Wall clock time and date at job start Sun Mar 29 2020 21:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99768 * 2 1 4 4 H 1.48498 * 109.46783 * 269.99779 * 3 2 1 5 5 H 1.48499 * 109.47261 * 29.99831 * 3 2 1 6 6 H 1.48503 * 109.47041 * 150.00261 * 3 2 1 7 7 C 1.37873 * 120.00384 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99654 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00498 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46700 * 180.02562 * 10 9 7 12 12 O 1.20825 * 120.00092 * 359.97438 * 11 10 9 13 13 O 1.34236 * 119.99872 * 180.02562 * 11 10 9 14 14 C 1.45197 * 116.99992 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47059 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47192 * 179.97438 * 15 14 13 17 17 C 1.39874 * 126.04031 * 269.99886 * 16 15 14 18 18 N 1.30836 * 108.20052 * 179.73886 * 17 16 15 19 19 N 1.40084 * 108.20904 * 0.40640 * 18 17 16 20 20 H 0.97001 * 126.04219 * 179.85882 * 19 18 17 21 21 C 1.34947 * 107.92164 * 359.58781 * 19 18 17 22 22 H 0.97007 * 120.00206 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46990 * 60.00008 * 9 7 2 24 24 H 1.09004 * 109.46927 * 300.00461 * 9 7 2 25 25 H 1.09001 * 109.47234 * 60.00605 * 10 9 7 26 26 H 1.08990 * 109.47368 * 299.99842 * 10 9 7 27 27 H 1.08994 * 109.47169 * 59.99154 * 14 13 11 28 28 H 1.09004 * 109.46698 * 299.99448 * 14 13 11 29 29 H 1.09007 * 109.47384 * 59.99927 * 15 14 13 30 30 H 1.09002 * 109.46954 * 299.99944 * 15 14 13 31 31 H 1.08001 * 125.89534 * 0.02562 * 17 16 15 32 32 H 1.08006 * 126.12506 * 180.22115 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5286 -2.6364 0.0001 12 8 6.1327 -1.5900 -0.0004 13 8 6.1998 -3.7989 -0.0003 14 6 7.6498 -3.7229 -0.0008 15 6 8.2346 -5.1367 -0.0006 16 6 9.7395 -5.0578 -0.0017 17 6 10.5605 -5.0153 -1.1334 18 7 11.8042 -4.9442 -0.7335 19 7 11.8146 -4.9487 0.6673 20 1 12.6019 -4.9068 1.2323 21 6 10.5354 -5.0155 1.0918 22 1 -0.4851 0.8401 0.0004 23 1 3.8752 -0.6796 0.8894 24 1 3.8745 -0.6807 -0.8905 25 1 3.6579 -3.1505 -0.8897 26 1 3.6586 -3.1501 0.8902 27 1 7.9860 -3.1907 0.8890 28 1 7.9853 -3.1906 -0.8909 29 1 7.8983 -5.6691 -0.8903 30 1 7.8989 -5.6685 0.8897 31 1 10.2253 -5.0329 -2.1599 32 1 10.2059 -5.0327 2.1203 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813072101.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:52 Heat of formation + Delta-G solvation = -52.713122 kcal Electronic energy + Delta-G solvation = -15748.929288 eV Core-core repulsion = 12902.900601 eV Total energy + Delta-G solvation = -2846.028687 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.13970 -41.38048 -37.77859 -35.60504 -34.44441 -33.37202 -32.23227 -29.61411 -28.15166 -24.68849 -23.31583 -22.92255 -21.42859 -20.87891 -19.34710 -18.67339 -18.23069 -17.65680 -16.95784 -16.25172 -15.73242 -15.53930 -15.34118 -14.80460 -14.52493 -14.32314 -13.96870 -13.73683 -13.42947 -12.94113 -12.70897 -12.59434 -12.20504 -11.99729 -11.80078 -11.71078 -11.43443 -11.37401 -11.30179 -10.77366 -10.63884 -9.51046 -8.30401 -6.34308 0.94231 1.27154 1.35552 1.37597 1.51267 1.57225 1.96172 2.09606 2.35869 3.05133 3.78682 3.93707 4.03855 4.13431 4.22087 4.35779 4.40301 4.44301 4.59311 4.67732 4.82179 4.90561 5.10444 5.27499 5.30327 5.39561 5.47625 5.61688 5.66452 6.23359 6.42230 6.68353 6.71696 6.86507 7.30927 8.85154 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.061090 B = 0.003674 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.231302 B = 7618.533141 C = 7865.550107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.001 3.999 10 C -0.092 4.092 11 C 0.469 3.531 12 O -0.546 6.546 13 O -0.355 6.355 14 C 0.065 3.935 15 C -0.024 4.024 16 C -0.258 4.258 17 C 0.050 3.950 18 N -0.335 5.335 19 N -0.473 5.473 20 H 0.452 0.548 21 C 0.079 3.921 22 H 0.268 0.732 23 H 0.017 0.983 24 H 0.014 0.986 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.197 0.803 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.018 -12.386 2.650 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.568 4.568 8 H 0.071 0.929 9 C -0.037 4.037 10 C -0.129 4.129 11 C 0.314 3.686 12 O -0.436 6.436 13 O -0.272 6.272 14 C -0.009 4.009 15 C -0.063 4.063 16 C -0.269 4.269 17 C -0.136 4.136 18 N -0.158 5.158 19 N -0.182 5.182 20 H 0.298 0.702 21 C -0.070 4.070 22 H 0.077 0.923 23 H 0.035 0.965 24 H 0.033 0.967 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.214 0.786 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 23.323 -11.922 2.278 26.293 hybrid contribution -0.357 1.065 0.412 1.196 sum 22.966 -10.857 2.690 25.545 Atomic orbital electron populations 1.70021 1.07849 1.28176 1.52281 1.25801 0.95494 1.02894 0.94194 0.85827 0.79310 0.79388 0.79187 1.19344 1.20451 1.18249 1.21358 0.90944 0.93913 1.50621 0.92928 1.19328 0.94329 0.93018 0.97023 1.21334 0.84636 1.00439 1.06523 1.24319 0.92341 0.81239 0.70715 1.90612 1.71327 1.34470 1.47226 1.86494 1.22919 1.34048 1.83751 1.23290 0.75322 1.00218 1.02071 1.19643 0.88278 0.93066 1.05299 1.19999 0.96004 1.18469 0.92473 1.24251 0.89780 0.98354 1.01243 1.77295 1.22059 1.25980 0.90474 1.46384 1.08284 1.58303 1.05250 0.70168 1.23039 0.84139 0.98376 1.01449 0.92314 0.96497 0.96716 0.86748 0.86673 0.91812 0.92298 0.89251 0.88693 0.78605 0.77108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.34 13.96 21.45 0.30 -58.04 16 2 C 0.01 0.82 5.47 84.65 0.46 1.28 16 3 Si 0.94 45.59 27.47 68.60 1.88 47.47 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -12.31 6.54 99.48 0.65 -11.66 16 7 C -0.53 -29.96 9.66 25.60 0.25 -29.72 16 8 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 9 C 0.00 0.03 3.33 29.85 0.10 0.13 16 10 C -0.09 -3.43 5.75 29.85 0.17 -3.26 16 11 C 0.47 16.67 7.96 71.24 0.57 17.24 16 12 O -0.55 -22.91 15.73 21.97 0.35 -22.57 16 13 O -0.36 -10.15 10.22 -51.48 -0.53 -10.67 16 14 C 0.06 1.49 5.45 71.98 0.39 1.89 16 15 C -0.02 -0.38 6.08 29.85 0.18 -0.20 16 16 C -0.26 -4.10 5.35 -20.14 -0.11 -4.21 16 17 C 0.05 0.90 11.96 85.24 1.02 1.92 16 18 N -0.34 -6.74 12.70 -57.02 -0.72 -7.46 16 19 N -0.47 -6.41 7.36 -57.59 -0.42 -6.84 16 20 H 0.45 3.19 8.96 -213.33 -1.91 1.27 16 21 C 0.08 0.95 11.90 83.54 0.99 1.95 16 22 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 23 H 0.02 0.83 7.15 -2.39 -0.02 0.81 16 24 H 0.01 0.71 7.53 -2.39 -0.02 0.70 16 25 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 26 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 27 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 28 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 29 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -73.67 286.00 4.04 -69.63 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -0.84 Total: 1.48 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 4.03 Total: -12.99 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -0.85 Total: -72.34 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.18 Total: -33.24 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.47 kcal Total: -73.67 4.04 -69.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813072101.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.918 kcal (2) G-P(sol) polarization free energy of solvation -73.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds