Wall clock time and date at job start Sun Mar 29 2020 22:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47347 * 270.00598 * 3 2 1 5 5 H 1.48501 * 109.46986 * 30.00200 * 3 2 1 6 6 H 1.48503 * 109.47358 * 150.00035 * 3 2 1 7 7 C 1.37878 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00278 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00043 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47029 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46832 * 180.02562 * 10 9 7 12 12 O 1.45198 * 109.46938 * 180.02562 * 11 10 9 13 13 C 1.34235 * 117.00012 * 180.02562 * 12 11 10 14 14 O 1.20827 * 119.99487 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99970 * 180.02562 * 13 12 11 16 16 C 1.50698 * 109.47030 * 179.97438 * 15 13 12 17 17 C 1.39870 * 125.89873 * 124.99889 * 16 15 13 18 18 C 1.35318 * 107.92236 * 179.76106 * 17 16 15 19 19 N 1.34948 * 107.74290 * 0.42279 * 18 17 16 20 20 H 0.97001 * 126.03958 * 179.84649 * 19 18 17 21 21 N 1.30835 * 125.89830 * 305.02686 * 16 15 13 22 22 H 0.97002 * 119.99685 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.46856 * 60.00170 * 9 7 2 24 24 H 1.08993 * 109.46846 * 300.00039 * 9 7 2 25 25 H 1.08994 * 109.47144 * 59.99840 * 10 9 7 26 26 H 1.09001 * 109.47296 * 300.00066 * 10 9 7 27 27 H 1.08994 * 109.47474 * 59.99936 * 11 10 9 28 28 H 1.09002 * 109.47150 * 299.99496 * 11 10 9 29 29 H 1.09002 * 109.47553 * 59.99495 * 15 13 12 30 30 H 1.09004 * 109.47119 * 299.99929 * 15 13 12 31 31 H 1.08008 * 126.03860 * 0.02562 * 17 16 15 32 32 H 1.07999 * 126.12849 * 180.26834 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 8 2.4237 -6.0907 -0.0031 13 6 1.9106 -7.3312 -0.0042 14 8 0.7128 -7.4894 -0.0042 15 6 2.8286 -8.5263 -0.0043 16 6 2.0078 -9.7901 -0.0051 17 6 2.1065 -10.8315 -0.9336 18 6 1.2081 -11.7831 -0.5890 19 7 0.5573 -11.3546 0.5128 20 1 -0.1450 -11.8312 0.9823 21 7 1.0795 -10.1025 0.8624 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8725 -3.6048 0.8876 26 1 2.8712 -3.6040 -0.8923 27 1 0.8531 -5.0442 -0.8921 28 1 0.8539 -5.0455 0.8878 29 1 3.4569 -8.5020 0.8860 30 1 3.4581 -8.5008 -0.8939 31 1 2.7834 -10.8713 -1.7743 32 1 1.0402 -12.7169 -1.1050 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787782998.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:01 Heat of formation + Delta-G solvation = -53.681896 kcal Electronic energy + Delta-G solvation = -15732.234563 eV Core-core repulsion = 12886.163867 eV Total energy + Delta-G solvation = -2846.070696 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.18740 -41.24871 -37.82871 -35.92139 -34.13677 -33.60010 -30.85662 -30.15265 -28.71111 -25.31339 -23.07163 -22.15475 -22.07226 -20.48159 -19.04796 -18.73872 -18.38812 -17.73486 -17.14070 -16.48842 -15.91409 -15.40383 -15.01188 -14.49324 -14.37758 -14.13399 -14.02150 -13.71340 -13.57853 -13.06739 -12.80032 -12.50265 -12.36176 -12.05013 -11.79075 -11.60849 -11.39449 -11.38488 -11.21059 -10.57185 -10.43437 -9.62855 -8.21408 -6.33246 0.95962 1.22740 1.41930 1.43939 1.52088 1.55823 2.00588 2.11962 2.42408 3.12465 3.53174 3.83614 3.99634 4.03773 4.08747 4.36361 4.42288 4.49911 4.74325 4.80901 4.86924 4.89629 5.09095 5.10583 5.43927 5.54537 5.64029 5.69065 5.80469 6.19353 6.50413 6.73738 6.75744 6.83286 7.36417 8.91022 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.085534 B = 0.003344 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.276463 B = 8371.121779 C = 8566.366539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.079 3.921 12 O -0.355 6.355 13 C 0.455 3.545 14 O -0.538 6.538 15 C -0.024 4.024 16 C 0.059 3.941 17 C -0.280 4.280 18 C 0.069 3.931 19 N -0.476 5.476 20 H 0.449 0.551 21 N -0.324 5.324 22 H 0.264 0.736 23 H -0.004 1.004 24 H -0.006 1.006 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.143 0.857 30 H 0.163 0.837 31 H 0.176 0.824 32 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.091 -24.480 -2.162 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.012 4.012 10 C -0.130 4.130 11 C 0.006 3.994 12 O -0.272 6.272 13 C 0.298 3.702 14 O -0.427 6.427 15 C -0.063 4.063 16 C -0.108 4.108 17 C -0.309 4.309 18 C -0.079 4.079 19 N -0.185 5.185 20 H 0.295 0.705 21 N -0.148 5.148 22 H 0.073 0.927 23 H 0.014 0.986 24 H 0.013 0.987 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.161 0.839 30 H 0.181 0.819 31 H 0.193 0.807 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.956 -24.021 -1.129 24.774 hybrid contribution -0.441 0.568 -0.353 0.801 sum 5.515 -23.452 -1.482 24.138 Atomic orbital electron populations 1.70109 1.07978 1.27937 1.51523 1.26045 0.95796 1.03647 0.94575 0.85359 0.78639 0.77948 0.78572 1.19630 1.20886 1.18426 1.21640 0.93827 0.91797 1.50810 0.91472 1.18944 0.94319 0.92673 0.95309 1.21454 0.98665 0.90169 1.02742 1.23076 0.91034 0.83935 1.01404 1.86470 1.41721 1.15319 1.83659 1.24325 0.89008 0.85145 0.71685 1.90684 1.18897 1.86951 1.46205 1.19857 0.94853 0.81728 1.09857 1.21946 0.96444 0.97038 0.95357 1.21809 1.08339 0.95281 1.05446 1.23344 0.93490 1.01418 0.89631 1.46456 1.32821 1.15031 1.24214 0.70489 1.77329 1.14353 0.97855 1.25295 0.92695 0.98597 0.98749 0.91374 0.91109 0.92198 0.92583 0.83899 0.81935 0.80694 0.76078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.80 13.29 21.45 0.28 -57.51 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.54 -31.13 9.11 25.60 0.23 -30.89 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 9 C 0.02 1.33 4.97 29.85 0.15 1.48 16 10 C -0.09 -3.94 5.53 30.60 0.17 -3.77 16 11 C 0.08 3.09 5.47 71.98 0.39 3.48 16 12 O -0.36 -11.86 10.22 -51.47 -0.53 -12.38 16 13 C 0.45 14.20 7.95 71.24 0.57 14.76 16 14 O -0.54 -21.28 15.31 21.96 0.34 -20.95 16 15 C -0.02 -0.48 6.39 29.10 0.19 -0.30 16 16 C 0.06 1.35 6.02 43.10 0.26 1.61 16 17 C -0.28 -4.55 10.72 21.99 0.24 -4.32 16 18 C 0.07 0.87 11.99 83.54 1.00 1.87 16 19 N -0.48 -8.52 7.36 -57.59 -0.42 -8.94 16 20 H 0.45 5.20 8.96 -213.33 -1.91 3.29 16 21 N -0.32 -8.88 12.05 -47.39 -0.57 -9.46 16 22 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 23 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 24 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 25 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.06 2.39 8.13 -2.39 -0.02 2.37 16 28 H 0.06 2.28 8.13 -2.39 -0.02 2.26 16 29 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.16 1.93 8.12 -2.38 -0.02 1.91 16 31 H 0.18 1.77 8.06 -2.91 -0.02 1.74 16 32 H 0.22 0.53 8.06 -2.91 -0.02 0.50 16 Total: -1.00 -79.04 288.92 4.00 -75.04 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -0.79 Total: 3.56 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 3.66 Total: -15.77 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -0.71 Total: -75.91 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.19 Total: -33.33 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -79.04 4.00 -75.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787782998.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.360 kcal (2) G-P(sol) polarization free energy of solvation -79.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds