Wall clock time and date at job start Sun Mar 29 2020 22:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30836 * 125.90309 * 2 1 4 4 N 1.40080 * 108.20867 * 179.81600 * 3 2 1 5 5 H 0.96999 * 126.03826 * 180.22860 * 4 3 2 6 6 C 1.34946 * 107.92639 * 0.36494 * 4 3 2 7 7 C 1.50703 * 126.12821 * 179.90663 * 6 4 3 8 8 C 1.35310 * 107.74594 * 359.64128 * 6 4 3 9 9 C 1.50701 * 126.04421 * 180.20870 * 8 6 4 10 10 H 1.09004 * 109.46788 * 0.02562 * 9 8 6 11 11 C 1.53001 * 109.47527 * 119.99794 * 9 8 6 12 12 C 1.50693 * 109.47557 * 240.00189 * 9 8 6 13 13 O 1.21220 * 119.99651 * 359.97438 * 12 9 8 14 14 O 1.34309 * 120.00611 * 180.02562 * 12 9 8 15 15 C 1.34915 * 117.00503 * 180.02562 * 14 12 9 16 16 H 1.08008 * 119.99858 * 359.97438 * 15 14 12 17 17 C 1.38753 * 120.00161 * 179.97438 * 15 14 12 18 18 N 1.31435 * 120.00140 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47244 * 89.99746 * 19 17 15 21 21 H 1.48499 * 109.47244 * 210.00100 * 19 17 15 22 22 H 1.48504 * 109.46880 * 329.99710 * 19 17 15 23 23 H 1.09003 * 109.46956 * 269.95831 * 1 2 3 24 24 H 1.08999 * 109.47037 * 29.95728 * 1 2 3 25 25 H 1.09003 * 109.47071 * 149.95864 * 1 2 3 26 26 H 1.09002 * 109.47152 * 269.68605 * 7 6 4 27 27 H 1.09001 * 109.46980 * 149.68706 * 7 6 4 28 28 H 1.09004 * 109.47113 * 29.68687 * 7 6 4 29 29 H 1.08993 * 109.47452 * 180.02562 * 11 9 8 30 30 H 1.09000 * 109.46983 * 300.00233 * 11 9 8 31 31 H 1.08999 * 109.47159 * 59.99819 * 11 9 8 32 32 H 0.97001 * 120.00331 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0043 5 1 4.3908 1.2078 0.0084 6 6 3.6142 -0.7154 -0.0013 7 6 4.8350 -1.5990 -0.0015 8 6 2.3272 -1.1331 -0.0009 9 6 1.8599 -2.5658 -0.0016 10 1 2.7243 -3.2299 -0.0021 11 6 1.0168 -2.8280 1.2480 12 6 1.0280 -2.8223 -1.2317 13 8 0.8335 -1.9299 -2.0286 14 8 0.5013 -4.0394 -1.4445 15 6 -0.2325 -4.2019 -2.5649 16 1 -0.3741 -3.3729 -3.2427 17 6 -0.8052 -5.4339 -2.8465 18 7 -0.6324 -6.4428 -2.0220 19 14 -1.8218 -5.6588 -4.3975 20 1 -0.9389 -6.0937 -5.5094 21 1 -2.8643 -6.6895 -4.1610 22 1 -2.4705 -4.3716 -4.7550 23 1 -0.3633 -0.0007 1.0277 24 1 -0.3633 0.8904 -0.5132 25 1 -0.3633 -0.8896 -0.5145 26 1 5.1291 -1.8123 -1.0292 27 1 4.6077 -2.5329 0.5126 28 1 5.6513 -1.0909 0.5120 29 1 0.6792 -3.8643 1.2477 30 1 1.6185 -2.6425 2.1377 31 1 0.1525 -2.1639 1.2490 32 1 -1.0331 -7.3041 -2.2187 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776288162.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:27 Heat of formation + Delta-G solvation = -20.025763 kcal Electronic energy + Delta-G solvation = -17182.846510 eV Core-core repulsion = 14338.235254 eV Total energy + Delta-G solvation = -2844.611256 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.16931 -38.84087 -35.32115 -33.65585 -33.06883 -32.04087 -30.03985 -27.68881 -26.55515 -25.50079 -23.60832 -20.65726 -19.84004 -18.60508 -17.60514 -17.08007 -16.08950 -14.96365 -14.84326 -14.36673 -14.18045 -13.79243 -13.37936 -13.08896 -12.78191 -12.52983 -12.17774 -12.14404 -11.90641 -11.70575 -11.53157 -11.17497 -11.09181 -10.94373 -10.39281 -10.26682 -9.97166 -9.68386 -8.89779 -8.79831 -8.49818 -8.06705 -6.33812 -4.00885 2.10844 3.02632 3.10256 3.16428 3.23578 3.29482 3.65813 4.04824 4.71370 4.84237 5.00498 5.15529 5.19178 5.48932 5.52936 5.58601 5.77918 5.78728 5.90291 6.01988 6.08070 6.19599 6.42248 6.47469 6.50619 6.68534 6.91424 7.11185 7.47705 7.54674 8.01067 8.04230 8.83683 9.15972 9.98150 10.84534 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.036347 B = 0.006638 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.163580 B = 4217.356137 C = 4400.720663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.118 3.882 3 N -0.308 5.308 4 N -0.484 5.484 5 H 0.433 0.567 6 C 0.085 3.915 7 C -0.093 4.093 8 C -0.203 4.203 9 C 0.002 3.998 10 H 0.096 0.904 11 C -0.139 4.139 12 C 0.404 3.596 13 O -0.545 6.545 14 O -0.216 6.216 15 C -0.379 4.379 16 H 0.094 0.906 17 C 0.042 3.958 18 N -0.868 5.868 19 Si 0.939 3.061 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.267 1.267 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.568 7.286 6.444 12.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 N -0.132 5.132 4 N -0.192 5.192 5 H 0.276 0.724 6 C -0.043 4.043 7 C -0.152 4.152 8 C -0.215 4.215 9 C -0.018 4.018 10 H 0.114 0.886 11 C -0.196 4.196 12 C 0.249 3.751 13 O -0.441 6.441 14 O -0.123 6.123 15 C -0.456 4.456 16 H 0.111 0.889 17 C -0.162 4.162 18 N -0.505 5.505 19 Si 0.764 3.236 20 H -0.200 1.200 21 H -0.204 1.204 22 H -0.192 1.192 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.455 8.539 6.252 12.945 hybrid contribution 0.051 -0.665 -0.884 1.108 sum 7.506 7.873 5.367 12.130 Atomic orbital electron populations 1.20363 0.86942 1.04540 1.01935 1.22050 0.96864 0.89735 0.96203 1.77214 0.86317 1.22360 1.27298 1.45978 1.07250 1.04498 1.61444 0.72389 1.20736 0.96649 0.85056 1.01830 1.20475 0.92678 0.98446 1.03553 1.19231 0.91135 0.95090 1.15995 1.18958 0.98022 0.91915 0.92913 0.88593 1.21766 0.99545 1.03191 0.95107 1.23112 0.81781 0.82479 0.87695 1.90556 1.60488 1.45626 1.47422 1.83880 1.56709 1.29848 1.41871 1.21188 1.28137 0.97948 0.98307 0.88871 1.25273 0.97537 0.94356 0.99002 1.69985 1.42849 1.01741 1.35957 0.85739 0.79055 0.78504 0.80293 1.20041 1.20412 1.19177 0.91176 0.91376 0.88936 0.90095 0.89390 0.91322 0.90739 0.92434 0.92181 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 8.57 36.00 0.31 -1.07 16 2 C 0.12 2.20 6.53 -82.40 -0.54 1.66 16 3 N -0.31 -5.48 12.70 33.67 0.43 -5.06 16 4 N -0.48 -6.96 7.36 33.48 0.25 -6.72 16 5 H 0.43 4.49 8.96 -182.61 -1.64 2.85 16 6 C 0.09 1.27 7.21 -82.27 -0.59 0.68 16 7 C -0.09 -0.98 10.06 36.01 0.36 -0.62 16 8 C -0.20 -3.65 4.37 -105.05 -0.46 -4.11 16 9 C 0.00 0.05 2.99 -92.93 -0.28 -0.23 16 10 H 0.10 1.62 6.79 -51.93 -0.35 1.27 16 11 C -0.14 -2.29 8.99 37.16 0.33 -1.96 16 12 C 0.40 9.89 6.24 36.00 0.22 10.11 16 13 O -0.54 -14.53 13.09 -19.06 -0.25 -14.78 16 14 O -0.22 -6.09 9.65 -20.68 -0.20 -6.29 16 15 C -0.38 -11.19 9.65 30.92 0.30 -10.89 16 16 H 0.09 2.78 6.86 -52.48 -0.36 2.42 16 17 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16 18 N -0.87 -25.33 13.67 55.48 0.76 -24.58 16 19 Si 0.94 21.44 29.55 -169.99 -5.02 16.42 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H 0.07 1.02 7.92 -51.93 -0.41 0.61 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.09 1.85 5.30 -51.93 -0.28 1.58 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.09 0.88 7.14 -51.93 -0.37 0.51 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.99 6.16 -51.93 -0.32 0.67 16 32 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 275.55 15.07 4.15 4.15 Total: -1.00 -34.75 275.55 -5.30 -40.05 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.97 Total: 2.15 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -0.44 Total: -5.34 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 1.43 Total: -36.35 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.45 Total: -21.08 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.75 -5.30 -40.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776288162.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.024 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds