Wall clock time and date at job start Sun Mar 29 2020 23:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47419 * 306.77368 * 3 2 1 5 5 C 1.34778 * 119.99967 * 180.02562 * 4 3 2 6 6 O 1.21585 * 119.99945 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00134 * 180.02562 * 5 4 3 8 8 C 1.47031 * 125.64691 * 0.02562 * 7 5 4 9 9 C 1.54327 * 107.26879 * 181.01415 * 8 7 5 10 10 C 1.55156 * 102.94181 * 22.19441 * 9 8 7 11 11 O 1.42897 * 111.00579 * 82.57426 * 10 9 8 12 12 C 1.50708 * 110.99876 * 206.38340 * 10 9 8 13 13 H 1.07995 * 120.00149 * 0.02562 * 12 10 9 14 14 C 1.37875 * 119.99534 * 180.02562 * 12 10 9 15 15 N 1.31519 * 120.00164 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99936 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47324 * 59.99299 * 16 14 12 18 18 H 1.48498 * 109.47370 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47013 * 299.99548 * 16 14 12 20 20 C 1.47422 * 125.65171 * 179.97438 * 7 5 4 21 21 H 4.40632 * 5.51424 * 179.97438 * 4 1 2 22 22 H 1.09006 * 109.46972 * 186.77597 * 3 2 1 23 23 H 1.08998 * 109.47197 * 66.78098 * 3 2 1 24 24 H 0.97000 * 120.00179 * 0.02562 * 4 3 2 25 25 H 1.08998 * 109.88059 * 61.59780 * 8 7 5 26 26 H 1.08994 * 109.87878 * 300.43060 * 8 7 5 27 27 H 1.09001 * 110.71763 * 140.55775 * 9 8 7 28 28 H 1.08997 * 110.72099 * 263.64813 * 9 8 7 29 29 H 0.96698 * 114.00190 * 179.97438 * 11 10 9 30 30 H 0.97003 * 119.99594 * 180.02562 * 15 14 12 31 31 H 1.09000 * 110.36378 * 37.07938 * 20 7 5 32 32 H 1.09001 * 110.46274 * 274.80114 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8260 1.1063 5 6 4.4599 -0.9723 1.3038 6 8 5.2497 -0.4187 0.5635 7 7 4.9096 -1.7332 2.3213 8 6 4.0692 -2.4570 3.2865 9 6 5.0163 -3.1652 4.2780 10 6 6.3258 -2.3418 4.1561 11 8 6.2691 -1.1664 4.9667 12 6 7.5264 -3.1812 4.5100 13 1 7.3972 -4.2136 4.7995 14 6 8.7898 -2.6309 4.4642 15 7 8.9471 -1.3738 4.1112 16 14 10.2781 -3.6714 4.9022 17 1 10.3588 -4.8327 3.9803 18 1 11.5099 -2.8519 4.7744 19 1 10.1487 -4.1569 6.2997 20 6 6.3256 -1.9785 2.6502 21 1 -1.0498 0.0000 0.0004 22 1 3.0089 1.0214 0.1213 23 1 3.0095 -0.4043 -0.9444 24 1 2.5047 -1.2679 1.6967 25 1 3.4584 -3.1947 2.7661 26 1 3.4302 -1.7546 3.8215 27 1 4.6212 -3.1133 5.2926 28 1 5.1800 -4.2013 3.9820 29 1 7.0657 -0.6199 4.9233 30 1 9.8361 -0.9869 4.0787 31 1 6.9165 -1.0791 2.4770 32 1 6.7158 -2.8076 2.0599 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825590882.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:07 Heat of formation + Delta-G solvation = -42.069982 kcal Electronic energy + Delta-G solvation = -16942.256055 eV Core-core repulsion = 14096.688890 eV Total energy + Delta-G solvation = -2845.567165 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.27610 -39.17777 -36.46572 -36.07786 -34.14231 -33.51620 -31.73443 -29.65022 -28.23240 -26.46506 -24.11176 -21.46726 -21.12952 -19.86821 -19.12099 -18.46985 -17.32054 -17.00143 -16.89380 -16.22858 -15.68819 -15.60663 -14.82246 -14.62407 -14.45652 -14.39386 -13.70310 -13.47364 -13.29850 -12.80390 -12.53170 -12.31402 -12.23204 -12.09019 -11.81392 -11.46796 -11.30448 -11.19175 -10.63257 -10.35556 -10.21732 -9.35014 -8.24545 -6.41969 1.24361 1.45886 1.46002 1.54445 1.82548 2.09819 2.15003 2.40057 3.01635 3.14850 3.36137 3.81031 4.11361 4.18219 4.33830 4.50738 4.51561 4.63461 4.76302 4.99304 5.05298 5.10156 5.28734 5.34221 5.40223 5.45793 5.77717 6.02205 6.13635 6.57937 6.65325 7.00763 7.30998 7.40275 7.50067 8.81035 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.049865 B = 0.005666 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.381876 B = 4940.480487 C = 5200.250062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.250 4.250 3 C 0.249 3.751 4 N -0.730 5.730 5 C 0.712 3.288 6 O -0.641 6.641 7 N -0.632 5.632 8 C 0.106 3.894 9 C -0.111 4.111 10 C 0.232 3.768 11 O -0.591 6.591 12 C -0.558 4.558 13 H 0.072 0.928 14 C 0.025 3.975 15 N -0.919 5.919 16 Si 0.967 3.033 17 H -0.270 1.270 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.125 3.875 21 H 0.260 0.740 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.410 0.590 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.377 0.623 30 H 0.271 0.729 31 H 0.038 0.962 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.623 -1.650 -3.578 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.250 4.250 3 C 0.127 3.873 4 N -0.387 5.387 5 C 0.414 3.586 6 O -0.524 6.524 7 N -0.368 5.368 8 C -0.016 4.016 9 C -0.149 4.149 10 C 0.191 3.809 11 O -0.400 6.400 12 C -0.596 4.596 13 H 0.090 0.910 14 C -0.175 4.175 15 N -0.559 5.559 16 Si 0.792 3.208 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.193 1.193 20 C 0.001 3.999 21 H 0.276 0.724 22 H 0.098 0.902 23 H 0.103 0.897 24 H 0.246 0.754 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.228 0.772 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.535 -1.304 -4.063 15.149 hybrid contribution 1.436 -0.089 0.176 1.449 sum -13.099 -1.393 -3.887 13.735 Atomic orbital electron populations 1.25862 0.96490 0.97127 0.96039 1.22853 0.94174 1.03705 1.04272 1.17785 0.84200 0.95563 0.89795 1.44906 1.04169 1.54904 1.34755 1.15645 0.82858 0.79410 0.80678 1.90854 1.56457 1.54801 1.50242 1.47839 1.09120 1.50254 1.29598 1.22135 0.93569 0.95573 0.90291 1.22608 0.93898 0.98934 0.99424 1.19858 0.93352 0.83321 0.84330 1.86045 1.45063 1.38812 1.70088 1.21831 0.91715 0.98656 1.47417 0.90974 1.25857 1.02085 0.96206 0.93379 1.69687 1.24553 1.13880 1.47772 0.85471 0.77800 0.78531 0.79012 1.19456 1.21175 1.19325 1.22734 0.79266 0.98665 0.99225 0.72365 0.90166 0.89676 0.75431 0.89103 0.91015 0.89623 0.89071 0.77222 0.91975 0.94293 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 19.25 74.32 1.43 -0.61 16 2 C -0.25 -5.24 13.46 31.12 0.42 -4.82 16 3 C 0.25 6.57 6.15 84.57 0.52 7.09 16 4 N -0.73 -22.08 5.50 -487.70 -2.68 -24.76 16 5 C 0.71 29.45 8.49 179.05 1.52 30.97 16 6 O -0.64 -32.09 16.60 -3.98 -0.07 -32.16 16 7 N -0.63 -26.30 3.33 -829.75 -2.76 -29.06 16 8 C 0.11 3.45 6.15 86.73 0.53 3.99 16 9 C -0.11 -4.15 6.12 31.78 0.19 -3.95 16 10 C 0.23 11.28 0.89 -10.15 -0.01 11.27 16 11 O -0.59 -30.97 13.18 -148.98 -1.96 -32.93 16 12 C -0.56 -28.95 8.25 25.60 0.21 -28.74 16 13 H 0.07 3.57 7.76 -2.91 -0.02 3.55 16 14 C 0.03 1.32 5.30 84.65 0.45 1.77 16 15 N -0.92 -50.54 10.72 21.45 0.23 -50.31 16 16 Si 0.97 41.62 29.54 68.60 2.03 43.65 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 18 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 20 C 0.12 6.22 5.63 86.85 0.49 6.71 16 21 H 0.26 1.39 7.80 -4.43 -0.03 1.35 16 22 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 23 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.41 10.12 7.44 -92.71 -0.69 9.43 16 25 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.09 3.13 8.02 -2.39 -0.02 3.11 16 29 H 0.38 20.95 6.93 -74.06 -0.51 20.44 16 30 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.04 2.24 7.64 -2.39 -0.02 2.22 16 32 H 0.04 2.28 8.03 -2.39 -0.02 2.26 16 Total: -1.00 -67.36 282.51 0.48 -66.88 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: -0.06 Total: 35.02 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 5.76 Total: 23.67 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -5.21 Total: -104.13 kcal Atomic # 8 Polarization: -63.06 SS G_CDS: -2.03 Total: -65.09 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -67.36 0.48 -66.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825590882.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.812 kcal (2) G-P(sol) polarization free energy of solvation -67.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds