Wall clock time and date at job start Sun Mar 29 2020 23:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47090 * 230.39872 * 3 2 1 5 5 C 1.36934 * 120.00345 * 264.23082 * 4 3 2 6 6 H 1.07998 * 120.00097 * 196.86775 * 5 4 3 7 7 C 1.38809 * 119.99983 * 16.86969 * 5 4 3 8 8 N 1.31625 * 119.99969 * 22.14563 * 7 5 4 9 9 Si 1.86805 * 120.00196 * 202.15111 * 7 5 4 10 10 H 1.48493 * 109.47067 * 89.99562 * 9 7 5 11 11 H 1.48496 * 109.47009 * 210.00070 * 9 7 5 12 12 H 1.48501 * 109.46660 * 329.99625 * 9 7 5 13 13 C 1.46510 * 119.99684 * 84.22778 * 4 3 2 14 14 C 1.52993 * 109.47245 * 270.00189 * 13 4 3 15 15 N 1.46498 * 109.47025 * 180.02562 * 14 13 4 16 16 C 1.47098 * 125.55977 * 89.99827 * 15 14 13 17 17 C 1.54091 * 103.77322 * 180.02562 * 16 15 14 18 18 O 1.45695 * 104.13574 * 359.92947 * 17 16 15 19 19 C 1.34002 * 125.56178 * 270.02158 * 15 14 13 20 20 O 1.21516 * 123.06697 * 0.02746 * 19 15 14 21 21 H 4.40638 * 5.51359 * 180.02562 * 4 1 2 22 22 H 1.08998 * 109.46819 * 110.40106 * 3 2 1 23 23 H 1.08999 * 109.47416 * 350.39934 * 3 2 1 24 24 H 0.96996 * 119.99628 * 179.97438 * 8 7 5 25 25 H 1.09005 * 109.46672 * 149.99690 * 13 4 3 26 26 H 1.09003 * 109.46881 * 30.00415 * 13 4 3 27 27 H 1.08993 * 109.47402 * 59.99967 * 14 13 4 28 28 H 1.09003 * 109.47366 * 299.99929 * 14 13 4 29 29 H 1.08999 * 110.56398 * 61.45286 * 16 15 14 30 30 H 1.08995 * 110.68802 * 298.65484 * 16 15 14 31 31 H 1.09003 * 110.51958 * 118.63787 * 17 16 15 32 32 H 1.09004 * 110.52300 * 241.22668 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8813 1.0642 5 6 3.4740 2.1767 0.7789 6 1 4.0786 2.7417 1.4730 7 6 3.0416 2.7638 -0.4022 8 7 1.9882 2.2836 -1.0287 9 14 3.9547 4.2351 -1.1029 10 1 5.0237 3.7637 -2.0194 11 1 3.0047 5.0963 -1.8519 12 1 4.5613 5.0150 0.0057 13 6 3.2580 0.3760 2.4338 14 6 1.9480 0.6161 3.1867 15 7 2.0723 0.1114 4.5563 16 6 2.5464 0.8858 5.7136 17 6 2.4765 -0.1183 6.8804 18 8 1.9743 -1.3411 6.2679 19 6 1.7731 -1.1311 4.9591 20 8 1.3567 -1.9898 4.2069 21 1 -1.0501 -0.0003 -0.0001 22 1 3.0091 0.3591 -0.9632 23 1 3.0099 -1.0124 0.1714 24 1 1.6859 2.6941 -1.8538 25 1 4.0697 0.8974 2.9413 26 1 3.4722 -0.6925 2.4088 27 1 1.1364 0.0948 2.6792 28 1 1.7338 1.6846 3.2116 29 1 1.8902 1.7359 5.9003 30 1 3.5716 1.2216 5.5584 31 1 3.4677 -0.2820 7.3035 32 1 1.7882 0.2351 7.6481 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799199835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:41 Heat of formation + Delta-G solvation = -0.852603 kcal Electronic energy + Delta-G solvation = -17043.864737 eV Core-core repulsion = 14200.084891 eV Total energy + Delta-G solvation = -2843.779846 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.43745 -38.45909 -38.14542 -36.41828 -33.55368 -33.24503 -31.13644 -29.46958 -27.93469 -25.76410 -24.42636 -23.00071 -21.67359 -19.37368 -18.56014 -18.13510 -18.08115 -17.60846 -16.87575 -16.14377 -15.63124 -15.40150 -15.12644 -15.01330 -14.53775 -14.31113 -14.03254 -13.31235 -13.17597 -13.16673 -13.00770 -12.67324 -12.18917 -12.12768 -11.91418 -11.64473 -11.58706 -10.82160 -10.73827 -10.36672 -9.96852 -8.96209 -7.82749 -5.26362 1.44570 1.51279 1.55712 1.61563 1.64912 2.30808 2.52993 2.60523 2.68495 3.30270 3.42219 3.74865 3.80474 4.00933 4.07640 4.32939 4.46109 4.54425 4.62773 4.70890 4.80840 4.88812 5.05787 5.09981 5.27608 5.45266 5.61807 5.68762 6.26568 6.40497 6.95941 7.07396 7.33047 7.78933 8.23684 9.19119 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.030927 B = 0.007004 C = 0.006063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.146229 B = 3996.739303 C = 4617.214179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.127 4.127 3 C 0.268 3.732 4 N -0.594 5.594 5 C -0.272 4.272 6 H 0.086 0.914 7 C -0.044 4.044 8 N -0.914 5.914 9 Si 0.964 3.036 10 H -0.289 1.289 11 H -0.304 1.304 12 H -0.267 1.267 13 C 0.141 3.859 14 C 0.139 3.861 15 N -0.621 5.621 16 C 0.058 3.942 17 C 0.040 3.960 18 O -0.347 6.347 19 C 0.633 3.367 20 O -0.580 6.580 21 H 0.218 0.782 22 H 0.075 0.925 23 H 0.055 0.945 24 H 0.247 0.753 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.217 0.138 14.530 14.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.130 4.130 3 C 0.142 3.858 4 N -0.314 5.314 5 C -0.401 4.401 6 H 0.104 0.896 7 C -0.241 4.241 8 N -0.558 5.558 9 Si 0.793 3.207 10 H -0.216 1.216 11 H -0.231 1.231 12 H -0.191 1.191 13 C 0.014 3.986 14 C 0.016 3.984 15 N -0.368 5.368 16 C -0.064 4.064 17 C -0.034 4.034 18 O -0.258 6.258 19 C 0.387 3.613 20 O -0.469 6.469 21 H 0.235 0.765 22 H 0.093 0.907 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.153 0.847 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.971 -0.401 14.158 14.472 hybrid contribution -0.312 0.916 -0.867 1.299 sum 2.659 0.515 13.291 13.565 Atomic orbital electron populations 1.24943 0.96356 1.06243 1.03997 1.24594 0.96041 0.95258 0.97103 1.17769 0.82899 0.91738 0.93376 1.44308 1.74699 1.09783 1.02642 1.19556 1.25959 0.89763 1.04836 0.89628 1.25622 0.97056 1.01055 1.00356 1.70312 1.22750 1.43983 1.18747 0.85318 0.77676 0.79207 0.78452 1.21577 1.23103 1.19110 1.21281 0.95299 0.97396 0.84631 1.22042 1.00482 0.98840 0.77043 1.48288 1.66786 1.11052 1.10702 1.23201 1.03908 0.96115 0.83196 1.24769 1.04255 0.78974 0.95364 1.87301 1.79674 1.38827 1.19951 1.18781 0.77385 0.83385 0.81737 1.90990 1.52598 1.48758 1.54599 0.76502 0.90694 0.92751 0.94342 0.91069 0.94128 0.93333 0.90004 0.87246 0.86966 0.84707 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -14.03 19.25 74.32 1.43 -12.60 16 2 C -0.13 -6.42 10.54 31.12 0.33 -6.09 16 3 C 0.27 13.09 5.45 84.57 0.46 13.55 16 4 N -0.59 -28.24 2.50 -712.56 -1.78 -30.02 16 5 C -0.27 -13.71 9.66 84.03 0.81 -12.90 16 6 H 0.09 4.07 7.90 -2.91 -0.02 4.05 16 7 C -0.04 -2.32 4.85 84.86 0.41 -1.90 16 8 N -0.91 -51.32 9.50 21.65 0.21 -51.11 16 9 Si 0.96 42.60 29.61 68.60 2.03 44.63 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 13 C 0.14 5.56 6.02 86.37 0.52 6.08 16 14 C 0.14 5.24 6.19 86.38 0.53 5.78 16 15 N -0.62 -18.85 2.96 -951.03 -2.82 -21.67 16 16 C 0.06 0.97 7.70 86.63 0.67 1.64 16 17 C 0.04 0.53 8.22 72.35 0.59 1.12 16 18 O -0.35 -9.56 11.11 -50.07 -0.56 -10.12 16 19 C 0.63 22.50 8.85 129.91 1.15 23.65 16 20 O -0.58 -26.74 17.55 19.62 0.34 -26.40 16 21 H 0.22 8.55 7.80 -4.41 -0.03 8.51 16 22 H 0.08 3.98 6.42 -2.39 -0.02 3.96 16 23 H 0.05 2.42 7.98 -2.39 -0.02 2.40 16 24 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 25 H 0.07 2.49 8.03 -2.38 -0.02 2.48 16 26 H 0.04 1.64 7.95 -2.39 -0.02 1.62 16 27 H 0.05 2.19 6.99 -2.39 -0.02 2.18 16 28 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.13 0.95 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -71.33 283.37 5.44 -65.89 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.11 Total: 10.46 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 6.91 Total: 18.34 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -4.40 Total: -102.80 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.21 Total: -36.51 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -71.33 5.44 -65.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799199835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.033 kcal (2) G-P(sol) polarization free energy of solvation -71.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds