Wall clock time and date at job start Sun Mar 29 2020 23:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46928 * 150.53037 * 3 2 1 5 5 C 1.34783 * 119.99774 * 179.97438 * 4 3 2 6 6 O 1.21577 * 120.00173 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99641 * 179.97438 * 5 4 3 8 8 C 1.47287 * 125.79198 * 0.02562 * 7 5 4 9 9 C 1.54330 * 107.30552 * 178.92375 * 8 7 5 10 10 C 1.55159 * 102.93676 * 337.81553 * 9 8 7 11 11 O 1.42900 * 111.00319 * 277.42620 * 10 9 8 12 12 C 1.50706 * 111.03480 * 153.59504 * 10 9 8 13 13 H 1.08003 * 119.99190 * 272.60470 * 12 10 9 14 14 C 1.37874 * 120.00309 * 92.60308 * 12 10 9 15 15 N 1.31513 * 119.99912 * 173.51706 * 14 12 10 16 16 Si 1.86802 * 119.99829 * 353.52492 * 14 12 10 17 17 H 1.48498 * 109.47427 * 87.32266 * 16 14 12 18 18 H 1.48507 * 109.46836 * 207.31973 * 16 14 12 19 19 H 1.48497 * 109.47044 * 327.31373 * 16 14 12 20 20 C 1.47418 * 125.64608 * 180.02562 * 7 5 4 21 21 H 4.40645 * 5.51481 * 180.02562 * 4 1 2 22 22 H 1.08999 * 109.47686 * 30.53213 * 3 2 1 23 23 H 1.09004 * 109.46977 * 270.52795 * 3 2 1 24 24 H 0.97000 * 119.99638 * 0.02562 * 4 3 2 25 25 H 1.09000 * 109.86295 * 59.49673 * 8 7 5 26 26 H 1.08999 * 110.00297 * 298.42830 * 8 7 5 27 27 H 1.08998 * 110.72012 * 219.45160 * 9 8 7 28 28 H 1.09000 * 110.71703 * 96.17766 * 9 8 7 29 29 H 0.96698 * 113.99873 * 168.40548 * 11 10 9 30 30 H 0.97006 * 119.99842 * 179.97438 * 15 14 12 31 31 H 1.09002 * 110.36788 * 85.26770 * 20 7 5 32 32 H 1.08998 * 110.36891 * 323.05317 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2035 -0.6795 5 6 4.4588 1.4187 -0.8002 6 8 5.2492 0.6146 -0.3456 7 7 4.9075 2.5250 -1.4258 8 6 4.0677 3.5780 -2.0218 9 6 5.0162 4.6512 -2.5967 10 6 6.3251 4.4232 -1.7953 11 8 6.2686 5.0765 -0.5256 12 6 7.5271 4.8797 -2.5813 13 1 8.0123 4.2019 -3.2681 14 6 8.0074 6.1625 -2.4238 15 7 9.1283 6.5216 -3.0104 16 14 7.0660 7.3902 -1.3769 17 1 7.4919 7.2619 0.0399 18 1 7.3477 8.7675 -1.8556 19 1 5.6102 7.1174 -1.4830 20 6 6.3231 2.8832 -1.6280 21 1 -1.0502 -0.0002 0.0003 22 1 3.0098 -0.8843 -0.5220 23 1 3.0093 -0.0086 1.0277 24 1 2.5031 1.8452 -1.0419 25 1 3.4288 4.0194 -1.2569 26 1 3.4548 3.1591 -2.8199 27 1 4.6221 5.6511 -2.4155 28 1 5.1826 4.4882 -3.6615 29 1 6.9784 4.8219 0.0797 30 1 9.4660 7.4242 -2.8998 31 1 6.7113 2.4035 -2.5265 32 1 6.9151 2.5952 -0.7592 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825590883.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:11 Heat of formation + Delta-G solvation = -13.132390 kcal Electronic energy + Delta-G solvation = -16940.727737 eV Core-core repulsion = 14096.415399 eV Total energy + Delta-G solvation = -2844.312337 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95508 -37.90156 -35.40269 -34.72835 -32.61407 -32.36870 -30.33579 -28.44104 -27.07125 -24.79627 -22.55282 -19.94294 -19.84058 -18.92427 -17.61773 -17.33936 -15.97664 -15.78568 -15.08828 -14.92855 -14.59027 -14.28237 -13.64646 -13.45670 -13.22785 -12.68820 -12.38011 -11.96426 -11.65800 -11.57205 -11.04137 -11.01591 -10.67313 -10.50434 -10.39852 -10.21848 -9.87549 -9.24600 -9.07841 -8.68247 -8.53640 -8.03443 -6.20089 -4.32310 2.15897 2.52781 3.18353 3.45235 3.45776 3.51601 3.68358 4.02611 4.28401 4.49033 5.00342 5.13154 5.30158 5.41125 5.43120 5.55955 5.60862 5.76527 5.85925 6.07549 6.44354 6.47491 6.51760 6.63266 6.71093 7.03764 7.25315 7.28235 7.46659 8.11696 8.21722 8.61210 8.80717 8.81689 9.41345 10.88759 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.047840 B = 0.005888 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.142120 B = 4754.101989 C = 4988.678528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.202 4.202 3 C 0.249 3.751 4 N -0.749 5.749 5 C 0.722 3.278 6 O -0.597 6.597 7 N -0.627 5.627 8 C 0.100 3.900 9 C -0.120 4.120 10 C 0.219 3.781 11 O -0.559 6.559 12 C -0.553 4.553 13 H 0.082 0.918 14 C 0.075 3.925 15 N -0.888 5.888 16 Si 0.952 3.048 17 H -0.293 1.293 18 H -0.326 1.326 19 H -0.270 1.270 20 C 0.108 3.892 21 H 0.221 0.779 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.398 0.602 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.372 0.628 30 H 0.267 0.733 31 H 0.071 0.929 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.855 -7.630 3.840 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.202 4.202 3 C 0.126 3.874 4 N -0.406 5.406 5 C 0.424 3.576 6 O -0.476 6.476 7 N -0.364 5.364 8 C -0.023 4.023 9 C -0.158 4.158 10 C 0.179 3.821 11 O -0.367 6.367 12 C -0.590 4.590 13 H 0.100 0.900 14 C -0.130 4.130 15 N -0.522 5.522 16 Si 0.787 3.213 17 H -0.221 1.221 18 H -0.258 1.258 19 H -0.196 1.196 20 C -0.015 4.015 21 H 0.238 0.762 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.232 0.768 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.220 0.780 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.641 -7.917 3.895 17.094 hybrid contribution -0.483 0.703 0.519 0.999 sum -15.124 -7.214 4.414 17.328 Atomic orbital electron populations 1.24991 0.95899 0.98479 1.00403 1.23050 0.94360 1.01904 1.00900 1.17862 0.82500 0.88372 0.98697 1.45050 1.05879 1.25742 1.63913 1.15365 0.81807 0.81397 0.79079 1.90898 1.54822 1.46701 1.55140 1.47755 1.09322 1.20736 1.58601 1.22113 0.94347 0.89256 0.96546 1.22953 0.95051 0.97536 1.00262 1.20259 0.94141 0.86123 0.81614 1.86106 1.55092 1.68008 1.27505 1.21111 1.11972 0.99563 1.26364 0.90010 1.25109 0.94229 0.98642 0.95032 1.69971 1.19538 1.19685 1.43049 0.85640 0.80560 0.76301 0.78779 1.22057 1.25804 1.19615 1.23009 0.79131 0.98018 1.01312 0.76202 0.89262 0.89276 0.76796 0.92425 0.92666 0.90155 0.89536 0.78029 0.92383 0.91117 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 19.25 29.55 0.57 -0.95 16 2 C -0.20 -2.10 13.46 -37.12 -0.50 -2.60 16 3 C 0.25 2.94 6.15 -6.83 -0.04 2.90 16 4 N -0.75 -10.32 5.50 -68.11 -0.37 -10.69 16 5 C 0.72 12.95 8.49 -86.91 -0.74 12.21 16 6 O -0.60 -12.65 16.60 5.30 0.09 -12.56 16 7 N -0.63 -11.35 3.33 -176.02 -0.59 -11.94 16 8 C 0.10 1.60 6.17 -2.91 -0.02 1.58 16 9 C -0.12 -2.27 5.90 -24.89 -0.15 -2.42 16 10 C 0.22 4.75 0.70 -89.62 -0.06 4.69 16 11 O -0.56 -12.05 8.52 -35.23 -0.30 -12.35 16 12 C -0.55 -14.41 8.89 -34.44 -0.31 -14.71 16 13 H 0.08 2.32 8.00 -52.48 -0.42 1.90 16 14 C 0.08 2.05 5.46 -17.82 -0.10 1.96 16 15 N -0.89 -26.04 13.96 55.43 0.77 -25.26 16 16 Si 0.95 23.07 24.93 -169.99 -4.24 18.83 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.33 -8.14 7.11 56.52 0.40 -7.74 16 19 H -0.27 -6.37 5.42 56.52 0.31 -6.06 16 20 C 0.11 2.18 6.06 -2.53 -0.02 2.17 16 21 H 0.22 1.03 7.80 -54.08 -0.42 0.61 16 22 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.40 4.77 7.45 -40.82 -0.30 4.47 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.56 6.65 -51.93 -0.35 1.21 16 28 H 0.09 1.60 8.03 -51.93 -0.42 1.19 16 29 H 0.37 7.21 8.99 45.56 0.41 7.62 16 30 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.07 1.46 7.98 -51.93 -0.41 1.04 16 32 H 0.07 1.46 8.02 -51.93 -0.42 1.05 16 LS Contribution 276.80 15.07 4.17 4.17 Total: -1.00 -32.21 276.80 -5.07 -37.28 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -3.25 Total: 7.70 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -1.36 Total: 4.81 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.19 Total: -47.89 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.21 Total: -24.91 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.24 Total: 18.83 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.21 -5.07 -37.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825590883.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.152 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds