Wall clock time and date at job start Sun Mar 29 2020 22:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.34946 * 126.03695 * 84.71491 * 4 2 1 6 6 C 1.35317 * 107.74396 * 179.84143 * 5 4 2 7 7 C 1.39864 * 107.92273 * 0.41968 * 6 5 4 8 8 C 1.50703 * 125.90253 * 179.72381 * 7 6 5 9 9 C 1.50693 * 109.47307 * 125.00096 * 8 7 6 10 10 O 1.21214 * 120.00251 * 359.97438 * 9 8 7 11 11 O 1.34308 * 119.99763 * 180.02562 * 9 8 7 12 12 C 1.34923 * 117.00184 * 179.97438 * 11 9 8 13 13 H 1.07997 * 119.99644 * 0.02562 * 12 11 9 14 14 C 1.38752 * 120.00372 * 179.97438 * 12 11 9 15 15 N 1.31447 * 119.99840 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00196 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47154 * 59.99711 * 16 14 12 18 18 H 1.48495 * 109.47407 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46894 * 300.00082 * 16 14 12 20 20 N 1.30839 * 108.19848 * 359.73815 * 7 6 5 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 26 26 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 27 27 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 28 28 H 1.07997 * 126.12996 * 359.97438 * 5 4 2 29 29 H 1.08002 * 126.03809 * 180.16600 * 6 5 4 30 30 H 1.09002 * 109.46447 * 244.99777 * 8 7 6 31 31 H 1.09004 * 109.46816 * 4.99511 * 8 7 6 32 32 H 0.96998 * 119.99928 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4167 6 6 2.6566 -1.1050 -3.2422 7 6 2.7681 -2.2872 -2.5031 8 6 3.2457 -3.6164 -3.0289 9 6 4.3913 -4.1090 -2.1828 10 8 4.7816 -3.4462 -1.2460 11 8 4.9804 -5.2819 -2.4675 12 6 6.0003 -5.6643 -1.6712 13 1 6.3079 -5.0358 -0.8486 14 6 6.6531 -6.8654 -1.9086 15 7 6.2777 -7.6310 -2.9089 16 14 8.0647 -7.3951 -0.8057 17 1 7.5803 -7.5202 0.5926 18 1 8.5882 -8.7060 -1.2668 19 1 9.1473 -6.3804 -0.8655 20 7 2.3857 -2.0399 -1.2766 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 3.1299 1.4426 -0.0005 28 1 1.9883 0.8861 -2.6859 29 1 2.8977 -0.9843 -4.2880 30 1 2.4289 -4.3371 -2.9898 31 1 3.5791 -3.5005 -4.0602 32 1 6.7338 -8.4709 -3.0746 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745323344.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:26 Heat of formation + Delta-G solvation = -32.905654 kcal Electronic energy + Delta-G solvation = -16416.454068 eV Core-core repulsion = 13571.284298 eV Total energy + Delta-G solvation = -2845.169770 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.21761 -40.84771 -37.41157 -36.62680 -34.29278 -32.95325 -30.89131 -29.38110 -28.20048 -27.25480 -23.87876 -22.55318 -20.98880 -20.44072 -19.83961 -18.42495 -17.97271 -16.80103 -16.55027 -16.27134 -16.06406 -15.37784 -15.00055 -14.56615 -14.26247 -13.90058 -13.74738 -13.56053 -13.38112 -13.11128 -13.03852 -12.83585 -12.35213 -12.29840 -12.16179 -12.05691 -12.00412 -11.45060 -11.00161 -10.68350 -10.18693 -9.44706 -8.52355 -6.32187 1.01652 1.32893 1.33474 1.48822 1.62733 1.68695 1.77950 2.17951 2.92488 2.98569 3.47546 3.76651 3.94865 3.97479 4.09675 4.28229 4.50844 4.59409 4.64925 4.72927 4.78349 4.86169 4.87623 4.93419 5.11786 5.16001 5.20723 5.24847 5.70682 5.85429 6.28859 6.70795 6.86018 6.92545 7.80017 8.68451 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.044843 B = 0.004917 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.256765 B = 5693.605632 C = 6011.838930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 C -0.154 4.154 4 N -0.371 5.371 5 C 0.061 3.939 6 C -0.279 4.279 7 C 0.061 3.939 8 C -0.015 4.015 9 C 0.399 3.601 10 O -0.573 6.573 11 O -0.246 6.246 12 C -0.422 4.422 13 H 0.075 0.925 14 C -0.003 4.003 15 N -0.903 5.903 16 Si 1.017 2.983 17 H -0.265 1.265 18 H -0.256 1.256 19 H -0.262 1.262 20 N -0.322 5.322 21 H 0.040 0.960 22 H 0.102 0.898 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.049 0.951 28 H 0.217 0.783 29 H 0.172 0.828 30 H 0.121 0.879 31 H 0.143 0.857 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.780 17.128 0.964 20.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 C -0.212 4.212 4 N -0.154 5.154 5 C -0.085 4.085 6 C -0.308 4.308 7 C -0.105 4.105 8 C -0.054 4.054 9 C 0.246 3.754 10 O -0.470 6.470 11 O -0.154 6.154 12 C -0.498 4.498 13 H 0.093 0.907 14 C -0.203 4.203 15 N -0.540 5.540 16 Si 0.835 3.165 17 H -0.190 1.190 18 H -0.180 1.180 19 H -0.187 1.187 20 N -0.144 5.144 21 H 0.059 0.941 22 H 0.121 0.879 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.125 0.875 27 H 0.069 0.931 28 H 0.233 0.767 29 H 0.189 0.811 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.868 16.688 2.402 20.059 hybrid contribution 0.827 -0.276 -0.235 0.903 sum -10.040 16.413 2.167 19.362 Atomic orbital electron populations 1.22171 0.91887 1.02316 1.04746 1.21601 0.96105 0.93841 0.84502 1.22166 1.01377 0.91968 1.05672 1.49213 1.49924 1.06441 1.09850 1.23046 0.99863 1.01155 0.84424 1.21691 1.14882 0.91315 1.02940 1.21794 1.00224 0.96390 0.92042 1.19546 0.94001 0.92357 0.99526 1.24209 0.85466 0.80491 0.85225 1.90545 1.65805 1.58209 1.32438 1.83893 1.43683 1.34843 1.53013 1.21316 1.10384 1.06245 1.11826 0.90691 1.26501 1.01110 0.94048 0.98665 1.70065 1.41888 1.12628 1.29446 0.84712 0.76057 0.78382 0.77313 1.18959 1.17960 1.18667 1.77371 1.21294 0.95439 1.20339 0.94058 0.87898 0.90647 0.90251 0.89473 0.87546 0.93141 0.76651 0.81050 0.86063 0.83968 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.52 71.98 0.69 -1.76 16 2 C 0.14 3.00 3.93 44.99 0.18 3.18 16 3 C -0.15 -2.08 8.84 71.98 0.64 -1.44 16 4 N -0.37 -11.13 3.52 -327.49 -1.15 -12.28 16 5 C 0.06 1.49 10.59 83.54 0.89 2.37 16 6 C -0.28 -8.15 10.72 21.99 0.24 -7.91 16 7 C 0.06 2.35 6.01 43.10 0.26 2.61 16 8 C -0.02 -0.61 6.39 29.10 0.19 -0.42 16 9 C 0.40 21.80 7.90 71.23 0.56 22.36 16 10 O -0.57 -34.77 14.80 20.76 0.31 -34.46 16 11 O -0.25 -15.26 9.75 14.87 0.14 -15.12 16 12 C -0.42 -27.03 9.65 67.94 0.66 -26.37 16 13 H 0.08 4.92 6.86 -2.91 -0.02 4.90 16 14 C 0.00 -0.19 5.49 84.87 0.47 0.27 16 15 N -0.90 -54.98 13.67 21.62 0.30 -54.68 16 16 Si 1.02 45.34 29.55 68.60 2.03 47.37 16 17 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 18 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 20 N -0.32 -13.29 11.92 -47.38 -0.56 -13.86 16 21 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.09 0.80 7.16 -2.39 -0.02 0.78 16 26 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.22 2.85 7.27 -2.91 -0.02 2.83 16 29 H 0.17 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.12 4.39 8.14 -2.39 -0.02 4.37 16 31 H 0.14 4.64 8.12 -2.38 -0.02 4.62 16 32 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -85.53 286.34 6.92 -78.61 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 1.11 Total: 11.53 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 4.75 Total: -7.11 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -1.42 Total: -80.82 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: 0.45 Total: -49.58 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -85.53 6.92 -78.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745323344.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.707 kcal (2) G-P(sol) polarization free energy of solvation -85.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds