Wall clock time and date at job start Sun Mar 29 2020 21:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99768 * 2 1 4 4 H 1.48498 * 109.46783 * 269.99779 * 3 2 1 5 5 H 1.48499 * 109.47261 * 29.99831 * 3 2 1 6 6 H 1.48503 * 109.47041 * 150.00261 * 3 2 1 7 7 C 1.37873 * 120.00384 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99654 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00498 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46700 * 180.02562 * 10 9 7 12 12 O 1.20825 * 120.00092 * 359.97438 * 11 10 9 13 13 O 1.34236 * 119.99872 * 180.02562 * 11 10 9 14 14 C 1.45197 * 116.99992 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47059 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47192 * 179.97438 * 15 14 13 17 17 C 1.39874 * 126.04031 * 269.99886 * 16 15 14 18 18 N 1.30836 * 108.20052 * 179.73886 * 17 16 15 19 19 N 1.40084 * 108.20904 * 0.40640 * 18 17 16 20 20 H 0.97001 * 126.04219 * 179.85882 * 19 18 17 21 21 C 1.34947 * 107.92164 * 359.58781 * 19 18 17 22 22 H 0.97007 * 120.00206 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46990 * 60.00008 * 9 7 2 24 24 H 1.09004 * 109.46927 * 300.00461 * 9 7 2 25 25 H 1.09001 * 109.47234 * 60.00605 * 10 9 7 26 26 H 1.08990 * 109.47368 * 299.99842 * 10 9 7 27 27 H 1.08994 * 109.47169 * 59.99154 * 14 13 11 28 28 H 1.09004 * 109.46698 * 299.99448 * 14 13 11 29 29 H 1.09007 * 109.47384 * 59.99927 * 15 14 13 30 30 H 1.09002 * 109.46954 * 299.99944 * 15 14 13 31 31 H 1.08001 * 125.89534 * 0.02562 * 17 16 15 32 32 H 1.08006 * 126.12506 * 180.22115 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5286 -2.6364 0.0001 12 8 6.1327 -1.5900 -0.0004 13 8 6.1998 -3.7989 -0.0003 14 6 7.6498 -3.7229 -0.0008 15 6 8.2346 -5.1367 -0.0006 16 6 9.7395 -5.0578 -0.0017 17 6 10.5605 -5.0153 -1.1334 18 7 11.8042 -4.9442 -0.7335 19 7 11.8146 -4.9487 0.6673 20 1 12.6019 -4.9068 1.2323 21 6 10.5354 -5.0155 1.0918 22 1 -0.4851 0.8401 0.0004 23 1 3.8752 -0.6796 0.8894 24 1 3.8745 -0.6807 -0.8905 25 1 3.6579 -3.1505 -0.8897 26 1 3.6586 -3.1501 0.8902 27 1 7.9860 -3.1907 0.8890 28 1 7.9853 -3.1906 -0.8909 29 1 7.8983 -5.6691 -0.8903 30 1 7.8989 -5.6685 0.8897 31 1 10.2253 -5.0329 -2.1599 32 1 10.2059 -5.0327 2.1203 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813072101.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:52 Heat of formation + Delta-G solvation = -29.725636 kcal Electronic energy + Delta-G solvation = -15747.932476 eV Core-core repulsion = 12902.900601 eV Total energy + Delta-G solvation = -2845.031874 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.49854 -39.97577 -36.42861 -33.66234 -33.54340 -31.60203 -31.37439 -28.67381 -26.40689 -23.59204 -22.29379 -21.64511 -20.33038 -19.73637 -18.08981 -17.40891 -16.63398 -16.36611 -15.54427 -14.84604 -14.77804 -14.36887 -14.13387 -13.41282 -13.34223 -12.96927 -12.68044 -12.59671 -11.81689 -11.66389 -11.38845 -11.01662 -10.94734 -10.32278 -10.29377 -10.13528 -9.98262 -9.91470 -9.68495 -9.24666 -8.84861 -8.54867 -6.06455 -4.06199 1.55130 2.37710 2.57105 2.73982 3.15610 3.35136 3.42038 3.51333 4.46436 4.47110 4.57147 4.85791 5.04661 5.13448 5.26978 5.28410 5.34518 5.44748 5.60206 5.88517 5.97115 6.02828 6.06893 6.29772 6.52722 6.84801 6.90817 7.25753 7.30494 7.32819 7.72086 8.25784 8.48237 8.96126 9.55516 11.06137 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.061090 B = 0.003674 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.231302 B = 7618.533141 C = 7865.550107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.096 4.096 11 C 0.458 3.542 12 O -0.513 6.513 13 O -0.365 6.365 14 C 0.069 3.931 15 C -0.038 4.038 16 C -0.236 4.236 17 C 0.060 3.940 18 N -0.297 5.297 19 N -0.479 5.479 20 H 0.440 0.560 21 C 0.066 3.934 22 H 0.264 0.736 23 H 0.025 0.975 24 H 0.021 0.979 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.185 0.815 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.554 -11.897 2.030 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.133 4.133 11 C 0.302 3.698 12 O -0.400 6.400 13 O -0.283 6.283 14 C -0.006 4.006 15 C -0.077 4.077 16 C -0.248 4.248 17 C -0.127 4.127 18 N -0.120 5.120 19 N -0.186 5.186 20 H 0.283 0.717 21 C -0.082 4.082 22 H 0.074 0.926 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.202 0.798 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 21.830 -11.401 1.659 24.683 hybrid contribution 0.062 1.018 0.576 1.171 sum 21.892 -10.383 2.234 24.332 Atomic orbital electron populations 1.69905 1.06275 1.27060 1.50705 1.24956 0.94719 0.99200 0.94250 0.86805 0.80572 0.83427 0.78799 1.20157 1.21333 1.18609 1.21040 0.88878 0.94789 1.51732 0.90630 1.19480 0.96873 0.89757 0.97901 1.21531 0.83549 1.03410 1.04835 1.24707 0.92699 0.80983 0.71458 1.90619 1.70757 1.33186 1.45464 1.86525 1.21110 1.36064 1.84609 1.22974 0.77368 0.97802 1.02434 1.19739 0.88356 0.95361 1.04230 1.19929 0.96095 1.16702 0.92058 1.23917 0.89785 0.98790 1.00204 1.77349 1.21329 1.24400 0.88875 1.46316 1.07376 1.59085 1.05867 0.71672 1.22487 0.84656 1.00763 1.00262 0.92610 0.95640 0.96070 0.88319 0.88337 0.91750 0.91515 0.89848 0.90171 0.79765 0.80438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.53 -14.85 9.66 -34.44 -0.33 -15.18 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.00 -0.06 3.33 -27.89 -0.09 -0.16 16 10 C -0.10 -1.86 5.75 -27.88 -0.16 -2.02 16 11 C 0.46 8.53 7.96 36.01 0.29 8.81 16 12 O -0.51 -11.07 15.73 -18.75 -0.29 -11.36 16 13 O -0.37 -5.62 10.22 -39.27 -0.40 -6.03 16 14 C 0.07 0.86 5.45 37.16 0.20 1.06 16 15 C -0.04 -0.35 6.08 -27.88 -0.17 -0.52 16 16 C -0.24 -2.13 5.35 -105.05 -0.56 -2.70 16 17 C 0.06 0.58 11.96 -17.36 -0.21 0.37 16 18 N -0.30 -3.14 12.70 30.63 0.39 -2.75 16 19 N -0.48 -3.70 7.36 30.45 0.22 -3.48 16 20 H 0.44 1.96 8.96 -182.61 -1.64 0.33 16 21 C 0.07 0.49 11.90 -17.22 -0.21 0.29 16 22 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 23 H 0.03 0.64 7.15 -51.93 -0.37 0.27 16 24 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 25 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 26 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 27 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.19 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.18 0.76 8.06 -52.48 -0.42 0.33 16 LS Contribution 286.00 15.07 4.31 4.31 Total: -1.00 -34.65 286.00 -6.38 -41.02 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -5.37 Total: -4.31 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.34 Total: -8.09 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 1.39 Total: -33.09 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.70 Total: -17.39 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.65 -6.38 -41.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813072101.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.297 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds