Wall clock time and date at job start Sun Mar 29 2020 22:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35310 * 126.12527 * 2 1 4 4 C 1.39880 * 107.92154 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.90079 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47107 * 125.00354 * 5 4 3 7 7 O 1.20820 * 120.00088 * 359.97438 * 6 5 4 8 8 O 1.34227 * 120.00034 * 180.02562 * 6 5 4 9 9 C 1.45203 * 116.99983 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46772 * 179.97438 * 9 8 6 11 11 C 1.50705 * 109.46726 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00385 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99840 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00336 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99926 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47419 * 90.00377 * 15 13 11 17 17 H 1.48500 * 109.47122 * 210.00023 * 15 13 11 18 18 H 1.48496 * 109.47214 * 330.00037 * 15 13 11 19 19 N 1.30836 * 108.19611 * 0.02562 * 4 3 2 20 20 N 1.34946 * 126.12821 * 179.68712 * 2 1 3 21 21 H 0.96999 * 126.03519 * 0.04296 * 20 2 1 22 22 H 1.09002 * 109.47152 * 89.99893 * 1 2 3 23 23 H 1.09001 * 109.46980 * 329.99994 * 1 2 3 24 24 H 1.09004 * 109.47113 * 209.99974 * 1 2 3 25 25 H 1.08008 * 126.04503 * 359.94420 * 3 2 1 26 26 H 1.08998 * 109.47156 * 245.00290 * 5 4 3 27 27 H 1.09000 * 109.47044 * 5.00488 * 5 4 3 28 28 H 1.08995 * 109.46950 * 299.99384 * 9 8 6 29 29 H 1.08995 * 109.47042 * 60.00118 * 9 8 6 30 30 H 1.09002 * 109.47390 * 299.99536 * 10 9 8 31 31 H 1.08997 * 109.47626 * 60.00121 * 10 9 8 32 32 H 0.96997 * 120.00523 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6560 0.0006 5 6 4.8543 1.5395 0.0003 6 6 5.7388 1.1746 1.1645 7 8 5.4113 0.2883 1.9175 8 8 6.8901 1.8348 1.3655 9 6 7.6919 1.4295 2.5062 10 6 8.9565 2.2883 2.5715 11 6 9.7884 1.8680 3.7557 12 1 9.4494 1.0682 4.3973 13 6 10.9830 2.5040 4.0195 14 7 11.3968 3.4770 3.2373 15 14 12.0145 1.9826 5.4869 16 1 12.9601 0.9149 5.0731 17 1 12.7783 3.1504 5.9950 18 1 11.1254 1.4681 6.5592 19 7 3.6334 -0.6524 0.0004 20 7 2.3027 -1.0899 0.0060 21 1 2.0056 -2.0133 0.0104 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5138 25 1 1.9740 2.1211 -0.0009 26 1 5.4034 1.4001 -0.9309 27 1 4.5484 2.5819 0.0891 28 1 7.1148 1.5619 3.4213 29 1 7.9702 0.3810 2.4005 30 1 9.5335 2.1556 1.6563 31 1 8.6786 3.3369 2.6770 32 1 12.2370 3.9246 3.4231 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756699202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:29 Heat of formation + Delta-G solvation = -55.195906 kcal Electronic energy + Delta-G solvation = -15862.973401 eV Core-core repulsion = 13016.837053 eV Total energy + Delta-G solvation = -2846.136348 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.30611 -41.23149 -37.70878 -35.44627 -34.44966 -32.64593 -32.25048 -29.96145 -27.83879 -27.00332 -23.57501 -22.50895 -21.51055 -20.56865 -18.99962 -18.36950 -18.05912 -17.56313 -17.17520 -16.47376 -15.82633 -15.30585 -14.80171 -14.61218 -14.36952 -14.22623 -13.94984 -13.57030 -13.32873 -13.02778 -12.99832 -12.83624 -12.58175 -12.55552 -11.86333 -11.59291 -11.49477 -11.45950 -11.29510 -10.61283 -10.34039 -9.53874 -8.27192 -6.40444 0.88871 1.24699 1.40150 1.42606 1.50080 1.55369 1.94264 2.10554 2.41389 3.06926 3.48745 3.75897 3.98339 4.16535 4.22161 4.28354 4.43003 4.47937 4.69182 4.70469 4.79481 4.85351 5.13193 5.23655 5.28673 5.47478 5.55235 5.66411 5.75975 6.06921 6.45529 6.71569 6.71983 6.80305 7.29153 8.85491 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.071789 B = 0.003648 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.939597 B = 7674.109614 C = 7858.611523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.090 3.910 3 C -0.280 4.280 4 C 0.066 3.934 5 C -0.025 4.025 6 C 0.454 3.546 7 O -0.538 6.538 8 O -0.363 6.363 9 C 0.092 3.908 10 C 0.032 3.968 11 C -0.553 4.553 12 H 0.062 0.938 13 C 0.007 3.993 14 N -0.926 5.926 15 Si 0.974 3.026 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.264 1.264 19 N -0.319 5.319 20 N -0.473 5.473 21 H 0.447 0.553 22 H 0.099 0.901 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.174 0.826 26 H 0.142 0.858 27 H 0.161 0.839 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.007 0.993 31 H 0.010 0.990 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.275 -4.292 -8.712 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C -0.308 4.308 4 C -0.101 4.101 5 C -0.064 4.064 6 C 0.297 3.703 7 O -0.428 6.428 8 O -0.280 6.280 9 C 0.019 3.981 10 C -0.006 4.006 11 C -0.590 4.590 12 H 0.080 0.920 13 C -0.192 4.192 14 N -0.565 5.565 15 Si 0.797 3.203 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.189 1.189 19 N -0.143 5.143 20 N -0.184 5.184 21 H 0.292 0.708 22 H 0.117 0.883 23 H 0.118 0.882 24 H 0.102 0.898 25 H 0.192 0.808 26 H 0.159 0.841 27 H 0.178 0.822 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.028 0.972 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.484 -5.459 -8.494 23.739 hybrid contribution 0.334 -0.127 0.820 0.895 sum -21.150 -5.586 -7.673 23.182 Atomic orbital electron populations 1.20613 0.83803 1.05304 1.04891 1.21823 0.96510 0.86769 0.98820 1.21479 0.90160 1.01072 1.18130 1.21840 0.95827 0.91525 1.00870 1.19840 0.89496 1.01543 0.95513 1.24283 0.80434 0.78912 0.86635 1.90644 1.73231 1.31171 1.47739 1.86501 1.32587 1.59695 1.49174 1.23108 0.91198 0.98879 0.84956 1.18978 0.90063 0.94757 0.96753 1.21379 1.05925 1.19635 1.12085 0.91968 1.25955 0.98713 0.94606 0.99942 1.70088 1.22536 1.24111 1.39755 0.85321 0.78338 0.78050 0.78577 1.19576 1.20151 1.18860 1.77332 0.98180 1.13636 1.25114 1.46378 1.03304 1.09372 1.59318 0.70758 0.88288 0.88225 0.89775 0.80840 0.84052 0.82164 0.92478 0.92824 0.97427 0.97180 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.43 71.24 0.74 0.10 16 2 C 0.09 1.58 7.21 41.40 0.30 1.87 16 3 C -0.28 -5.76 10.64 21.99 0.23 -5.53 16 4 C 0.07 1.78 6.01 43.10 0.26 2.04 16 5 C -0.03 -0.63 6.39 29.10 0.19 -0.44 16 6 C 0.45 16.69 7.95 71.24 0.57 17.25 16 7 O -0.54 -23.58 15.31 21.98 0.34 -23.24 16 8 O -0.36 -15.08 10.22 -51.38 -0.53 -15.60 16 9 C 0.09 4.35 5.40 71.98 0.39 4.74 16 10 C 0.03 1.75 5.35 29.85 0.16 1.91 16 11 C -0.55 -32.17 9.11 25.60 0.23 -31.94 16 12 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 13 C 0.01 0.40 5.46 84.65 0.46 0.86 16 14 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 15 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 19 N -0.32 -9.84 12.05 -47.38 -0.57 -10.42 16 20 N -0.47 -10.27 7.36 -48.00 -0.35 -10.63 16 21 H 0.45 6.80 8.96 -213.33 -1.91 4.88 16 22 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 23 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 25 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 26 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.16 2.74 8.12 -2.39 -0.02 2.72 16 28 H 0.06 2.68 8.13 -2.39 -0.02 2.66 16 29 H 0.05 2.56 8.13 -2.39 -0.02 2.54 16 30 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -77.65 289.35 3.95 -73.70 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -0.78 Total: 4.70 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 3.53 Total: -9.14 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -0.64 Total: -76.82 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.19 Total: -38.85 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -77.65 3.95 -73.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756699202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.505 kcal (2) G-P(sol) polarization free energy of solvation -77.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds