Wall clock time and date at job start Sun Mar 29 2020 22:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30838 * 125.89938 * 2 1 4 4 N 1.40084 * 108.20943 * 179.97438 * 3 2 1 5 5 C 1.46497 * 126.03658 * 180.02562 * 4 3 2 6 6 C 1.34951 * 107.92158 * 359.75684 * 4 3 2 7 7 C 1.50704 * 126.12351 * 180.24078 * 6 4 3 8 8 C 1.35315 * 107.74532 * 0.38993 * 6 4 3 9 9 C 1.50703 * 126.03723 * 179.87398 * 8 6 4 10 10 C 1.50701 * 109.47064 * 269.71320 * 9 8 6 11 11 O 1.21208 * 119.99902 * 0.02562 * 10 9 8 12 12 O 1.34308 * 119.99862 * 179.97438 * 10 9 8 13 13 C 1.34922 * 117.00061 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99785 * 0.02562 * 13 12 10 15 15 C 1.38750 * 120.00381 * 179.97438 * 13 12 10 16 16 N 1.31444 * 120.00190 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99585 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46973 * 90.00043 * 17 15 13 19 19 H 1.48505 * 109.47036 * 209.99154 * 17 15 13 20 20 H 1.48493 * 109.47388 * 329.99648 * 17 15 13 21 21 H 1.08994 * 109.47461 * 270.02496 * 1 2 3 22 22 H 1.08999 * 109.47336 * 30.03094 * 1 2 3 23 23 H 1.08999 * 109.46640 * 150.02648 * 1 2 3 24 24 H 1.09001 * 109.46948 * 89.97939 * 5 4 3 25 25 H 1.09004 * 109.46927 * 209.97187 * 5 4 3 26 26 H 1.08999 * 109.47380 * 329.96816 * 5 4 3 27 27 H 1.08999 * 109.46731 * 270.17645 * 7 6 4 28 28 H 1.08995 * 109.47145 * 30.17522 * 7 6 4 29 29 H 1.09001 * 109.46833 * 150.17513 * 7 6 4 30 30 H 1.09002 * 109.47152 * 149.71413 * 9 8 6 31 31 H 1.09001 * 109.46980 * 29.71513 * 9 8 6 32 32 H 0.97002 * 119.99630 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7898 1.5009 0.0013 6 6 3.6142 -0.7153 0.0064 7 6 4.8351 -1.5988 0.0142 8 6 2.3271 -1.1330 0.0006 9 6 1.8600 -2.5657 0.0013 10 6 1.7049 -3.0442 -1.4193 11 8 1.9499 -2.2961 -2.3409 12 8 1.2961 -4.3000 -1.6641 13 6 1.1775 -4.6643 -2.9577 14 1 1.4081 -3.9575 -3.7411 15 6 0.7605 -5.9474 -3.2817 16 7 0.6455 -6.3025 -4.5421 17 14 0.3624 -7.1701 -1.9267 18 1 -1.0745 -7.0612 -1.5682 19 1 0.6508 -8.5471 -2.4022 20 1 1.1944 -6.8742 -0.7329 21 1 -0.3634 0.0004 1.0276 22 1 -0.3634 0.8897 -0.5143 23 1 -0.3632 -0.8902 -0.5134 24 1 5.0820 1.7160 1.0292 25 1 5.6097 0.9982 -0.5118 26 1 4.5567 2.4333 -0.5130 27 1 5.1346 -1.8136 -1.0116 28 1 5.6485 -1.0899 0.5312 29 1 4.6050 -2.5318 0.5286 30 1 0.9009 -2.6350 0.5148 31 1 2.5932 -3.1867 0.5159 32 1 0.3535 -7.1994 -4.7685 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809444777.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:49 Heat of formation + Delta-G solvation = -35.247833 kcal Electronic energy + Delta-G solvation = -16858.926280 eV Core-core repulsion = 14013.654945 eV Total energy + Delta-G solvation = -2845.271335 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.40167 -40.90930 -37.36363 -35.23062 -34.45125 -33.96391 -30.86616 -30.27616 -27.90255 -26.93726 -25.62921 -22.17631 -20.54769 -20.33267 -20.02396 -18.52043 -17.38538 -16.87391 -16.72750 -16.38437 -15.71934 -14.98058 -14.81505 -14.49223 -14.31900 -14.06207 -13.97359 -13.83192 -13.53986 -13.30136 -13.00545 -12.81758 -12.78205 -12.61811 -12.27971 -12.19710 -11.80981 -11.46512 -11.02991 -10.78218 -9.97573 -9.27237 -8.49420 -6.35953 0.85796 1.37148 1.38250 1.55237 1.62726 1.66729 1.67794 2.32885 2.78251 2.96855 3.52894 3.71760 4.06522 4.12976 4.30068 4.34489 4.40229 4.54106 4.56001 4.63550 4.71703 4.75252 4.78386 4.97284 5.03515 5.11019 5.26194 5.55271 5.72623 5.96649 6.16339 6.64380 6.74255 6.89705 7.70545 8.64083 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.037299 B = 0.006211 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.508387 B = 4506.947637 C = 4710.198199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.076 3.924 3 N -0.335 5.335 4 N -0.380 5.380 5 C 0.093 3.907 6 C 0.099 3.901 7 C -0.093 4.093 8 C -0.250 4.250 9 C -0.013 4.013 10 C 0.413 3.587 11 O -0.573 6.573 12 O -0.261 6.261 13 C -0.405 4.405 14 H 0.051 0.949 15 C 0.012 3.988 16 N -0.924 5.924 17 Si 0.986 3.014 18 H -0.260 1.260 19 H -0.269 1.269 20 H -0.244 1.244 21 H 0.105 0.895 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.905 8.857 15.935 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 N -0.158 5.158 4 N -0.162 5.162 5 C -0.046 4.046 6 C -0.030 4.030 7 C -0.151 4.151 8 C -0.261 4.261 9 C -0.051 4.051 10 C 0.260 3.740 11 O -0.468 6.468 12 O -0.171 6.171 13 C -0.481 4.481 14 H 0.069 0.931 15 C -0.187 4.187 16 N -0.564 5.564 17 Si 0.805 3.195 18 H -0.185 1.185 19 H -0.194 1.194 20 H -0.167 1.167 21 H 0.123 0.877 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.114 0.886 25 H 0.124 0.876 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.114 10.306 15.531 19.951 hybrid contribution -0.223 -0.987 -0.736 1.252 sum 6.891 9.318 14.795 18.794 Atomic orbital electron populations 1.20250 0.85569 1.03095 1.04211 1.22570 0.97992 0.90325 0.98084 1.77145 0.87462 1.23086 1.28091 1.48587 1.05814 1.04568 1.57274 1.22167 0.82972 0.94636 1.04874 1.21319 0.97604 0.85139 0.98936 1.20618 0.92333 0.98526 1.03637 1.19300 0.92441 0.94774 1.19609 1.19475 1.05916 0.91744 0.87953 1.24592 0.75795 0.79812 0.93808 1.90580 1.50641 1.56674 1.48872 1.83546 1.73802 1.30737 1.28979 1.20264 1.48462 0.99359 0.80017 0.93141 1.25618 0.94689 0.98483 0.99883 1.69728 1.45959 1.21773 1.18983 0.85042 0.79922 0.76232 0.78303 1.18487 1.19357 1.16716 0.87706 0.90874 0.91441 0.88588 0.87561 0.89271 0.91025 0.87762 0.88325 0.85579 0.85251 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.04 10.12 71.23 0.72 -1.32 16 2 C 0.08 2.59 7.22 43.10 0.31 2.91 16 3 N -0.33 -11.54 12.58 -47.39 -0.60 -12.14 16 4 N -0.38 -11.01 4.01 -356.03 -1.43 -12.44 16 5 C 0.09 1.61 11.09 127.77 1.42 3.02 16 6 C 0.10 2.93 6.93 41.41 0.29 3.22 16 7 C -0.09 -1.98 9.68 71.24 0.69 -1.29 16 8 C -0.25 -8.47 4.59 -20.14 -0.09 -8.56 16 9 C -0.01 -0.41 5.76 29.10 0.17 -0.25 16 10 C 0.41 19.74 7.90 71.24 0.56 20.30 16 11 O -0.57 -32.46 15.27 20.78 0.32 -32.14 16 12 O -0.26 -13.90 8.58 14.88 0.13 -13.77 16 13 C -0.40 -25.28 10.10 67.94 0.69 -24.59 16 14 H 0.05 3.63 7.09 -2.91 -0.02 3.61 16 15 C 0.01 0.71 5.49 84.87 0.47 1.18 16 16 N -0.92 -56.78 13.96 21.62 0.30 -56.48 16 17 Si 0.99 43.45 28.62 68.60 1.96 45.41 16 18 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.24 -10.07 7.11 99.48 0.71 -9.36 16 21 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 22 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.07 2.03 7.92 -2.39 -0.02 2.02 16 24 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.11 1.35 7.67 -2.38 -0.02 1.34 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.10 1.42 7.74 -2.39 -0.02 1.40 16 29 H 0.10 1.86 7.14 -2.39 -0.02 1.84 16 30 H 0.13 3.46 7.92 -2.39 -0.02 3.44 16 31 H 0.13 3.37 7.14 -2.39 -0.02 3.35 16 32 H 0.29 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -83.20 284.84 7.03 -76.17 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.12 Total: 10.76 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 5.22 Total: -5.38 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -1.72 Total: -81.05 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: 0.44 Total: -45.91 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.96 Total: 45.41 kcal Total: -83.20 7.03 -76.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809444777.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.927 kcal (2) G-P(sol) polarization free energy of solvation -83.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds