Wall clock time and date at job start Sun Mar 29 2020 22:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 3 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 3 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 O 1.45202 * 109.47203 * 294.99546 * 3 2 1 14 14 C 1.34755 * 116.99256 * 90.00448 * 13 3 2 15 15 O 1.21518 * 120.00839 * 359.97438 * 14 13 3 16 16 C 1.47296 * 119.99494 * 179.97438 * 14 13 3 17 17 C 1.38121 * 126.42413 * 359.68629 * 16 14 13 18 18 N 1.34229 * 107.40403 * 179.83384 * 17 16 14 19 19 H 0.97001 * 125.74116 * 180.15964 * 18 17 16 20 20 N 1.39924 * 108.51325 * 0.43318 * 18 17 16 21 21 C 1.30423 * 108.91889 * 359.72364 * 20 18 17 22 22 C 1.50703 * 125.99568 * 180.02562 * 21 20 18 23 23 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 24 24 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 26 26 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 27 27 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 28 28 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 29 29 H 1.08001 * 126.30290 * 0.02562 * 17 16 14 30 30 H 1.08999 * 109.46961 * 269.97974 * 22 21 20 31 31 H 1.09003 * 109.46607 * 29.97556 * 22 21 20 32 32 H 1.08998 * 109.47186 * 149.97556 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 5.4535 0.8896 1.3415 9 14 3.0960 0.1144 2.5731 10 1 2.8802 -1.3232 2.2702 11 1 3.7905 0.2462 3.8792 12 1 1.7851 0.8090 2.6374 13 8 1.6560 2.0916 -1.2408 14 6 0.4682 2.7279 -1.2560 15 8 -0.2278 2.7396 -0.2599 16 6 0.0136 3.4093 -2.4801 17 6 0.6962 3.4847 -3.6785 18 7 -0.0655 4.1883 -4.5309 19 1 0.1598 4.3991 -5.4505 20 7 -1.2364 4.5718 -3.8676 21 6 -1.2003 4.1139 -2.6470 22 6 -2.2661 4.3025 -1.5983 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 5.8763 0.4948 2.1200 29 1 1.6633 3.0539 -3.8917 30 1 -2.0638 5.2130 -1.0343 31 1 -3.2402 4.3828 -2.0809 32 1 -2.2652 3.4480 -0.9216 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805928113.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:10 Heat of formation + Delta-G solvation = -41.924009 kcal Electronic energy + Delta-G solvation = -17110.125062 eV Core-core repulsion = 14264.564226 eV Total energy + Delta-G solvation = -2845.560836 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.45916 -40.92185 -37.57200 -35.44814 -34.00758 -33.88962 -31.57633 -29.68491 -28.96898 -25.31421 -24.32128 -22.68466 -21.48516 -20.75021 -19.52162 -18.66777 -18.21581 -17.36047 -16.93984 -16.13402 -15.85444 -15.34247 -15.14844 -14.74223 -14.03070 -13.99618 -13.80572 -13.73646 -13.51338 -13.11394 -13.07358 -12.97662 -12.53646 -12.08986 -11.97917 -11.49037 -11.45217 -11.16834 -11.04865 -10.68408 -10.56039 -9.95668 -8.41331 -6.48852 0.40071 0.97235 1.26055 1.34123 1.43807 1.67607 2.17258 2.22945 2.24334 2.91607 3.45116 3.75652 4.10887 4.18027 4.20536 4.24324 4.43861 4.54335 4.66947 4.77031 4.88266 4.95929 4.98650 5.02753 5.10929 5.35636 5.40870 5.45348 5.75971 6.19465 6.23101 6.46365 6.55251 7.04630 7.18534 8.74330 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037436 B = 0.007003 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.754680 B = 3997.124170 C = 4378.978774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.145 4.145 3 C 0.204 3.796 4 H 0.030 0.970 5 C -0.536 4.536 6 H 0.049 0.951 7 C 0.031 3.969 8 N -0.931 5.931 9 Si 0.935 3.065 10 H -0.252 1.252 11 H -0.286 1.286 12 H -0.254 1.254 13 O -0.350 6.350 14 C 0.529 3.471 15 O -0.540 6.540 16 C -0.312 4.312 17 C 0.158 3.842 18 N -0.442 5.442 19 H 0.464 0.536 20 N -0.316 5.316 21 C 0.130 3.870 22 C -0.078 4.078 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.274 0.726 29 H 0.223 0.777 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.600 3.173 -9.862 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.183 4.183 3 C 0.149 3.851 4 H 0.047 0.953 5 C -0.574 4.574 6 H 0.067 0.933 7 C -0.168 4.168 8 N -0.569 5.569 9 Si 0.760 3.240 10 H -0.177 1.177 11 H -0.213 1.213 12 H -0.178 1.178 13 O -0.266 6.266 14 C 0.375 3.625 15 O -0.432 6.432 16 C -0.325 4.325 17 C 0.003 3.997 18 N -0.148 5.148 19 H 0.313 0.687 20 N -0.139 5.139 21 C -0.038 4.038 22 C -0.137 4.137 23 H 0.066 0.934 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.240 0.760 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.298 3.778 -10.324 17.254 hybrid contribution 0.909 -0.676 0.941 1.473 sum -12.389 3.102 -9.384 15.848 Atomic orbital electron populations 1.21797 0.94579 1.01794 1.01520 1.22257 0.96463 0.97532 1.02037 1.20609 0.93768 0.89671 0.81039 0.95269 1.20997 0.89758 1.39643 1.06982 0.93253 1.25522 0.96013 0.95683 0.99625 1.69954 1.10334 1.45766 1.30873 0.86055 0.79473 0.80304 0.78179 1.17694 1.21277 1.17848 1.86509 1.35754 1.63421 1.40960 1.20432 0.79228 0.75405 0.87387 1.90714 1.55864 1.60534 1.36108 1.19586 1.00814 1.17277 0.94807 1.23743 0.97301 0.90412 0.88229 1.46108 1.13633 1.40613 1.14410 0.68666 1.77084 1.04988 1.25013 1.06845 1.22730 0.94710 0.92832 0.93488 1.20393 0.94719 1.04080 0.94494 0.93428 0.90959 0.93366 0.90797 0.92455 0.91666 0.76042 0.89519 0.88864 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 8.56 71.98 0.62 -4.58 16 2 C -0.15 -6.33 5.15 30.59 0.16 -6.17 16 3 C 0.20 10.12 1.84 29.85 0.05 10.18 16 4 H 0.03 1.56 6.21 -2.39 -0.01 1.55 16 5 C -0.54 -30.99 9.48 25.60 0.24 -30.74 16 6 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 7 C 0.03 1.79 5.45 84.66 0.46 2.25 16 8 N -0.93 -56.54 13.96 21.45 0.30 -56.24 16 9 Si 0.93 43.99 24.41 68.60 1.67 45.66 16 10 H -0.25 -10.94 6.84 99.48 0.68 -10.26 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.25 -11.70 6.52 99.48 0.65 -11.05 16 13 O -0.35 -15.66 9.63 -56.66 -0.55 -16.21 16 14 C 0.53 21.09 6.40 70.20 0.45 21.54 16 15 O -0.54 -23.19 12.10 19.78 0.24 -22.95 16 16 C -0.31 -9.81 6.13 -20.16 -0.12 -9.93 16 17 C 0.16 3.59 11.86 84.30 1.00 4.59 16 18 N -0.44 -8.26 7.28 -56.29 -0.41 -8.67 16 19 H 0.46 4.50 8.96 -213.43 -1.91 2.58 16 20 N -0.32 -8.02 12.63 -46.65 -0.59 -8.60 16 21 C 0.13 3.71 7.27 43.53 0.32 4.03 16 22 C -0.08 -1.95 9.92 71.24 0.71 -1.24 16 23 H 0.05 1.75 6.06 -2.39 -0.01 1.74 16 24 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.05 1.87 7.79 -2.39 -0.02 1.85 16 26 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.06 2.55 3.24 -2.39 -0.01 2.54 16 28 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.22 3.81 8.06 -2.91 -0.02 3.78 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 2.29 6.56 -2.39 -0.02 2.27 16 Total: -1.00 -71.43 268.34 3.71 -67.72 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -0.84 Total: 9.38 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 3.88 Total: -10.08 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -0.70 Total: -73.52 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.31 Total: -39.16 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.67 Total: 45.66 kcal Total: -71.43 3.71 -67.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805928113.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.796 kcal (2) G-P(sol) polarization free energy of solvation -71.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds