Wall clock time and date at job start Sun Mar 29 2020 22:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48492 * 109.47543 * 270.00070 * 3 2 1 5 5 H 1.48496 * 109.47244 * 30.00969 * 3 2 1 6 6 H 1.48509 * 109.46489 * 150.00439 * 3 2 1 7 7 C 1.37875 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00045 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99958 * 359.97438 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47070 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.47214 * 180.02562 * 15 14 13 17 17 C 1.36887 * 126.39674 * 90.00200 * 16 15 14 18 18 C 1.34672 * 106.81471 * 180.02562 * 17 16 15 19 19 N 1.34126 * 108.02288 * 359.97438 * 18 17 16 20 20 C 1.30499 * 109.25571 * 359.72590 * 19 18 17 21 21 H 0.97000 * 120.00297 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46932 * 60.00111 * 9 7 2 23 23 H 1.09005 * 109.47238 * 300.00488 * 9 7 2 24 24 H 1.09004 * 109.47330 * 60.00023 * 10 9 7 25 25 H 1.08997 * 109.47279 * 300.00509 * 10 9 7 26 26 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 27 27 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 28 28 H 1.08998 * 109.47592 * 300.00297 * 15 14 13 29 29 H 1.08999 * 109.47084 * 60.00195 * 15 14 13 30 30 H 1.08000 * 126.58913 * 359.96539 * 17 16 15 31 31 H 1.08003 * 125.98811 * 180.02562 * 18 17 16 32 32 H 1.08005 * 125.65278 * 180.28676 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2835 -4.9671 0.0010 13 8 2.1629 -6.1296 0.0007 14 6 1.3721 -7.3473 0.0019 15 6 2.3041 -8.5607 0.0018 16 7 1.5062 -9.7893 0.0024 17 6 1.0635 -10.4708 -1.0991 18 6 0.3721 -11.5345 -0.6473 19 7 0.3926 -11.5037 0.6935 20 6 1.0754 -10.4646 1.0897 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.8719 -3.6043 0.8895 25 1 2.8719 -3.6043 -0.8904 26 1 0.7436 -7.3716 0.8921 27 1 0.7430 -7.3728 -0.8878 28 1 2.9324 -8.5363 -0.8885 29 1 2.9335 -8.5354 0.8914 30 1 1.2348 -10.2057 -2.1320 31 1 -0.1130 -12.2819 -1.2576 32 1 1.2622 -10.1885 2.1170 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616740.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:41 Heat of formation + Delta-G solvation = -54.827570 kcal Electronic energy + Delta-G solvation = -15783.689486 eV Core-core repulsion = 12937.569110 eV Total energy + Delta-G solvation = -2846.120376 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.00131 -41.53866 -37.96627 -35.66359 -35.46955 -33.17622 -30.82494 -30.15444 -27.99371 -25.12657 -23.78040 -22.32303 -21.86310 -21.51442 -19.21584 -18.38726 -17.96379 -17.83673 -17.24373 -16.48310 -15.95834 -15.90381 -15.11320 -14.85854 -14.50431 -14.34777 -14.23887 -14.09050 -13.41867 -13.09216 -13.00663 -12.82348 -12.50913 -12.01373 -11.77331 -11.74253 -11.51842 -11.30119 -11.00565 -10.71813 -10.58328 -9.49795 -8.20602 -6.34442 0.95568 1.17775 1.35044 1.44674 1.45919 1.57124 2.14539 2.19486 2.43614 3.13654 3.57032 3.57211 3.85929 3.88438 4.04320 4.14007 4.22047 4.42064 4.45867 4.58209 4.60060 4.76093 4.91555 5.27075 5.27587 5.46826 5.54242 5.77973 5.80098 6.12006 6.19657 6.72674 6.85086 7.08933 7.36279 8.91996 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.083953 B = 0.003401 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.441480 B = 8231.541864 C = 8363.920910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.254 1.254 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.036 3.964 10 C -0.092 4.092 11 C 0.468 3.532 12 O -0.545 6.545 13 O -0.346 6.346 14 C 0.047 3.953 15 C 0.120 3.880 16 N -0.459 5.459 17 C -0.052 4.052 18 C -0.056 4.056 19 N -0.537 5.537 20 C 0.178 3.822 21 H 0.263 0.737 22 H -0.011 1.011 23 H -0.011 1.011 24 H 0.121 0.879 25 H 0.120 0.880 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.202 0.798 31 H 0.183 0.817 32 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.824 -17.979 -1.178 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.178 1.178 7 C -0.581 4.581 8 H 0.098 0.902 9 C -0.002 4.002 10 C -0.129 4.129 11 C 0.313 3.687 12 O -0.434 6.434 13 O -0.262 6.262 14 C -0.028 4.028 15 C -0.003 4.003 16 N -0.143 5.143 17 C -0.185 4.185 18 C -0.202 4.202 19 N -0.256 5.256 20 C -0.105 4.105 21 H 0.072 0.928 22 H 0.007 0.993 23 H 0.007 0.993 24 H 0.138 0.862 25 H 0.138 0.862 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.144 0.856 29 H 0.150 0.850 30 H 0.218 0.782 31 H 0.200 0.800 32 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.025 -18.358 -0.670 20.046 hybrid contribution -0.270 1.401 -0.540 1.526 sum 7.754 -16.957 -1.210 18.685 Atomic orbital electron populations 1.70158 1.08275 1.27933 1.51300 1.26106 0.95706 1.03919 0.94563 0.85316 0.78710 0.77705 0.78506 1.19763 1.21363 1.17809 1.21654 0.94196 0.91204 1.51020 0.90202 1.18823 0.93788 0.92136 0.95424 1.21534 0.99239 0.85495 1.06668 1.24590 0.87130 0.86344 0.70592 1.90663 1.17769 1.88156 1.46853 1.86438 1.41096 1.14365 1.84289 1.23328 0.94334 0.82205 1.02941 1.21679 0.91614 0.78095 1.08887 1.45548 1.41060 1.20509 1.07195 1.23280 1.04601 0.96586 0.94004 1.22721 1.05254 1.01189 0.91063 1.70277 1.20523 1.21378 1.13377 1.25653 0.98704 0.91064 0.95038 0.92789 0.99283 0.99264 0.86151 0.86163 0.91591 0.91804 0.85552 0.85007 0.78153 0.80022 0.75312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.51 13.29 21.45 0.28 -57.22 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 3 Si 0.97 42.74 29.54 68.60 2.03 44.77 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.54 -29.39 9.11 25.60 0.23 -29.16 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.04 1.86 4.26 29.85 0.13 1.99 16 10 C -0.09 -3.41 5.75 29.85 0.17 -3.24 16 11 C 0.47 16.87 7.96 71.24 0.57 17.43 16 12 O -0.55 -24.46 15.73 21.98 0.35 -24.11 16 13 O -0.35 -9.12 10.22 -51.46 -0.53 -9.65 16 14 C 0.05 1.02 5.79 71.98 0.42 1.43 16 15 C 0.12 1.51 6.53 86.38 0.56 2.08 16 16 N -0.46 -7.55 2.75 -529.06 -1.46 -9.01 16 17 C -0.05 -0.88 11.58 83.09 0.96 0.09 16 18 C -0.06 -1.15 11.87 83.52 0.99 -0.15 16 19 N -0.54 -13.10 11.25 -200.30 -2.25 -15.35 16 20 C 0.18 3.35 12.56 180.26 2.26 5.61 16 21 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 22 H -0.01 -0.66 8.10 -2.38 -0.02 -0.68 16 23 H -0.01 -0.65 8.10 -2.38 -0.02 -0.67 16 24 H 0.12 3.86 8.14 -2.38 -0.02 3.84 16 25 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 26 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 27 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 28 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.13 1.10 8.14 -2.39 -0.02 1.09 16 30 H 0.20 2.09 8.06 -2.91 -0.02 2.06 16 31 H 0.18 2.91 8.06 -2.91 -0.02 2.88 16 32 H 0.23 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -75.44 290.23 6.28 -69.15 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: 1.10 Total: 5.18 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 6.76 Total: -3.75 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -3.42 Total: -81.58 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.18 Total: -33.76 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -75.44 6.28 -69.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616740.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.327 kcal (2) G-P(sol) polarization free energy of solvation -75.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds