Wall clock time and date at job start Sun Mar 29 2020 21:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 119.99633 * 2 1 4 4 H 1.48500 * 109.47001 * 239.99981 * 3 2 1 5 5 H 1.48496 * 109.47164 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46855 * 120.00293 * 3 2 1 7 7 C 1.38950 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99755 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99728 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00221 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99830 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47148 * 179.97438 * 12 10 9 14 14 C 1.34773 * 119.99969 * 179.72251 * 13 12 10 15 15 O 1.21617 * 120.00330 * 0.02562 * 14 13 12 16 16 C 1.47106 * 120.00040 * 180.02562 * 14 13 12 17 17 C 1.32986 * 120.00138 * 180.02562 * 16 14 13 18 18 C 1.51407 * 136.31548 * 359.62331 * 17 16 14 19 19 C 1.53385 * 87.51751 * 206.06276 * 18 17 16 20 20 C 1.51413 * 136.31796 * 180.02562 * 17 16 14 21 21 H 0.96994 * 120.00439 * 359.97438 * 1 2 3 22 22 H 0.96998 * 120.00112 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.47545 * 60.00214 * 12 10 9 24 24 H 1.08998 * 109.47669 * 300.00156 * 12 10 9 25 25 H 0.97005 * 119.99811 * 0.02562 * 13 12 10 26 26 H 1.07998 * 119.99541 * 0.02562 * 16 14 13 27 27 H 1.08993 * 113.56307 * 320.64490 * 18 17 16 28 28 H 1.08998 * 113.55925 * 91.38375 * 18 17 16 29 29 H 1.09004 * 113.96422 * 220.29494 * 19 18 17 30 30 H 1.08996 * 113.59956 * 88.79878 * 19 18 17 31 31 H 1.09001 * 113.55355 * 268.61999 * 20 17 16 32 32 H 1.08995 * 113.55880 * 39.35111 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1960 -5.9764 -0.0027 14 6 1.7467 -7.2471 0.0024 15 8 0.5511 -7.4694 0.0069 16 6 2.7027 -8.3652 0.0025 17 6 2.2594 -9.6190 0.0070 18 6 0.9086 -10.3027 0.0195 19 6 1.5956 -11.5007 0.6870 20 6 2.8804 -10.9999 0.0092 21 1 -0.4850 0.8400 0.0004 22 1 0.3534 -2.3906 -0.0016 23 1 0.6176 -4.9205 -0.8924 24 1 0.6169 -4.9209 0.8875 25 1 3.1497 -5.7991 -0.0022 26 1 3.7644 -8.1678 -0.0011 27 1 0.1768 -9.8100 0.6596 28 1 0.5217 -10.5214 -0.9757 29 1 1.2527 -12.4684 0.3206 30 1 1.6194 -11.4396 1.7750 31 1 3.0346 -11.4098 -0.9890 32 1 3.7652 -11.0787 0.6407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804821078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:59 Heat of formation + Delta-G solvation = -39.484959 kcal Electronic energy + Delta-G solvation = -15880.769195 eV Core-core repulsion = 13035.314125 eV Total energy + Delta-G solvation = -2845.455070 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.72889 -38.60537 -37.82277 -34.40048 -33.60626 -31.41040 -30.97281 -27.60779 -25.90512 -24.66291 -23.07208 -20.50206 -19.63100 -18.42409 -17.89431 -16.98125 -15.86627 -15.64093 -15.40860 -15.09195 -14.52289 -14.42310 -13.93022 -13.70360 -13.40258 -12.61460 -12.20244 -12.12121 -11.91955 -11.79877 -11.62441 -11.15130 -11.09809 -10.63002 -10.50217 -10.30632 -9.62032 -9.55617 -9.26200 -8.68513 -8.62145 -8.09430 -6.50732 -3.92860 1.39758 3.14278 3.21804 3.24845 3.41524 3.50115 3.75912 4.11322 4.31769 4.39477 4.61530 4.89850 4.93734 5.17752 5.21259 5.37202 5.46162 5.54523 5.63420 5.86052 5.94371 5.98820 6.06364 6.08845 6.19895 6.56735 6.73936 7.46429 7.90430 7.92820 8.45525 8.53906 9.05159 9.40084 9.88176 10.66157 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.083453 B = 0.003747 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.439426 B = 7471.767446 C = 7758.054659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.110 3.890 13 N -0.704 5.704 14 C 0.546 3.454 15 O -0.553 6.553 16 C -0.189 4.189 17 C -0.070 4.070 18 C -0.105 4.105 19 C -0.143 4.143 20 C -0.108 4.108 21 H 0.275 0.725 22 H 0.396 0.604 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.411 0.589 26 H 0.133 0.867 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.465 -17.220 0.119 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.484 6.484 12 C -0.018 4.018 13 N -0.357 5.357 14 C 0.335 3.665 15 O -0.433 6.433 16 C -0.210 4.210 17 C -0.072 4.072 18 C -0.142 4.142 19 C -0.180 4.180 20 C -0.144 4.144 21 H 0.085 0.915 22 H 0.230 0.770 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.249 0.751 26 H 0.151 0.849 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.270 -17.147 0.122 17.297 hybrid contribution 0.313 1.093 0.013 1.137 sum 2.583 -16.054 0.134 16.261 Atomic orbital electron populations 1.69605 1.06016 1.28637 1.49287 1.25326 0.95663 0.99927 0.96776 0.85868 0.78774 0.80140 0.79159 1.19768 1.20851 1.19773 1.19689 0.93449 0.82039 1.48366 0.87725 1.41790 1.09477 1.04465 1.62657 1.19765 0.88301 0.85024 0.85539 1.90493 1.13730 1.86849 1.57350 1.20935 0.91912 0.85769 1.03192 1.45616 1.11543 1.04589 1.73942 1.18381 0.88429 0.82887 0.76831 1.90748 1.16511 1.85083 1.50964 1.21625 0.99539 0.90993 1.08851 1.23391 0.99003 0.93185 0.91668 1.22197 0.95441 0.94653 1.01870 1.22729 0.96561 0.98358 1.00385 1.22330 0.98247 0.92122 1.01749 0.91531 0.77024 0.89872 0.89879 0.75085 0.84913 0.89499 0.88579 0.90554 0.89796 0.88271 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.31 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.78 5.29 -10.96 -0.06 -13.84 16 10 C 0.43 9.98 7.85 -10.99 -0.09 9.89 16 11 O -0.60 -15.49 15.24 5.54 0.08 -15.41 16 12 C 0.11 2.08 6.15 -5.19 -0.03 2.05 16 13 N -0.70 -12.21 5.52 -62.67 -0.35 -12.55 16 14 C 0.55 9.09 7.76 -12.66 -0.10 8.99 16 15 O -0.55 -10.61 15.15 5.26 0.08 -10.53 16 16 C -0.19 -2.46 10.03 -37.81 -0.38 -2.84 16 17 C -0.07 -0.82 6.93 -100.48 -0.70 -1.51 16 18 C -0.10 -1.15 6.99 -27.55 -0.19 -1.34 16 19 C -0.14 -1.16 8.17 -26.20 -0.21 -1.37 16 20 C -0.11 -0.88 7.95 -27.41 -0.22 -1.09 16 21 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 22 H 0.40 9.55 7.90 -40.82 -0.32 9.23 16 23 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 24 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 25 H 0.41 6.94 7.42 -40.82 -0.30 6.64 16 26 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.09 1.12 7.49 -51.93 -0.39 0.73 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 285.47 15.07 4.30 4.30 Total: -1.00 -31.20 285.47 -6.30 -37.50 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -3.91 Total: 13.42 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.16 Total: 4.83 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.32 Total: -49.73 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: 0.16 Total: -25.94 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.20 -6.30 -37.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.983 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds