Wall clock time and date at job start Sun Mar 29 2020 22:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30836 * 125.90309 * 2 1 4 4 N 1.40080 * 108.20867 * 179.81600 * 3 2 1 5 5 H 0.96999 * 126.03826 * 180.22860 * 4 3 2 6 6 C 1.34946 * 107.92639 * 0.36494 * 4 3 2 7 7 C 1.50703 * 126.12821 * 179.90663 * 6 4 3 8 8 C 1.35310 * 107.74594 * 359.64128 * 6 4 3 9 9 C 1.50701 * 126.04421 * 180.20870 * 8 6 4 10 10 H 1.09004 * 109.46788 * 0.02562 * 9 8 6 11 11 C 1.53001 * 109.47527 * 119.99794 * 9 8 6 12 12 C 1.50693 * 109.47557 * 240.00189 * 9 8 6 13 13 O 1.21220 * 119.99651 * 359.97438 * 12 9 8 14 14 O 1.34309 * 120.00611 * 180.02562 * 12 9 8 15 15 C 1.34915 * 117.00503 * 180.02562 * 14 12 9 16 16 H 1.08008 * 119.99858 * 359.97438 * 15 14 12 17 17 C 1.38753 * 120.00161 * 179.97438 * 15 14 12 18 18 N 1.31435 * 120.00140 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47244 * 89.99746 * 19 17 15 21 21 H 1.48499 * 109.47244 * 210.00100 * 19 17 15 22 22 H 1.48504 * 109.46880 * 329.99710 * 19 17 15 23 23 H 1.09003 * 109.46956 * 269.95831 * 1 2 3 24 24 H 1.08999 * 109.47037 * 29.95728 * 1 2 3 25 25 H 1.09003 * 109.47071 * 149.95864 * 1 2 3 26 26 H 1.09002 * 109.47152 * 269.68605 * 7 6 4 27 27 H 1.09001 * 109.46980 * 149.68706 * 7 6 4 28 28 H 1.09004 * 109.47113 * 29.68687 * 7 6 4 29 29 H 1.08993 * 109.47452 * 180.02562 * 11 9 8 30 30 H 1.09000 * 109.46983 * 300.00233 * 11 9 8 31 31 H 1.08999 * 109.47159 * 59.99819 * 11 9 8 32 32 H 0.97001 * 120.00331 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0043 5 1 4.3908 1.2078 0.0084 6 6 3.6142 -0.7154 -0.0013 7 6 4.8350 -1.5990 -0.0015 8 6 2.3272 -1.1331 -0.0009 9 6 1.8599 -2.5658 -0.0016 10 1 2.7243 -3.2299 -0.0021 11 6 1.0168 -2.8280 1.2480 12 6 1.0280 -2.8223 -1.2317 13 8 0.8335 -1.9299 -2.0286 14 8 0.5013 -4.0394 -1.4445 15 6 -0.2325 -4.2019 -2.5649 16 1 -0.3741 -3.3729 -3.2427 17 6 -0.8052 -5.4339 -2.8465 18 7 -0.6324 -6.4428 -2.0220 19 14 -1.8218 -5.6588 -4.3975 20 1 -0.9389 -6.0937 -5.5094 21 1 -2.8643 -6.6895 -4.1610 22 1 -2.4705 -4.3716 -4.7550 23 1 -0.3633 -0.0007 1.0277 24 1 -0.3633 0.8904 -0.5132 25 1 -0.3633 -0.8896 -0.5145 26 1 5.1291 -1.8123 -1.0292 27 1 4.6077 -2.5329 0.5126 28 1 5.6513 -1.0909 0.5120 29 1 0.6792 -3.8643 1.2477 30 1 1.6185 -2.6425 2.1377 31 1 0.1525 -2.1639 1.2490 32 1 -1.0331 -7.3041 -2.2187 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776288162.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:26 Heat of formation + Delta-G solvation = -43.918152 kcal Electronic energy + Delta-G solvation = -17183.882562 eV Core-core repulsion = 14338.235254 eV Total energy + Delta-G solvation = -2845.647308 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.46944 -40.79440 -37.28273 -35.23602 -34.31210 -34.14494 -31.25612 -29.00675 -27.75155 -27.51551 -25.21648 -22.34562 -21.12815 -20.03951 -19.75120 -18.62614 -17.74952 -16.69533 -16.43623 -16.20835 -15.84016 -15.23090 -14.68101 -14.47925 -14.16933 -13.73786 -13.60480 -13.50394 -13.41569 -13.25471 -13.01459 -12.86249 -12.53263 -12.34428 -12.14622 -12.11015 -11.88462 -11.35248 -10.75144 -10.62327 -10.14641 -9.36563 -8.47064 -6.25356 0.88428 1.35576 1.36184 1.51924 1.65516 1.76617 1.99402 2.19865 2.98429 3.04649 3.65328 3.76050 4.10286 4.20173 4.27417 4.38942 4.55459 4.70625 4.73754 4.76459 4.82651 4.96247 5.06731 5.14157 5.17347 5.21642 5.33534 5.35132 5.70638 5.91466 6.48261 6.74921 6.80478 6.99167 7.90864 8.73612 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.036347 B = 0.006638 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.163580 B = 4217.356137 C = 4400.720663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.098 3.902 3 N -0.332 5.332 4 N -0.468 5.468 5 H 0.451 0.549 6 C 0.107 3.893 7 C -0.094 4.094 8 C -0.242 4.242 9 C 0.013 3.987 10 H 0.117 0.883 11 C -0.132 4.132 12 C 0.403 3.597 13 O -0.570 6.570 14 O -0.243 6.243 15 C -0.416 4.416 16 H 0.077 0.923 17 C -0.002 4.002 18 N -0.903 5.903 19 Si 1.010 2.990 20 H -0.262 1.262 21 H -0.260 1.260 22 H -0.267 1.267 23 H 0.094 0.906 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.885 7.389 6.799 13.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 N -0.156 5.156 4 N -0.178 5.178 5 H 0.298 0.702 6 C -0.023 4.023 7 C -0.152 4.152 8 C -0.253 4.253 9 C -0.007 4.007 10 H 0.135 0.865 11 C -0.190 4.190 12 C 0.251 3.749 13 O -0.467 6.467 14 O -0.152 6.152 15 C -0.492 4.492 16 H 0.094 0.906 17 C -0.202 4.202 18 N -0.540 5.540 19 Si 0.830 3.170 20 H -0.187 1.187 21 H -0.184 1.184 22 H -0.191 1.191 23 H 0.113 0.887 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.798 8.671 6.625 14.017 hybrid contribution -0.242 -0.594 -0.948 1.144 sum 8.556 8.077 5.677 13.065 Atomic orbital electron populations 1.20282 0.87154 1.02904 1.03066 1.22218 0.97281 0.90441 0.96873 1.77139 0.87698 1.22489 1.28267 1.46019 1.06974 1.04869 1.59923 0.70156 1.21305 0.97121 0.85412 0.98502 1.20687 0.91743 0.98331 1.04487 1.19283 0.92541 0.94240 1.19278 1.19017 0.97811 0.93339 0.90552 0.86483 1.21735 0.99708 1.01988 0.95520 1.24389 0.80759 0.80959 0.88839 1.90522 1.61239 1.46071 1.48893 1.83905 1.57595 1.31854 1.41804 1.21323 1.30231 0.98411 0.99220 0.90558 1.26386 0.98029 0.93373 1.02449 1.70063 1.43695 1.02413 1.37867 0.84725 0.77650 0.78750 0.75878 1.18686 1.18434 1.19116 0.88716 0.91167 0.92196 0.89653 0.88457 0.87663 0.92299 0.88799 0.92741 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.67 8.57 71.23 0.61 -2.06 16 2 C 0.10 3.59 6.53 43.10 0.28 3.87 16 3 N -0.33 -11.42 12.70 -47.38 -0.60 -12.02 16 4 N -0.47 -12.32 7.36 -48.00 -0.35 -12.67 16 5 H 0.45 7.96 8.96 -213.33 -1.91 6.05 16 6 C 0.11 2.89 7.21 41.40 0.30 3.19 16 7 C -0.09 -1.63 10.06 71.24 0.72 -0.91 16 8 C -0.24 -8.40 4.37 -20.14 -0.09 -8.49 16 9 C 0.01 0.48 2.99 -12.29 -0.04 0.45 16 10 H 0.12 3.78 6.79 -2.38 -0.02 3.76 16 11 C -0.13 -4.28 8.99 71.98 0.65 -3.64 16 12 C 0.40 20.30 6.24 71.23 0.44 20.74 16 13 O -0.57 -31.54 13.09 20.74 0.27 -31.26 16 14 O -0.24 -14.22 9.65 14.95 0.14 -14.08 16 15 C -0.42 -25.36 9.65 67.94 0.66 -24.71 16 16 H 0.08 4.77 6.86 -2.91 -0.02 4.75 16 17 C 0.00 -0.14 5.49 84.88 0.47 0.33 16 18 N -0.90 -53.25 13.67 21.62 0.30 -52.95 16 19 Si 1.01 43.99 29.55 68.60 2.03 46.02 16 20 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 H 0.09 2.75 7.92 -2.39 -0.02 2.73 16 24 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.06 2.50 5.30 -2.39 -0.01 2.49 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.10 1.56 7.14 -2.39 -0.02 1.54 16 28 H 0.10 1.08 8.14 -2.38 -0.02 1.07 16 29 H 0.06 2.07 8.11 -2.39 -0.02 2.05 16 30 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.05 1.80 6.16 -2.39 -0.01 1.78 16 32 H 0.28 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -77.44 275.55 5.02 -72.42 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -0.76 Total: 15.78 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 4.00 Total: -11.23 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -0.66 Total: -77.64 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: 0.42 Total: -45.34 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -77.44 5.02 -72.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776288162.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.497 kcal (2) G-P(sol) polarization free energy of solvation -77.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds