Wall clock time and date at job start Sun Mar 29 2020 22:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.35339 * 126.37318 * 324.68721 * 4 2 1 6 6 C 1.41574 * 105.50121 * 179.90252 * 5 4 2 7 7 C 1.47523 * 126.52693 * 180.16081 * 6 5 4 8 8 O 1.21526 * 120.00344 * 0.26753 * 7 6 5 9 9 O 1.34753 * 120.00352 * 180.26990 * 7 6 5 10 10 C 1.34866 * 117.00655 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99498 * 0.02562 * 10 9 7 12 12 C 1.38789 * 120.00241 * 179.97438 * 10 9 7 13 13 N 1.31427 * 120.00003 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00004 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47310 * 90.00343 * 14 12 10 16 16 H 1.48504 * 109.46952 * 210.00060 * 14 12 10 17 17 H 1.48495 * 109.47248 * 329.99943 * 14 12 10 18 18 N 1.31882 * 106.94341 * 0.36300 * 6 5 4 19 19 N 1.28468 * 110.05839 * 359.77513 * 18 6 5 20 20 C 1.46505 * 124.87670 * 180.02562 * 19 18 6 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.08005 * 127.24485 * 359.97438 * 5 4 2 29 29 H 0.97000 * 120.00123 * 179.97438 * 13 12 10 30 30 H 1.09000 * 109.46455 * 269.97134 * 20 19 18 31 31 H 1.09004 * 109.47107 * 29.97090 * 20 19 18 32 32 H 1.08996 * 109.47133 * 149.97415 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.4616 -0.6916 2.4575 6 6 2.2893 -1.5010 3.2723 7 6 2.0898 -1.8006 4.7030 8 8 1.1338 -1.3375 5.2933 9 8 2.9676 -2.5877 5.3554 10 6 2.7272 -2.8215 6.6617 11 1 1.8619 -2.3848 7.1380 12 6 3.5912 -3.6240 7.3936 13 7 4.6440 -4.1558 6.8138 14 14 3.2578 -3.9483 9.2028 15 1 2.4121 -5.1611 9.3406 16 1 4.5447 -4.1588 9.9133 17 1 2.5516 -2.7828 9.7926 18 7 3.2751 -1.9326 2.5100 19 7 3.1391 -1.4797 1.3155 20 6 4.0530 -1.7583 0.2048 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 0.5630 -0.1700 2.7524 29 1 5.2480 -4.7164 7.3254 30 1 4.8356 -1.0000 0.1794 31 1 4.5038 -2.7411 0.3429 32 1 3.4997 -1.7410 -0.7341 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747015244.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:08 Heat of formation + Delta-G solvation = -34.485773 kcal Electronic energy + Delta-G solvation = -16629.777181 eV Core-core repulsion = 13784.538891 eV Total energy + Delta-G solvation = -2845.238289 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.73246 -40.83636 -37.30161 -36.68866 -34.50884 -34.27977 -30.68163 -28.94297 -27.98769 -27.33871 -24.64778 -23.52955 -21.60591 -20.64682 -19.86926 -18.30431 -17.89611 -17.38473 -16.62784 -16.35311 -16.20253 -15.45100 -14.97009 -14.68683 -14.49778 -13.96208 -13.67651 -13.65604 -13.40669 -13.15715 -12.95029 -12.59002 -12.42547 -12.18853 -12.08246 -12.05942 -11.74097 -11.66667 -11.34794 -10.74013 -10.13582 -9.95888 -8.57750 -6.37587 0.44179 1.07870 1.31995 1.42850 1.50643 1.59129 2.12077 2.23993 2.70816 2.98367 3.49385 3.51260 3.96427 4.20254 4.29186 4.35116 4.46895 4.52059 4.64435 4.70840 4.79568 4.87177 5.02047 5.04770 5.09215 5.16980 5.34664 5.41924 5.46711 5.76370 5.91442 6.48674 6.84023 6.93417 7.71465 8.63416 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.045342 B = 0.005516 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.375641 B = 5074.571747 C = 5524.643776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.016 4.016 3 C -0.142 4.142 4 C 0.035 3.965 5 C -0.195 4.195 6 C -0.016 4.016 7 C 0.474 3.526 8 O -0.573 6.573 9 O -0.228 6.228 10 C -0.427 4.427 11 H 0.087 0.913 12 C -0.005 4.005 13 N -0.900 5.900 14 Si 1.027 2.973 15 H -0.257 1.257 16 H -0.257 1.257 17 H -0.260 1.260 18 N -0.277 5.277 19 N -0.276 5.276 20 C 0.071 3.929 21 H 0.092 0.908 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.113 0.887 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.163 0.837 29 H 0.281 0.719 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.914 7.650 -18.216 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 C -0.200 4.200 4 C -0.090 4.090 5 C -0.223 4.223 6 C -0.172 4.172 7 C 0.322 3.678 8 O -0.470 6.470 9 O -0.135 6.135 10 C -0.502 4.502 11 H 0.104 0.896 12 C -0.206 4.206 13 N -0.536 5.536 14 Si 0.844 3.156 15 H -0.181 1.181 16 H -0.181 1.181 17 H -0.184 1.184 18 N -0.115 5.115 19 N -0.065 5.065 20 C -0.067 4.067 21 H 0.111 0.889 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.131 0.869 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.180 0.820 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.879 6.921 -18.084 19.454 hybrid contribution -0.655 0.094 1.209 1.378 sum -2.534 7.015 -16.875 18.450 Atomic orbital electron populations 1.21861 0.92581 1.02404 1.03376 1.19910 0.97097 0.95719 0.90880 1.21856 1.01160 0.93742 1.03227 1.21988 0.89734 0.98916 0.98342 1.21545 1.03561 1.05292 0.91885 1.20858 0.98163 1.06302 0.91886 1.20212 0.81716 0.79208 0.86669 1.90568 1.32758 1.54765 1.68879 1.84021 1.47196 1.57016 1.25233 1.21642 1.12866 1.33303 0.82424 0.89568 1.26753 0.93844 0.93966 1.05994 1.70123 1.13395 1.30527 1.39568 0.84520 0.78921 0.79548 0.72595 1.18124 1.18062 1.18433 1.73788 1.23526 1.21245 0.92944 1.45973 1.19846 1.33278 1.07423 1.22677 0.93412 1.05101 0.85526 0.88945 0.92917 0.92957 0.86867 0.93453 0.92643 0.88869 0.81972 0.90974 0.87765 0.88623 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.79 71.98 0.63 -1.56 16 2 C -0.02 -0.26 3.09 -11.54 -0.04 -0.30 16 3 C -0.14 -1.98 9.17 71.98 0.66 -1.32 16 4 C 0.04 1.00 5.83 41.40 0.24 1.24 16 5 C -0.20 -7.44 9.96 22.42 0.22 -7.22 16 6 C -0.02 -0.81 7.17 42.41 0.30 -0.50 16 7 C 0.47 28.62 7.90 70.27 0.56 29.18 16 8 O -0.57 -35.69 16.17 19.75 0.32 -35.37 16 9 O -0.23 -15.36 9.75 11.01 0.11 -15.25 16 10 C -0.43 -28.14 9.65 67.95 0.66 -27.48 16 11 H 0.09 5.67 6.86 -2.91 -0.02 5.65 16 12 C -0.01 -0.30 5.49 84.89 0.47 0.16 16 13 N -0.90 -56.63 13.67 21.63 0.30 -56.33 16 14 Si 1.03 45.53 29.55 68.60 2.03 47.56 16 15 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 16 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 18 N -0.28 -12.50 11.99 -48.23 -0.58 -13.08 16 19 N -0.28 -8.61 3.70 -355.91 -1.32 -9.93 16 20 C 0.07 1.22 11.11 127.77 1.42 2.64 16 21 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.05 0.94 7.35 -2.39 -0.02 0.92 16 23 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.11 1.11 6.86 -2.39 -0.02 1.09 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.16 5.79 7.48 -2.91 -0.02 5.76 16 29 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.14 1.11 6.87 -2.39 -0.02 1.09 16 Total: -1.00 -88.12 285.05 7.10 -81.02 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.12 Total: 6.53 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 5.12 Total: -5.15 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -1.60 Total: -79.34 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: 0.43 Total: -50.62 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -88.12 7.10 -81.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747015244.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.538 kcal (2) G-P(sol) polarization free energy of solvation -88.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds