Wall clock time and date at job start Sun Mar 29 2020 22:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48492 * 109.47543 * 270.00070 * 3 2 1 5 5 H 1.48496 * 109.47244 * 30.00969 * 3 2 1 6 6 H 1.48509 * 109.46489 * 150.00439 * 3 2 1 7 7 C 1.37875 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00045 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99958 * 359.97438 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47070 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.47214 * 180.02562 * 15 14 13 17 17 C 1.36887 * 126.39674 * 90.00200 * 16 15 14 18 18 C 1.34672 * 106.81471 * 180.02562 * 17 16 15 19 19 N 1.34126 * 108.02288 * 359.97438 * 18 17 16 20 20 C 1.30499 * 109.25571 * 359.72590 * 19 18 17 21 21 H 0.97000 * 120.00297 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46932 * 60.00111 * 9 7 2 23 23 H 1.09005 * 109.47238 * 300.00488 * 9 7 2 24 24 H 1.09004 * 109.47330 * 60.00023 * 10 9 7 25 25 H 1.08997 * 109.47279 * 300.00509 * 10 9 7 26 26 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 27 27 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 28 28 H 1.08998 * 109.47592 * 300.00297 * 15 14 13 29 29 H 1.08999 * 109.47084 * 60.00195 * 15 14 13 30 30 H 1.08000 * 126.58913 * 359.96539 * 17 16 15 31 31 H 1.08003 * 125.98811 * 180.02562 * 18 17 16 32 32 H 1.08005 * 125.65278 * 180.28676 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2835 -4.9671 0.0010 13 8 2.1629 -6.1296 0.0007 14 6 1.3721 -7.3473 0.0019 15 6 2.3041 -8.5607 0.0018 16 7 1.5062 -9.7893 0.0024 17 6 1.0635 -10.4708 -1.0991 18 6 0.3721 -11.5345 -0.6473 19 7 0.3926 -11.5037 0.6935 20 6 1.0754 -10.4646 1.0897 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8719 -3.6043 0.8895 25 1 2.8719 -3.6043 -0.8904 26 1 0.7436 -7.3716 0.8921 27 1 0.7430 -7.3728 -0.8878 28 1 2.9324 -8.5363 -0.8885 29 1 2.9335 -8.5354 0.8914 30 1 1.2348 -10.2057 -2.1320 31 1 -0.1130 -12.2819 -1.2576 32 1 1.2622 -10.1885 2.1170 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616740.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:41 Heat of formation + Delta-G solvation = -34.889761 kcal Electronic energy + Delta-G solvation = -15782.824918 eV Core-core repulsion = 12937.569110 eV Total energy + Delta-G solvation = -2845.255808 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.26555 -40.13040 -36.63810 -34.61674 -33.66966 -31.29408 -29.96147 -29.31868 -26.16212 -23.99620 -22.14396 -21.57804 -21.11086 -19.99911 -17.87061 -17.11741 -16.60943 -16.56760 -15.83087 -14.92195 -14.87345 -14.51426 -14.16582 -14.07702 -13.45410 -13.16813 -12.93181 -12.31373 -12.15695 -11.99245 -11.29957 -11.01406 -10.70142 -10.61005 -10.24429 -10.13916 -10.10261 -9.94638 -9.64262 -9.25226 -8.76460 -8.43897 -6.07456 -4.12999 1.74781 2.22797 2.65137 2.96346 3.17047 3.27542 3.34253 3.36824 4.24964 4.37733 4.44234 4.50230 4.64945 4.85813 5.08060 5.18650 5.23635 5.28071 5.47100 5.53218 5.99227 6.00512 6.07041 6.45888 6.49102 6.76675 6.89648 7.58774 7.64274 7.83388 7.90720 8.11015 8.28984 8.93954 9.51572 11.03489 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.083953 B = 0.003401 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.441480 B = 8231.541864 C = 8363.920910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.101 4.101 11 C 0.458 3.542 12 O -0.500 6.500 13 O -0.365 6.365 14 C 0.050 3.950 15 C 0.108 3.892 16 N -0.457 5.457 17 C -0.055 4.055 18 C -0.031 4.031 19 N -0.496 5.496 20 C 0.185 3.815 21 H 0.263 0.737 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.175 0.825 31 H 0.170 0.830 32 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 -17.909 -1.002 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.139 4.139 11 C 0.302 3.698 12 O -0.386 6.386 13 O -0.282 6.282 14 C -0.026 4.026 15 C -0.015 4.015 16 N -0.142 5.142 17 C -0.187 4.187 18 C -0.178 4.178 19 N -0.214 5.214 20 C -0.098 4.098 21 H 0.072 0.928 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.193 0.807 31 H 0.187 0.813 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.318 -18.253 -0.487 19.018 hybrid contribution 0.593 1.482 -0.590 1.702 sum 5.911 -16.771 -1.077 17.814 Atomic orbital electron populations 1.69988 1.06120 1.26871 1.49723 1.25027 0.94868 0.99398 0.95032 0.86526 0.79752 0.83149 0.78161 1.20573 1.21145 1.19764 1.21132 0.93071 0.90567 1.52079 0.92258 1.19037 0.93228 0.89276 0.98958 1.21800 1.00712 0.87204 1.04165 1.24894 0.88035 0.85289 0.71609 1.90664 1.15889 1.87398 1.44640 1.86499 1.41841 1.14634 1.85268 1.23090 0.93529 0.82248 1.03737 1.21630 0.92742 0.80605 1.06515 1.45445 1.41007 1.20384 1.07344 1.22829 1.05713 0.97268 0.92882 1.22334 1.04276 0.99932 0.91255 1.70312 1.19075 1.19787 1.12206 1.25116 0.99379 0.91496 0.93779 0.92769 0.95569 0.95548 0.88751 0.88773 0.90719 0.90809 0.87707 0.87440 0.80738 0.81270 0.77748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.82 4.26 -27.89 -0.12 0.71 16 10 C -0.10 -1.95 5.75 -27.89 -0.16 -2.11 16 11 C 0.46 8.45 7.96 36.01 0.29 8.74 16 12 O -0.50 -11.00 15.73 -18.75 -0.29 -11.30 16 13 O -0.36 -5.24 10.22 -39.27 -0.40 -5.65 16 14 C 0.05 0.58 5.79 37.16 0.22 0.79 16 15 C 0.11 0.86 6.53 -4.04 -0.03 0.83 16 16 N -0.46 -4.27 2.75 -118.58 -0.33 -4.60 16 17 C -0.05 -0.51 11.58 -16.56 -0.19 -0.70 16 18 C -0.03 -0.32 11.87 -17.81 -0.21 -0.54 16 19 N -0.50 -6.18 11.25 -14.66 -0.16 -6.35 16 20 C 0.18 1.87 12.56 -90.37 -1.14 0.74 16 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 23 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 24 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 25 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 26 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 27 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.21 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 290.23 15.07 4.37 4.37 Total: -1.00 -33.82 290.23 -7.04 -40.85 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.19 Total: -2.74 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.75 Total: -4.76 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.25 Total: -36.82 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.70 Total: -16.94 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.82 -7.04 -40.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616740.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.965 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds