Wall clock time and date at job start Sun Mar 29 2020 21:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 119.99633 * 2 1 4 4 H 1.48500 * 109.47001 * 239.99981 * 3 2 1 5 5 H 1.48496 * 109.47164 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46855 * 120.00293 * 3 2 1 7 7 C 1.38950 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99755 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99728 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00221 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99830 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47148 * 179.97438 * 12 10 9 14 14 C 1.34773 * 119.99969 * 179.72251 * 13 12 10 15 15 O 1.21617 * 120.00330 * 0.02562 * 14 13 12 16 16 C 1.47106 * 120.00040 * 180.02562 * 14 13 12 17 17 C 1.32986 * 120.00138 * 180.02562 * 16 14 13 18 18 C 1.51407 * 136.31548 * 359.62331 * 17 16 14 19 19 C 1.53385 * 87.51751 * 206.06276 * 18 17 16 20 20 C 1.51413 * 136.31796 * 180.02562 * 17 16 14 21 21 H 0.96994 * 120.00439 * 359.97438 * 1 2 3 22 22 H 0.96998 * 120.00112 * 359.97438 * 9 7 2 23 23 H 1.09001 * 109.47545 * 60.00214 * 12 10 9 24 24 H 1.08998 * 109.47669 * 300.00156 * 12 10 9 25 25 H 0.97005 * 119.99811 * 0.02562 * 13 12 10 26 26 H 1.07998 * 119.99541 * 0.02562 * 16 14 13 27 27 H 1.08993 * 113.56307 * 320.64490 * 18 17 16 28 28 H 1.08998 * 113.55925 * 91.38375 * 18 17 16 29 29 H 1.09004 * 113.96422 * 220.29494 * 19 18 17 30 30 H 1.08996 * 113.59956 * 88.79878 * 19 18 17 31 31 H 1.09001 * 113.55355 * 268.61999 * 20 17 16 32 32 H 1.08995 * 113.55880 * 39.35111 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1960 -5.9764 -0.0027 14 6 1.7467 -7.2471 0.0024 15 8 0.5511 -7.4694 0.0069 16 6 2.7027 -8.3652 0.0025 17 6 2.2594 -9.6190 0.0070 18 6 0.9086 -10.3027 0.0195 19 6 1.5956 -11.5007 0.6870 20 6 2.8804 -10.9999 0.0092 21 1 -0.4850 0.8400 0.0004 22 1 0.3534 -2.3906 -0.0016 23 1 0.6176 -4.9205 -0.8924 24 1 0.6169 -4.9209 0.8875 25 1 3.1497 -5.7991 -0.0022 26 1 3.7644 -8.1678 -0.0011 27 1 0.1768 -9.8100 0.6596 28 1 0.5217 -10.5214 -0.9757 29 1 1.2527 -12.4684 0.3206 30 1 1.6194 -11.4396 1.7750 31 1 3.0346 -11.4098 -0.9890 32 1 3.7652 -11.0787 0.6407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804821078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:59 Heat of formation + Delta-G solvation = -61.713061 kcal Electronic energy + Delta-G solvation = -15881.733078 eV Core-core repulsion = 13035.314125 eV Total energy + Delta-G solvation = -2846.418953 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.05091 -40.08560 -39.08862 -36.25039 -35.24815 -33.40030 -32.04026 -29.19486 -26.67668 -26.49758 -24.06038 -21.70929 -21.40359 -20.14900 -19.33190 -18.24534 -17.22663 -17.09480 -16.74847 -16.36713 -16.26672 -15.83064 -15.35122 -15.22104 -14.95723 -13.96769 -13.62212 -13.54995 -13.30544 -12.92521 -12.89442 -12.62033 -12.48394 -12.13992 -11.89032 -11.57595 -11.49629 -10.76201 -10.57983 -10.35757 -10.12370 -9.96890 -8.52156 -6.02870 0.37420 1.37424 1.42138 1.53350 1.88450 2.05641 2.29144 2.32326 3.10662 3.14796 3.42080 3.60262 3.85014 4.12690 4.25063 4.29321 4.41059 4.42710 4.62944 4.77088 4.86850 4.96083 5.06955 5.26698 5.29325 5.37182 5.38694 5.66923 5.90243 6.45398 6.58126 7.01677 7.19814 7.42482 7.92421 8.64620 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.083453 B = 0.003747 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.439426 B = 7471.767446 C = 7758.054659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.340 4.340 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.432 3.568 11 O -0.624 6.624 12 C 0.122 3.878 13 N -0.706 5.706 14 C 0.544 3.456 15 O -0.585 6.585 16 C -0.213 4.213 17 C -0.068 4.068 18 C -0.120 4.120 19 C -0.132 4.132 20 C -0.095 4.095 21 H 0.280 0.720 22 H 0.399 0.601 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.414 0.586 26 H 0.156 0.844 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.203 -18.469 0.025 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.219 3.781 11 O -0.512 6.512 12 C -0.006 4.006 13 N -0.359 5.359 14 C 0.335 3.665 15 O -0.467 6.467 16 C -0.233 4.233 17 C -0.070 4.070 18 C -0.156 4.156 19 C -0.169 4.169 20 C -0.131 4.131 21 H 0.090 0.910 22 H 0.233 0.767 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.252 0.748 26 H 0.174 0.826 27 H 0.078 0.922 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.006 -18.417 0.030 18.661 hybrid contribution 0.028 1.369 0.042 1.370 sum 3.034 -17.048 0.072 17.316 Atomic orbital electron populations 1.69674 1.07056 1.29772 1.49150 1.26154 0.96544 1.02737 0.95661 0.84912 0.77719 0.76112 0.79151 1.19419 1.19562 1.19437 1.19728 0.93020 0.83563 1.50612 0.89519 1.41841 1.09579 1.04611 1.63373 1.20415 0.88132 0.85915 0.83623 1.90467 1.15142 1.87541 1.58052 1.20746 0.91766 0.84030 1.04022 1.45640 1.11295 1.04536 1.74427 1.19013 0.88713 0.83185 0.75610 1.90728 1.18036 1.85415 1.52562 1.21591 0.99825 0.90157 1.11745 1.23962 1.00306 0.94230 0.88462 1.22367 0.94892 0.96204 1.02182 1.22718 0.95733 0.98101 1.00334 1.22413 0.98656 0.88864 1.03206 0.91007 0.76713 0.88958 0.89018 0.74789 0.82646 0.92176 0.87879 0.88266 0.89717 0.86150 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.15 13.05 21.66 0.28 -48.86 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 3 Si 1.00 41.95 29.55 68.60 2.03 43.98 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.34 -18.95 9.68 84.04 0.81 -18.14 16 8 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 9 N -0.56 -28.57 5.29 -306.98 -1.62 -30.20 16 10 C 0.43 20.44 7.85 87.66 0.69 21.13 16 11 O -0.62 -32.84 15.24 -3.08 -0.05 -32.89 16 12 C 0.12 4.66 6.15 85.63 0.53 5.19 16 13 N -0.71 -24.47 5.52 -470.44 -2.60 -27.07 16 14 C 0.54 18.05 7.76 86.57 0.67 18.72 16 15 O -0.58 -22.68 15.15 -4.09 -0.06 -22.74 16 16 C -0.21 -5.30 10.03 23.43 0.23 -5.06 16 17 C -0.07 -1.45 6.93 -17.17 -0.12 -1.56 16 18 C -0.12 -2.47 6.99 30.06 0.21 -2.26 16 19 C -0.13 -1.75 8.17 30.94 0.25 -1.50 16 20 C -0.09 -1.21 7.95 30.16 0.24 -0.97 16 21 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 22 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 23 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 24 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 25 H 0.41 13.98 7.42 -92.70 -0.69 13.29 16 26 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 27 H 0.06 1.57 7.49 -2.39 -0.02 1.55 16 28 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -67.17 285.47 1.70 -65.47 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -0.27 Total: 36.84 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 3.99 Total: 15.46 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -3.94 Total: -106.13 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -0.11 Total: -55.63 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -67.17 1.70 -65.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.757 kcal (2) G-P(sol) polarization free energy of solvation -67.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds