Wall clock time and date at job start Sun Mar 29 2020 23:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47419 * 306.77368 * 3 2 1 5 5 C 1.34778 * 119.99967 * 180.02562 * 4 3 2 6 6 O 1.21585 * 119.99945 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00134 * 180.02562 * 5 4 3 8 8 C 1.47031 * 125.64691 * 0.02562 * 7 5 4 9 9 C 1.54327 * 107.26879 * 181.01415 * 8 7 5 10 10 C 1.55156 * 102.94181 * 22.19441 * 9 8 7 11 11 O 1.42897 * 111.00579 * 82.57426 * 10 9 8 12 12 C 1.50708 * 110.99876 * 206.38340 * 10 9 8 13 13 H 1.07995 * 120.00149 * 0.02562 * 12 10 9 14 14 C 1.37875 * 119.99534 * 180.02562 * 12 10 9 15 15 N 1.31519 * 120.00164 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99936 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47324 * 59.99299 * 16 14 12 18 18 H 1.48498 * 109.47370 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47013 * 299.99548 * 16 14 12 20 20 C 1.47422 * 125.65171 * 179.97438 * 7 5 4 21 21 H 4.40632 * 5.51424 * 179.97438 * 4 1 2 22 22 H 1.09006 * 109.46972 * 186.77597 * 3 2 1 23 23 H 1.08998 * 109.47197 * 66.78098 * 3 2 1 24 24 H 0.97000 * 120.00179 * 0.02562 * 4 3 2 25 25 H 1.08998 * 109.88059 * 61.59780 * 8 7 5 26 26 H 1.08994 * 109.87878 * 300.43060 * 8 7 5 27 27 H 1.09001 * 110.71763 * 140.55775 * 9 8 7 28 28 H 1.08997 * 110.72099 * 263.64813 * 9 8 7 29 29 H 0.96698 * 114.00190 * 179.97438 * 11 10 9 30 30 H 0.97003 * 119.99594 * 180.02562 * 15 14 12 31 31 H 1.09000 * 110.36378 * 37.07938 * 20 7 5 32 32 H 1.09001 * 110.46274 * 274.80114 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8260 1.1063 5 6 4.4599 -0.9723 1.3038 6 8 5.2497 -0.4187 0.5635 7 7 4.9096 -1.7332 2.3213 8 6 4.0692 -2.4570 3.2865 9 6 5.0163 -3.1652 4.2780 10 6 6.3258 -2.3418 4.1561 11 8 6.2691 -1.1664 4.9667 12 6 7.5264 -3.1812 4.5100 13 1 7.3972 -4.2136 4.7995 14 6 8.7898 -2.6309 4.4642 15 7 8.9471 -1.3738 4.1112 16 14 10.2781 -3.6714 4.9022 17 1 10.3588 -4.8327 3.9803 18 1 11.5099 -2.8519 4.7744 19 1 10.1487 -4.1569 6.2997 20 6 6.3256 -1.9785 2.6502 21 1 -1.0498 0.0000 0.0004 22 1 3.0089 1.0214 0.1213 23 1 3.0095 -0.4043 -0.9444 24 1 2.5047 -1.2679 1.6967 25 1 3.4584 -3.1947 2.7661 26 1 3.4302 -1.7546 3.8215 27 1 4.6212 -3.1133 5.2926 28 1 5.1800 -4.2013 3.9820 29 1 7.0657 -0.6199 4.9233 30 1 9.8361 -0.9869 4.0787 31 1 6.9165 -1.0791 2.4770 32 1 6.7158 -2.8076 2.0599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825590882.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:08 Heat of formation + Delta-G solvation = -19.010490 kcal Electronic energy + Delta-G solvation = -16941.256121 eV Core-core repulsion = 14096.688890 eV Total energy + Delta-G solvation = -2844.567231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.66409 -37.46636 -35.18664 -34.24586 -32.43100 -32.13530 -30.10362 -27.94833 -26.85806 -24.69166 -22.51067 -19.67408 -19.65100 -18.65730 -17.37961 -17.02006 -15.81196 -15.48653 -15.00358 -14.56643 -14.26727 -14.14195 -13.33295 -13.03054 -12.98224 -12.77611 -12.06221 -11.60903 -11.47408 -11.02388 -10.91483 -10.78683 -10.58675 -10.55466 -10.49263 -10.17062 -9.64772 -9.38895 -8.87820 -8.67119 -8.36646 -7.68689 -6.28100 -4.37950 2.30287 2.63170 3.22473 3.28634 3.29966 3.41711 3.71923 4.14626 4.26383 4.52965 4.98869 5.41616 5.52204 5.56907 5.66196 5.71804 5.81167 6.04090 6.11692 6.51698 6.64820 6.71503 6.87731 6.95380 7.23525 7.33306 7.35836 7.61093 7.75435 8.01221 8.50428 8.65787 9.08806 9.31944 9.47832 10.79158 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.049865 B = 0.005666 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.381876 B = 4940.480487 C = 5200.250062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.197 4.197 3 C 0.248 3.752 4 N -0.751 5.751 5 C 0.718 3.282 6 O -0.596 6.596 7 N -0.626 5.626 8 C 0.105 3.895 9 C -0.117 4.117 10 C 0.249 3.751 11 O -0.584 6.584 12 C -0.539 4.539 13 H 0.067 0.933 14 C 0.071 3.929 15 N -0.894 5.894 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.111 3.889 21 H 0.220 0.780 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.396 0.604 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.386 0.614 30 H 0.272 0.728 31 H 0.081 0.919 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.227 -0.472 -3.831 12.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.125 3.875 4 N -0.408 5.408 5 C 0.420 3.580 6 O -0.475 6.475 7 N -0.362 5.362 8 C -0.019 4.019 9 C -0.154 4.154 10 C 0.208 3.792 11 O -0.395 6.395 12 C -0.578 4.578 13 H 0.085 0.915 14 C -0.132 4.132 15 N -0.534 5.534 16 Si 0.732 3.268 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.011 4.011 21 H 0.237 0.763 22 H 0.107 0.893 23 H 0.106 0.894 24 H 0.230 0.770 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.238 0.762 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.060 -0.105 -4.330 12.814 hybrid contribution 0.796 -0.481 0.280 0.971 sum -11.264 -0.587 -4.050 11.985 Atomic orbital electron populations 1.24946 0.95861 1.00262 0.99213 1.23106 0.94393 1.00878 1.01421 1.17855 0.82350 0.96495 0.90833 1.45069 1.05984 1.55455 1.34337 1.15444 0.81614 0.79770 0.81173 1.90892 1.54812 1.53109 1.48674 1.47889 1.09976 1.49589 1.28759 1.21944 0.94199 0.94765 0.90968 1.22601 0.96046 0.98825 0.97970 1.19591 0.91133 0.83538 0.84888 1.86056 1.45608 1.38211 1.69605 1.21466 0.90729 0.98157 1.47409 0.91492 1.25084 0.99410 0.95233 0.93466 1.69564 1.24238 1.12517 1.47042 0.86436 0.81149 0.80061 0.79104 1.19997 1.21054 1.19995 1.23179 0.77606 1.01340 0.98935 0.76275 0.89326 0.89378 0.77000 0.93111 0.92596 0.90739 0.90455 0.76156 0.91782 0.90035 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 19.25 29.55 0.57 -1.17 16 2 C -0.20 -2.29 13.46 -37.12 -0.50 -2.79 16 3 C 0.25 3.33 6.15 -6.83 -0.04 3.28 16 4 N -0.75 -11.76 5.50 -68.12 -0.37 -12.13 16 5 C 0.72 14.78 8.49 -86.92 -0.74 14.04 16 6 O -0.60 -14.42 16.60 5.29 0.09 -14.33 16 7 N -0.63 -13.11 3.33 -176.24 -0.59 -13.70 16 8 C 0.10 1.84 6.15 -3.06 -0.02 1.82 16 9 C -0.12 -2.29 6.12 -24.90 -0.15 -2.44 16 10 C 0.25 6.04 0.89 -89.62 -0.08 5.96 16 11 O -0.58 -15.09 13.18 -35.23 -0.46 -15.55 16 12 C -0.54 -13.96 8.25 -34.44 -0.28 -14.24 16 13 H 0.07 1.68 7.76 -52.49 -0.41 1.27 16 14 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 15 N -0.89 -23.89 10.72 55.43 0.59 -23.29 16 16 Si 0.91 20.24 29.54 -169.99 -5.02 15.21 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 C 0.11 2.70 5.63 -2.53 -0.01 2.69 16 21 H 0.22 1.21 7.80 -54.10 -0.42 0.78 16 22 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 23 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.40 5.38 7.44 -40.82 -0.30 5.08 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.08 1.42 8.02 -51.93 -0.42 1.01 16 29 H 0.39 10.34 6.93 45.56 0.32 10.66 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.08 2.23 7.64 -51.93 -0.40 1.83 16 32 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 LS Contribution 282.51 15.07 4.26 4.26 Total: -1.00 -30.21 282.51 -6.16 -36.37 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -3.30 Total: 14.26 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -1.35 Total: 8.90 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.37 Total: -49.12 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.38 Total: -29.88 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.21 -6.16 -36.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825590882.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.358 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds