 * 109.47279 * 239.99309 * 2 1 3 25 25 H 1.08994 * 109.47422 * 59.99396 * 3 2 1 26 26 H 1.09000 * 109.47372 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46689 * 299.99420 * 3 2 1 28 28 H 1.08001 * 128.00711 * 0.02562 * 5 4 2 29 29 H 1.09000 * 109.46948 * 210.29881 * 7 6 5 30 30 H 1.09001 * 109.46674 * 330.29556 * 7 6 5 31 31 H 0.97003 * 120.00181 * 0.02562 * 8 7 6 32 32 H 0.97006 * 119.99825 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2269 -0.1480 2.5130 6 6 2.6813 -1.1833 3.2590 7 6 3.0524 -1.1488 4.7192 8 7 1.8755 -1.4712 5.5298 9 6 1.9704 -1.4998 6.8739 10 8 3.0338 -1.2583 7.4141 11 6 0.7948 -1.8225 7.6840 12 1 -0.1698 -1.9411 7.2126 13 6 0.9204 -1.9771 9.0702 14 7 2.0590 -1.7165 9.6561 15 14 -0.5395 -2.5560 10.0816 16 1 -0.4611 -4.0274 10.2667 17 1 -0.5188 -1.8885 11.4078 18 1 -1.7992 -2.2126 9.3741 19 8 2.7413 -2.2431 2.4404 20 7 2.3782 -1.9620 1.3218 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5140 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.6768 1.9564 0.8899 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9562 -0.8901 28 1 2.0514 0.8706 2.8261 29 1 3.8377 -1.8798 4.9118 30 1 3.4112 -0.1530 4.9794 31 1 1.0280 -1.6640 5.0993 32 1 2.1461 -1.8239 10.6162 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613083356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:44 Heat of formation + Delta-G solvation = -17.756198 kcal Electronic energy + Delta-G solvation = -16307.674178 eV Core-core repulsion = 13463.161337 eV Total energy + Delta-G solvation = -2844.512841 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.96628 -39.45662 -37.47943 -35.88990 -34.56328 -33.27187 -32.53196 -29.06962 -28.07122 -26.83076 -25.05356 -23.05406 -21.88284 -20.75008 -19.44027 -18.58649 -18.05638 -17.41539 -16.50893 -16.00315 -15.74526 -15.59142 -15.20815 -14.74294 -14.36232 -14.21511 -13.85156 -13.34965 -13.11512 -13.00314 -12.78862 -12.61024 -12.51446 -12.38245 -12.23568 -11.99837 -11.74652 -11.03292 -10.93132 -10.67628 -9.86899 -9.61549 -8.31276 -6.86543 0.31071 1.20863 1.42454 1.43143 1.59148 1.97058 2.26508 2.45555 3.07738 3.14791 3.38350 3.59122 3.96143 4.06038 4.15194 4.18059 4.32564 4.50857 4.65719 4.70229 4.79587 4.91479 4.96841 5.01953 5.17692 5.32168 5.32650 5.37453 5.83302 6.04742 6.21785 6.86234 7.19027 7.43250 8.43127 8.64326 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.039773 B = 0.004726 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.818842 B = 5922.951205 C = 6183.316101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.018 4.018 3 C -0.141 4.141 4 C 0.028 3.972 5 C -0.204 4.204 6 C -0.035 4.035 7 C 0.216 3.784 8 N -0.752 5.752 9 C 0.542 3.458 10 O -0.626 6.626 11 C -0.572 4.572 12 H 0.087 0.913 13 C 0.032 3.968 14 N -0.818 5.818 15 Si 0.997 3.003 16 H -0.265 1.265 17 H -0.271 1.271 18 H -0.249 1.249 19 O 0.078 5.922 20 N -0.390 5.390 21 H 0.043 0.957 22 H 0.060 0.940 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.193 0.807 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.395 0.605 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.624 5.128 -16.558 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.037 4.037 3 C -0.199 4.199 4 C -0.131 4.131 5 C -0.226 4.226 6 C -0.099 4.099 7 C 0.091 3.909 8 N -0.408 5.408 9 C 0.347 3.653 10 O -0.513 6.513 11 C -0.608 4.608 12 H 0.105 0.895 13 C -0.184 4.184 14 N -0.448 5.448 15 Si 0.817 3.183 16 H -0.190 1.190 17 H -0.196 1.196 18 H -0.172 1.172 19 O 0.016 5.984 20 N -0.097 5.097 21 H 0.063 0.937 22 H 0.079 0.921 23 H 0.108 0.892 24 H 0.106 0.894 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.211 0.789 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.229 0.771 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.664 4.284 -16.879 17.796 hybrid contribution -0.555 0.153 0.820 1.002 sum -4.219 4.437 -16.059 17.187 Atomic orbital electron populations 1.21817 0.92459 1.01927 1.03640 1.19708 0.96839 0.96229 0.90929 1.21839 1.01186 0.93026 1.03821 1.24156 1.00556 0.89975 0.98391 1.22714 1.05727 1.02181 0.91996 1.24478 1.03047 0.87211 0.95127 1.19220 0.89898 1.02177 0.79650 1.45877 1.11576 1.77343 1.05982 1.18567 0.89590 0.76851 0.80291 1.90571 1.32397 1.56001 1.72346 1.21395 0.94987 1.51658 0.92782 0.89461 1.26930 0.99819 0.92412 0.99236 1.70171 1.27429 1.35929 1.11237 0.85009 0.77527 0.78724 0.77065 1.18952 1.19600 1.17221 1.84816 1.63513 1.35615 1.14505 1.73829 1.17608 1.18465 0.99784 0.93741 0.92099 0.89229 0.89393 0.91560 0.92697 0.89531 0.78935 0.92003 0.89286 0.77135 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.18 71.98 0.66 -1.57 16 2 C -0.02 -0.32 3.39 -11.54 -0.04 -0.36 16 3 C -0.14 -1.92 8.81 71.98 0.63 -1.29 16 4 C 0.03 0.74 6.22 43.58 0.27 1.01 16 5 C -0.20 -5.34 10.27 22.40 0.23 -5.11 16 6 C -0.04 -1.11 6.86 25.04 0.17 -0.94 16 7 C 0.22 8.08 6.23 85.63 0.53 8.61 16 8 N -0.75 -33.10 5.54 -471.16 -2.61 -35.71 16 9 C 0.54 30.72 7.74 86.36 0.67 31.38 16 10 O -0.63 -40.78 15.04 -4.32 -0.07 -40.84 16 11 C -0.57 -31.83 9.53 24.83 0.24 -31.59 16 12 H 0.09 4.37 7.86 -2.91 -0.02 4.35 16 13 C 0.03 1.73 5.49 85.30 0.47 2.20 16 14 N -0.82 -49.15 11.85 21.83 0.26 -48.89 16 15 Si 1.00 40.23 29.56 68.60 2.03 42.25 16 16 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 17 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 18 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 19 O 0.08 2.63 11.20 71.63 0.80 3.43 16 20 N -0.39 -12.30 12.07 -49.57 -0.60 -12.90 16 21 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 23 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 0.87 7.49 -2.39 -0.02 0.85 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.19 4.05 7.66 -2.91 -0.02 4.03 16 29 H 0.06 2.46 8.14 -2.39 -0.02 2.45 16 30 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.40 15.52 8.44 -92.71 -0.78 14.74 16 32 H 0.28 14.97 8.29 -92.70 -0.77 14.20 16 Total: -1.00 -72.60 285.18 4.00 -68.60 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.35 Total: 21.71 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 3.84 Total: 2.35 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -2.95 Total: -97.50 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: 0.74 Total: -37.41 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.25 kcal Total: -72.60 4.00 -68.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613083356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.846 kcal (2) G-P(sol) polarization free energy of solvation -72.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds