Wall clock time and date at job start Sun Mar 29 2020 22:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35310 * 126.12527 * 2 1 4 4 C 1.39880 * 107.92154 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.90079 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47107 * 125.00354 * 5 4 3 7 7 O 1.20820 * 120.00088 * 359.97438 * 6 5 4 8 8 O 1.34227 * 120.00034 * 180.02562 * 6 5 4 9 9 C 1.45203 * 116.99983 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46772 * 179.97438 * 9 8 6 11 11 C 1.50705 * 109.46726 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00385 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99840 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00336 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99926 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47419 * 90.00377 * 15 13 11 17 17 H 1.48500 * 109.47122 * 210.00023 * 15 13 11 18 18 H 1.48496 * 109.47214 * 330.00037 * 15 13 11 19 19 N 1.30836 * 108.19611 * 0.02562 * 4 3 2 20 20 N 1.34946 * 126.12821 * 179.68712 * 2 1 3 21 21 H 0.96999 * 126.03519 * 0.04296 * 20 2 1 22 22 H 1.09002 * 109.47152 * 89.99893 * 1 2 3 23 23 H 1.09001 * 109.46980 * 329.99994 * 1 2 3 24 24 H 1.09004 * 109.47113 * 209.99974 * 1 2 3 25 25 H 1.08008 * 126.04503 * 359.94420 * 3 2 1 26 26 H 1.08998 * 109.47156 * 245.00290 * 5 4 3 27 27 H 1.09000 * 109.47044 * 5.00488 * 5 4 3 28 28 H 1.08995 * 109.46950 * 299.99384 * 9 8 6 29 29 H 1.08995 * 109.47042 * 60.00118 * 9 8 6 30 30 H 1.09002 * 109.47390 * 299.99536 * 10 9 8 31 31 H 1.08997 * 109.47626 * 60.00121 * 10 9 8 32 32 H 0.96997 * 120.00523 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6560 0.0006 5 6 4.8543 1.5395 0.0003 6 6 5.7388 1.1746 1.1645 7 8 5.4113 0.2883 1.9175 8 8 6.8901 1.8348 1.3655 9 6 7.6919 1.4295 2.5062 10 6 8.9565 2.2883 2.5715 11 6 9.7884 1.8680 3.7557 12 1 9.4494 1.0682 4.3973 13 6 10.9830 2.5040 4.0195 14 7 11.3968 3.4770 3.2373 15 14 12.0145 1.9826 5.4869 16 1 12.9601 0.9149 5.0731 17 1 12.7783 3.1504 5.9950 18 1 11.1254 1.4681 6.5592 19 7 3.6334 -0.6524 0.0004 20 7 2.3027 -1.0899 0.0060 21 1 2.0056 -2.0133 0.0104 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5138 25 1 1.9740 2.1211 -0.0009 26 1 5.4034 1.4001 -0.9309 27 1 4.5484 2.5819 0.0891 28 1 7.1148 1.5619 3.4213 29 1 7.9702 0.3810 2.4005 30 1 9.5335 2.1556 1.6563 31 1 8.6786 3.3369 2.6770 32 1 12.2370 3.9246 3.4231 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756699202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:30 Heat of formation + Delta-G solvation = -31.282751 kcal Electronic energy + Delta-G solvation = -15861.936449 eV Core-core repulsion = 13016.837053 eV Total energy + Delta-G solvation = -2845.099396 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.39440 -39.69169 -36.05014 -33.51221 -33.28293 -31.78702 -30.33421 -28.82064 -27.16008 -24.95981 -21.94994 -20.79296 -20.58478 -19.42628 -17.60033 -17.16602 -16.14314 -15.95872 -15.64143 -14.96505 -14.45244 -14.06348 -13.85592 -13.49913 -13.15681 -13.05288 -12.46703 -12.44112 -12.29464 -12.05322 -11.15146 -10.99638 -10.69931 -10.64398 -10.63230 -10.11122 -9.60362 -9.56582 -9.38272 -9.24269 -8.71113 -8.40849 -6.07113 -4.11124 1.75591 2.53103 2.71334 2.73834 3.31002 3.35686 3.38658 3.46905 4.37776 4.42470 4.52565 4.79468 5.11113 5.12446 5.29400 5.34407 5.42048 5.48014 5.59216 5.62956 5.97653 6.16865 6.18692 6.48939 6.70544 7.10192 7.16891 7.60990 7.61444 7.67663 7.91350 8.25600 8.36717 8.94557 9.53023 11.04474 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.071789 B = 0.003648 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.939597 B = 7674.109614 C = 7858.611523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.079 3.921 3 C -0.262 4.262 4 C 0.085 3.915 5 C -0.035 4.035 6 C 0.455 3.545 7 O -0.504 6.504 8 O -0.359 6.359 9 C 0.077 3.923 10 C 0.024 3.976 11 C -0.526 4.526 12 H 0.059 0.941 13 C 0.060 3.940 14 N -0.891 5.891 15 Si 0.899 3.101 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 N -0.260 5.260 20 N -0.475 5.475 21 H 0.436 0.564 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.149 0.851 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.778 -4.275 -8.831 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.291 4.291 4 C -0.082 4.082 5 C -0.074 4.074 6 C 0.297 3.703 7 O -0.392 6.392 8 O -0.275 6.275 9 C 0.004 3.996 10 C -0.013 4.013 11 C -0.564 4.564 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.727 3.273 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 N -0.083 5.083 20 N -0.184 5.184 21 H 0.280 0.720 22 H 0.098 0.902 23 H 0.105 0.895 24 H 0.088 0.912 25 H 0.167 0.833 26 H 0.138 0.862 27 H 0.142 0.858 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.968 -5.435 -8.594 22.408 hybrid contribution -0.015 -0.114 0.927 0.934 sum -19.983 -5.549 -7.667 22.111 Atomic orbital electron populations 1.20442 0.87265 1.03963 1.03290 1.21086 0.94568 0.87778 1.01469 1.21093 0.91173 0.99322 1.17539 1.21564 0.94572 0.91607 1.00498 1.19634 0.90512 0.99726 0.97518 1.23184 0.81279 0.80012 0.85847 1.90662 1.72770 1.29685 1.46088 1.86503 1.31529 1.59168 1.50306 1.23607 0.92045 1.00116 0.83831 1.19169 0.88760 0.95265 0.98075 1.20998 1.04978 1.19136 1.11274 0.92293 1.24980 0.97513 0.94843 0.96835 1.69973 1.21849 1.23145 1.37946 0.86474 0.80208 0.78128 0.82514 1.20500 1.21060 1.19737 1.77442 0.95639 1.12467 1.22768 1.46329 1.04143 1.08206 1.59709 0.72015 0.90190 0.89532 0.91162 0.83296 0.86159 0.85815 0.92431 0.92402 0.95331 0.95325 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 10.43 36.01 0.38 -0.11 16 2 C 0.08 0.78 7.21 -82.27 -0.59 0.19 16 3 C -0.26 -2.97 10.64 -40.01 -0.43 -3.39 16 4 C 0.08 1.20 6.01 -82.40 -0.50 0.70 16 5 C -0.03 -0.45 6.39 -29.04 -0.19 -0.64 16 6 C 0.46 8.40 7.95 36.01 0.29 8.69 16 7 O -0.50 -10.90 15.31 -18.75 -0.29 -11.19 16 8 O -0.36 -7.39 10.22 -39.25 -0.40 -7.79 16 9 C 0.08 1.78 5.40 37.16 0.20 1.98 16 10 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 11 C -0.53 -15.10 9.11 -34.44 -0.31 -15.42 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 15 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 N -0.26 -4.04 12.05 33.67 0.41 -3.64 16 20 N -0.47 -5.38 7.36 33.48 0.25 -5.14 16 21 H 0.44 3.49 8.96 -182.61 -1.64 1.85 16 22 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 26 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.12 1.22 8.12 -51.93 -0.42 0.80 16 28 H 0.06 1.33 8.13 -51.93 -0.42 0.90 16 29 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 289.35 15.07 4.36 4.36 Total: -1.00 -35.41 289.35 -6.76 -42.17 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -5.40 Total: -3.65 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.40 Total: -5.86 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 1.39 Total: -34.75 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.69 Total: -18.98 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -35.41 -6.76 -42.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756699202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.884 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds