Wall clock time and date at job start Sun Mar 29 2020 22:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47418 * 2 1 4 4 C 1.50702 * 109.47048 * 120.00432 * 2 1 3 5 5 C 1.39632 * 126.04996 * 274.71117 * 4 2 1 6 6 C 1.38551 * 105.34549 * 180.26514 * 5 4 2 7 7 C 1.46942 * 126.89505 * 180.02562 * 6 5 4 8 8 O 1.21589 * 120.00113 * 359.94687 * 7 6 5 9 9 O 1.34824 * 119.99772 * 179.97438 * 7 6 5 10 10 C 1.34836 * 116.99986 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00156 * 359.97438 * 10 9 7 12 12 C 1.38823 * 119.99860 * 180.02562 * 10 9 7 13 13 N 1.31410 * 120.00189 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99797 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47013 * 59.99894 * 14 12 10 16 16 H 1.48497 * 109.46994 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47154 * 300.00120 * 14 12 10 18 18 N 1.36671 * 106.20307 * 359.97438 * 6 5 4 19 19 C 1.46498 * 125.19818 * 180.02562 * 18 6 5 20 20 N 1.28440 * 109.60399 * 0.02562 * 18 6 5 21 21 H 1.08993 * 109.47310 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.46808 * 300.00331 * 1 2 3 23 23 H 1.08999 * 109.46967 * 59.99824 * 1 2 3 24 24 H 1.09009 * 109.47042 * 239.99591 * 2 1 3 25 25 H 1.09006 * 109.47488 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47195 * 300.00036 * 3 2 1 27 27 H 1.09000 * 109.47354 * 60.00386 * 3 2 1 28 28 H 1.07996 * 127.32687 * 0.26273 * 5 4 2 29 29 H 0.96993 * 120.00421 * 180.02562 * 13 12 10 30 30 H 1.09001 * 109.47027 * 270.01997 * 19 18 6 31 31 H 1.09000 * 109.47339 * 30.02146 * 19 18 6 32 32 H 1.09000 * 109.47250 * 150.02384 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.2188 -0.1390 2.4907 6 6 2.6945 -1.1647 3.2916 7 6 3.0490 -1.0804 4.7152 8 8 2.9351 -0.0252 5.3086 9 8 3.5010 -2.1729 5.3631 10 6 3.8078 -2.0274 6.6680 11 1 3.6875 -1.0671 7.1473 12 6 4.2792 -3.1119 7.3953 13 7 4.4259 -4.2803 6.8121 14 14 4.7049 -2.9102 9.2029 15 1 3.4977 -2.4746 9.9501 16 1 5.1818 -4.2071 9.7467 17 1 5.7728 -1.8888 9.3489 18 7 2.7669 -2.2707 2.4920 19 6 3.2207 -3.5955 2.9223 20 7 2.3761 -1.9711 1.3058 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 2.0320 0.8846 2.7797 29 1 4.7549 -5.0382 7.3202 30 1 4.2975 -3.6765 2.7742 31 1 2.9876 -3.7343 3.9780 32 1 2.7146 -4.3615 2.3347 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747003769.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:06 Heat of formation + Delta-G solvation = -35.051621 kcal Electronic energy + Delta-G solvation = -16811.302354 eV Core-core repulsion = 13966.039528 eV Total energy + Delta-G solvation = -2845.262826 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.58821 -40.89669 -37.41820 -36.87835 -34.39696 -33.29790 -32.06884 -28.12120 -27.76432 -27.60797 -24.85460 -23.44102 -21.52486 -20.75916 -19.94143 -18.67661 -17.47233 -17.41671 -16.59445 -16.27685 -16.26948 -15.36639 -15.06686 -14.83964 -14.47327 -14.16117 -13.71550 -13.52145 -13.35794 -13.19195 -12.85349 -12.47826 -12.37316 -12.28955 -12.16104 -11.99697 -11.99074 -11.50816 -11.31971 -10.75658 -10.22696 -9.88946 -8.62187 -6.38402 0.08676 1.33796 1.39503 1.46430 1.50255 1.52404 2.01784 2.02888 2.53142 2.94589 3.35854 3.86432 4.03676 4.16937 4.29760 4.34085 4.45393 4.55079 4.58437 4.74785 4.91074 4.91343 5.06589 5.08440 5.11756 5.21408 5.44101 5.47559 5.53025 5.72693 5.73825 6.43457 6.82459 7.00637 7.56910 8.57026 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.048415 B = 0.005807 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.199840 B = 4820.870766 C = 5233.318936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.005 4.005 3 C -0.141 4.141 4 C 0.030 3.970 5 C -0.163 4.163 6 C -0.026 4.026 7 C 0.462 3.538 8 O -0.565 6.565 9 O -0.221 6.221 10 C -0.424 4.424 11 H 0.084 0.916 12 C 0.007 3.993 13 N -0.887 5.887 14 Si 1.017 2.983 15 H -0.263 1.263 16 H -0.258 1.258 17 H -0.263 1.263 18 N -0.269 5.269 19 C 0.089 3.911 20 N -0.286 5.286 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.170 0.830 29 H 0.283 0.717 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 3.710 -11.111 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 C -0.199 4.199 4 C -0.127 4.127 5 C -0.192 4.192 6 C -0.151 4.151 7 C 0.310 3.690 8 O -0.462 6.462 9 O -0.128 6.128 10 C -0.499 4.499 11 H 0.102 0.898 12 C -0.195 4.195 13 N -0.523 5.523 14 Si 0.836 3.164 15 H -0.187 1.187 16 H -0.182 1.182 17 H -0.188 1.188 18 N -0.058 5.058 19 C -0.050 4.050 20 N -0.120 5.120 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.107 0.893 24 H 0.110 0.890 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.187 0.813 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.008 2.581 -11.437 12.391 hybrid contribution 0.322 0.555 1.610 1.733 sum -3.686 3.136 -9.827 10.954 Atomic orbital electron populations 1.21801 0.92878 1.01846 1.03056 1.19591 0.96445 0.95452 0.91055 1.21834 1.00958 0.93798 1.03332 1.22528 1.03682 0.89638 0.96810 1.22106 1.05082 0.99602 0.92408 1.20928 1.12949 0.90797 0.90475 1.20065 0.79243 0.83273 0.86404 1.90639 1.56120 1.31206 1.68272 1.83931 1.68529 1.34856 1.25533 1.21481 1.46963 0.99058 0.82396 0.89844 1.26461 0.94649 0.93303 1.05135 1.69977 1.41782 1.01199 1.39364 0.84689 0.79294 0.78796 0.73658 1.18736 1.18155 1.18754 1.45938 1.44618 1.10060 1.05224 1.22398 1.01787 0.78179 1.02655 1.73008 1.17481 1.18618 1.02927 0.93535 0.92881 0.89311 0.88960 0.93164 0.89328 0.92367 0.81292 0.90772 0.89383 0.89039 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.18 71.98 0.66 -2.01 16 2 C -0.01 -0.12 3.38 -11.54 -0.04 -0.16 16 3 C -0.14 -2.66 8.78 71.98 0.63 -2.03 16 4 C 0.03 0.96 6.13 43.04 0.26 1.23 16 5 C -0.16 -6.15 9.99 22.68 0.23 -5.92 16 6 C -0.03 -1.16 6.96 40.75 0.28 -0.87 16 7 C 0.46 24.80 7.87 70.10 0.55 25.35 16 8 O -0.57 -32.50 16.17 19.55 0.32 -32.19 16 9 O -0.22 -12.71 7.20 10.60 0.08 -12.63 16 10 C -0.42 -24.97 9.65 67.96 0.66 -24.32 16 11 H 0.08 5.03 6.86 -2.91 -0.02 5.01 16 12 C 0.01 0.37 5.50 84.90 0.47 0.84 16 13 N -0.89 -48.75 13.67 21.64 0.30 -48.45 16 14 Si 1.02 41.63 29.55 68.60 2.03 43.66 16 15 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 16 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 17 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 18 N -0.27 -10.79 3.75 -356.07 -1.34 -12.13 16 19 C 0.09 3.22 10.81 127.77 1.38 4.61 16 20 N -0.29 -10.39 11.90 -47.51 -0.57 -10.95 16 21 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.13 7.36 -2.39 -0.02 1.12 16 28 H 0.17 5.81 7.51 -2.91 -0.02 5.79 16 29 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 30 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.09 3.95 6.15 -2.39 -0.01 3.94 16 32 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -68.59 283.13 7.02 -61.57 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.12 Total: 14.42 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 5.08 Total: -3.29 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -1.61 Total: -71.54 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: 0.39 Total: -44.82 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -68.59 7.02 -61.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747003769.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.520 kcal (2) G-P(sol) polarization free energy of solvation -68.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds