Wall clock time and date at job start Sun Mar 29 2020 22:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99947 * 2 1 4 4 H 1.48500 * 109.47407 * 270.00483 * 3 2 1 5 5 H 1.48506 * 109.47302 * 30.00393 * 3 2 1 6 6 H 1.48507 * 109.47204 * 150.00245 * 3 2 1 7 7 C 1.37874 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99979 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00242 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47226 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46835 * 180.02562 * 10 9 7 12 12 O 1.20825 * 120.00239 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99712 * 179.97438 * 11 10 9 14 14 C 1.45196 * 116.99872 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47123 * 179.97438 * 14 13 11 16 16 N 1.46506 * 109.47035 * 179.97438 * 15 14 13 17 17 C 1.34944 * 126.03372 * 125.00124 * 16 15 14 18 18 C 1.35317 * 107.74658 * 179.97438 * 17 16 15 19 19 C 1.39871 * 107.91935 * 0.02562 * 18 17 16 20 20 N 1.30845 * 108.20108 * 359.74200 * 19 18 17 21 21 H 0.97002 * 119.99973 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47017 * 59.99790 * 9 7 2 23 23 H 1.09000 * 109.47368 * 300.00765 * 9 7 2 24 24 H 1.08997 * 109.47192 * 60.00491 * 10 9 7 25 25 H 1.09000 * 109.47091 * 299.99687 * 10 9 7 26 26 H 1.09004 * 109.47123 * 60.00186 * 14 13 11 27 27 H 1.09004 * 109.47572 * 300.00153 * 14 13 11 28 28 H 1.09004 * 109.46930 * 60.00116 * 15 14 13 29 29 H 1.09000 * 109.47312 * 300.00059 * 15 14 13 30 30 H 1.08001 * 126.12891 * 0.02562 * 17 16 15 31 31 H 1.08002 * 126.04160 * 179.97438 * 18 17 16 32 32 H 1.07995 * 125.90070 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5285 -2.6365 -0.0022 12 8 6.1327 -1.5902 -0.0018 13 8 6.1997 -3.7990 -0.0026 14 6 7.6496 -3.7230 -0.0031 15 6 8.2344 -5.1369 -0.0029 16 7 9.6975 -5.0602 -0.0040 17 6 10.5237 -5.6433 0.8895 18 6 11.7937 -5.3335 0.5403 19 6 11.7419 -4.5331 -0.6056 20 7 10.4860 -4.3729 -0.9358 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6804 0.8889 23 1 3.8746 -0.6800 -0.8910 24 1 3.6579 -3.1498 -0.8925 25 1 3.6585 -3.1510 0.8875 26 1 7.9859 -3.1910 0.8869 27 1 7.9854 -3.1907 -0.8932 28 1 7.8982 -5.6693 -0.8927 29 1 7.8988 -5.6688 0.8873 30 1 10.2248 -6.2494 1.7319 31 1 12.6892 -5.6478 1.0558 32 1 12.5919 -4.1218 -1.1297 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617803.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:04 Heat of formation + Delta-G solvation = -15.291839 kcal Electronic energy + Delta-G solvation = -15813.592925 eV Core-core repulsion = 12969.186947 eV Total energy + Delta-G solvation = -2844.405978 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.39530 -40.14950 -36.62147 -34.07565 -33.65830 -31.48355 -30.51042 -29.10556 -26.51069 -23.96913 -21.87613 -21.33671 -20.83125 -19.88343 -17.85147 -17.16493 -16.80013 -16.59367 -15.85797 -15.18553 -14.58671 -14.29788 -14.14785 -13.79913 -13.15767 -13.08297 -12.86875 -12.66648 -12.07560 -12.02456 -11.48900 -11.05550 -10.93819 -10.54731 -10.37453 -10.20834 -10.01272 -9.78301 -9.70108 -9.29384 -8.90413 -8.58292 -6.09946 -4.10168 1.59045 2.01258 2.59576 2.60171 3.04378 3.32798 3.39855 3.48797 4.20422 4.43998 4.51558 4.54865 4.74561 4.90142 5.18780 5.19359 5.24792 5.38573 5.49389 5.57988 5.73031 5.93584 5.95498 6.35822 6.40294 6.67960 6.69205 7.19823 7.26695 7.42336 7.67210 8.10259 8.43454 8.92015 9.51744 11.02554 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.062935 B = 0.003741 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.798600 B = 7482.204503 C = 7787.901726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.093 4.093 11 C 0.460 3.540 12 O -0.506 6.506 13 O -0.363 6.363 14 C 0.054 3.946 15 C 0.137 3.863 16 N -0.372 5.372 17 C 0.057 3.943 18 C -0.276 4.276 19 C 0.045 3.955 20 N -0.294 5.294 21 H 0.265 0.735 22 H 0.026 0.974 23 H 0.022 0.978 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.176 0.824 31 H 0.148 0.852 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.558 -12.901 1.927 24.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.131 4.131 11 C 0.303 3.697 12 O -0.393 6.393 13 O -0.281 6.281 14 C -0.021 4.021 15 C 0.016 3.984 16 N -0.156 5.156 17 C -0.088 4.088 18 C -0.305 4.305 19 C -0.141 4.141 20 N -0.115 5.115 21 H 0.074 0.926 22 H 0.044 0.956 23 H 0.040 0.960 24 H 0.119 0.881 25 H 0.118 0.882 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.193 0.807 31 H 0.166 0.834 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 19.617 -11.943 1.108 22.993 hybrid contribution 1.118 0.592 0.620 1.409 sum 20.736 -11.351 1.728 23.702 Atomic orbital electron populations 1.69903 1.06269 1.27121 1.50522 1.24953 0.94731 0.99214 0.94181 0.86805 0.80553 0.83404 0.78837 1.20119 1.21267 1.18633 1.21013 0.88763 0.94828 1.51971 0.90606 1.19496 0.96983 0.89562 0.97995 1.21566 0.82895 1.03654 1.04981 1.24816 0.92671 0.80694 0.71484 1.90645 1.70556 1.32992 1.45077 1.86465 1.19763 1.36804 1.85042 1.23000 0.78564 0.96529 1.04040 1.21435 0.74051 0.97310 1.05634 1.48548 1.06004 1.39762 1.21248 1.22631 0.90754 0.99476 0.95973 1.21544 0.97234 1.09394 1.02359 1.23955 0.94931 0.98453 0.96765 1.77434 1.03061 1.17638 1.13374 0.92556 0.95582 0.96001 0.88144 0.88164 0.91018 0.89948 0.88353 0.87277 0.80711 0.83387 0.79927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.53 -14.79 9.66 -34.44 -0.33 -15.13 16 8 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.00 -0.07 3.33 -27.89 -0.09 -0.16 16 10 C -0.09 -1.78 5.75 -27.88 -0.16 -1.94 16 11 C 0.46 8.47 7.96 36.01 0.29 8.76 16 12 O -0.51 -10.95 15.73 -18.75 -0.29 -11.25 16 13 O -0.36 -5.45 10.22 -39.26 -0.40 -5.85 16 14 C 0.05 0.70 5.66 37.16 0.21 0.91 16 15 C 0.14 1.30 6.89 -4.04 -0.03 1.27 16 16 N -0.37 -3.96 3.68 -61.36 -0.23 -4.19 16 17 C 0.06 0.48 11.45 -17.22 -0.20 0.28 16 18 C -0.28 -2.31 10.80 -40.01 -0.43 -2.74 16 19 C 0.05 0.45 12.03 -17.36 -0.21 0.24 16 20 N -0.29 -3.70 12.42 30.63 0.38 -3.32 16 21 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 22 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 23 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 24 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 25 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 26 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 27 H 0.08 1.21 8.13 -51.93 -0.42 0.79 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.11 0.72 8.07 -51.93 -0.42 0.31 16 30 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 287.15 15.07 4.33 4.33 Total: -1.00 -34.24 287.15 -5.31 -39.55 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -4.15 Total: -3.51 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -1.05 Total: -6.54 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.93 Total: -34.22 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.70 Total: -17.10 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.24 -5.31 -39.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617803.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.259 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds