Wall clock time and date at job start Sun Mar 29 2020 22:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.34946 * 126.03695 * 84.71491 * 4 2 1 6 6 C 1.35317 * 107.74396 * 179.84143 * 5 4 2 7 7 C 1.39864 * 107.92273 * 0.41968 * 6 5 4 8 8 C 1.50703 * 125.90253 * 179.72381 * 7 6 5 9 9 C 1.50693 * 109.47307 * 125.00096 * 8 7 6 10 10 O 1.21214 * 120.00251 * 359.97438 * 9 8 7 11 11 O 1.34308 * 119.99763 * 180.02562 * 9 8 7 12 12 C 1.34923 * 117.00184 * 179.97438 * 11 9 8 13 13 H 1.07997 * 119.99644 * 0.02562 * 12 11 9 14 14 C 1.38752 * 120.00372 * 179.97438 * 12 11 9 15 15 N 1.31447 * 119.99840 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00196 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47154 * 59.99711 * 16 14 12 18 18 H 1.48495 * 109.47407 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46894 * 300.00082 * 16 14 12 20 20 N 1.30839 * 108.19848 * 359.73815 * 7 6 5 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 26 26 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 27 27 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 28 28 H 1.07997 * 126.12996 * 359.97438 * 5 4 2 29 29 H 1.08002 * 126.03809 * 180.16600 * 6 5 4 30 30 H 1.09002 * 109.46447 * 244.99777 * 8 7 6 31 31 H 1.09004 * 109.46816 * 4.99511 * 8 7 6 32 32 H 0.96998 * 119.99928 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4167 6 6 2.6566 -1.1050 -3.2422 7 6 2.7681 -2.2872 -2.5031 8 6 3.2457 -3.6164 -3.0289 9 6 4.3913 -4.1090 -2.1828 10 8 4.7816 -3.4462 -1.2460 11 8 4.9804 -5.2819 -2.4675 12 6 6.0003 -5.6643 -1.6712 13 1 6.3079 -5.0358 -0.8486 14 6 6.6531 -6.8654 -1.9086 15 7 6.2777 -7.6310 -2.9089 16 14 8.0647 -7.3951 -0.8057 17 1 7.5803 -7.5202 0.5926 18 1 8.5882 -8.7060 -1.2668 19 1 9.1473 -6.3804 -0.8655 20 7 2.3857 -2.0399 -1.2766 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 3.1299 1.4426 -0.0005 28 1 1.9883 0.8861 -2.6859 29 1 2.8977 -0.9843 -4.2880 30 1 2.4289 -4.3371 -2.9898 31 1 3.5791 -3.5005 -4.0602 32 1 6.7338 -8.4709 -3.0746 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745323344.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:27 Heat of formation + Delta-G solvation = -7.290268 kcal Electronic energy + Delta-G solvation = -16415.343302 eV Core-core repulsion = 13571.284298 eV Total energy + Delta-G solvation = -2844.059004 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.99488 -38.73025 -35.96702 -34.92003 -32.04602 -31.53011 -29.69119 -27.98300 -27.49990 -25.08709 -22.73632 -20.81865 -19.91390 -18.93426 -17.57488 -16.96834 -16.34617 -15.15365 -14.77482 -14.65531 -14.32409 -14.20789 -13.68089 -13.46996 -12.88860 -12.68056 -12.50241 -12.24604 -11.98179 -11.85753 -11.52373 -11.44470 -11.25195 -11.01202 -10.39545 -10.25786 -10.12164 -9.69308 -8.96309 -8.79790 -8.46097 -8.27296 -6.29653 -3.96835 2.19847 2.67283 3.07992 3.21807 3.25681 3.30498 3.70556 4.08192 4.39512 4.70421 4.74317 4.87946 4.94784 5.03677 5.21681 5.22923 5.34188 5.42085 5.59871 5.65506 5.81970 5.91100 5.93707 6.07221 6.12982 6.32828 6.79518 7.07107 7.30237 7.51051 8.08220 8.12039 8.87463 9.19552 10.00393 10.88880 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.044843 B = 0.004917 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.256765 B = 5693.605632 C = 6011.838930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.155 3.845 3 C -0.163 4.163 4 N -0.372 5.372 5 C 0.044 3.956 6 C -0.265 4.265 7 C 0.090 3.910 8 C -0.025 4.025 9 C 0.403 3.597 10 O -0.541 6.541 11 O -0.219 6.219 12 C -0.378 4.378 13 H 0.093 0.907 14 C 0.041 3.959 15 N -0.869 5.869 16 Si 0.942 3.058 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.271 1.271 20 N -0.259 5.259 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.102 0.898 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.166 0.834 29 H 0.146 0.854 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.440 15.360 1.181 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 C -0.221 4.221 4 N -0.155 5.155 5 C -0.101 4.101 6 C -0.294 4.294 7 C -0.077 4.077 8 C -0.065 4.065 9 C 0.247 3.753 10 O -0.436 6.436 11 O -0.127 6.127 12 C -0.455 4.455 13 H 0.110 0.890 14 C -0.162 4.162 15 N -0.507 5.507 16 Si 0.767 3.233 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.196 1.196 20 N -0.080 5.080 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.079 0.921 24 H 0.120 0.880 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.184 0.816 29 H 0.163 0.837 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.503 14.916 2.630 18.431 hybrid contribution 0.823 0.160 -0.331 0.901 sum -9.680 15.076 2.299 18.063 Atomic orbital electron populations 1.22229 0.93941 1.03286 1.02641 1.21177 0.94462 0.92606 0.86496 1.22176 1.02556 0.94159 1.03204 1.48844 1.50877 1.07748 1.08034 1.22284 1.02452 0.99536 0.85849 1.21324 1.14250 0.92431 1.01428 1.21689 0.99055 0.95693 0.91301 1.19438 0.96384 0.91340 0.99346 1.22891 0.85088 0.81980 0.85291 1.90587 1.64601 1.57651 1.30779 1.83871 1.43238 1.33046 1.52518 1.21133 1.08532 1.04909 1.10906 0.88950 1.25287 0.98683 0.95031 0.97243 1.69987 1.40538 1.12043 1.28138 0.85769 0.80083 0.77892 0.79544 1.19609 1.20442 1.19607 1.77504 1.19191 0.92140 1.19139 0.91569 0.90759 0.92075 0.88032 0.91712 0.90234 0.91376 0.81642 0.83667 0.87512 0.87147 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.52 37.16 0.35 -1.11 16 2 C 0.15 1.75 3.93 -67.93 -0.27 1.48 16 3 C -0.16 -1.34 8.84 37.16 0.33 -1.01 16 4 N -0.37 -5.74 3.52 -54.87 -0.19 -5.93 16 5 C 0.04 0.60 10.59 -17.22 -0.18 0.41 16 6 C -0.26 -4.10 10.72 -40.01 -0.43 -4.53 16 7 C 0.09 1.72 6.01 -82.41 -0.50 1.23 16 8 C -0.03 -0.50 6.39 -29.04 -0.19 -0.68 16 9 C 0.40 10.57 7.90 36.00 0.28 10.85 16 10 O -0.54 -15.66 14.80 -19.06 -0.28 -15.94 16 11 O -0.22 -6.53 9.75 -20.70 -0.20 -6.73 16 12 C -0.38 -11.67 9.65 30.92 0.30 -11.38 16 13 H 0.09 2.89 6.86 -52.49 -0.36 2.53 16 14 C 0.04 1.19 5.49 -17.53 -0.10 1.09 16 15 N -0.87 -26.22 13.67 55.48 0.76 -25.46 16 16 Si 0.94 22.12 29.55 -169.99 -5.02 17.10 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 N -0.26 -5.22 11.92 33.67 0.40 -4.82 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.06 0.45 7.16 -51.93 -0.37 0.08 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.17 1.52 7.27 -52.49 -0.38 1.14 16 29 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.11 1.90 8.14 -51.93 -0.42 1.47 16 31 H 0.11 1.83 8.12 -51.93 -0.42 1.41 16 32 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 286.34 15.07 4.32 4.32 Total: -1.00 -37.29 286.34 -4.67 -41.96 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.05 Total: -0.84 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -0.39 Total: -3.64 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.97 Total: -36.22 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.48 Total: -22.68 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -37.29 -4.67 -41.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745323344.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.667 kcal (2) G-P(sol) polarization free energy of solvation -37.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds