Wall clock time and date at job start Sun Mar 29 2020 23:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46928 * 150.53037 * 3 2 1 5 5 C 1.34783 * 119.99774 * 179.97438 * 4 3 2 6 6 O 1.21577 * 120.00173 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99641 * 179.97438 * 5 4 3 8 8 C 1.47287 * 125.79198 * 0.02562 * 7 5 4 9 9 C 1.54330 * 107.30552 * 178.92375 * 8 7 5 10 10 C 1.55159 * 102.93676 * 337.81553 * 9 8 7 11 11 O 1.42900 * 111.00319 * 277.42620 * 10 9 8 12 12 C 1.50706 * 111.03480 * 153.59504 * 10 9 8 13 13 H 1.08003 * 119.99190 * 272.60470 * 12 10 9 14 14 C 1.37874 * 120.00309 * 92.60308 * 12 10 9 15 15 N 1.31513 * 119.99912 * 173.51706 * 14 12 10 16 16 Si 1.86802 * 119.99829 * 353.52492 * 14 12 10 17 17 H 1.48498 * 109.47427 * 87.32266 * 16 14 12 18 18 H 1.48507 * 109.46836 * 207.31973 * 16 14 12 19 19 H 1.48497 * 109.47044 * 327.31373 * 16 14 12 20 20 C 1.47418 * 125.64608 * 180.02562 * 7 5 4 21 21 H 4.40645 * 5.51481 * 180.02562 * 4 1 2 22 22 H 1.08999 * 109.47686 * 30.53213 * 3 2 1 23 23 H 1.09004 * 109.46977 * 270.52795 * 3 2 1 24 24 H 0.97000 * 119.99638 * 0.02562 * 4 3 2 25 25 H 1.09000 * 109.86295 * 59.49673 * 8 7 5 26 26 H 1.08999 * 110.00297 * 298.42830 * 8 7 5 27 27 H 1.08998 * 110.72012 * 219.45160 * 9 8 7 28 28 H 1.09000 * 110.71703 * 96.17766 * 9 8 7 29 29 H 0.96698 * 113.99873 * 168.40548 * 11 10 9 30 30 H 0.97006 * 119.99842 * 179.97438 * 15 14 12 31 31 H 1.09002 * 110.36788 * 85.26770 * 20 7 5 32 32 H 1.08998 * 110.36891 * 323.05317 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2035 -0.6795 5 6 4.4588 1.4187 -0.8002 6 8 5.2492 0.6146 -0.3456 7 7 4.9075 2.5250 -1.4258 8 6 4.0677 3.5780 -2.0218 9 6 5.0162 4.6512 -2.5967 10 6 6.3251 4.4232 -1.7953 11 8 6.2686 5.0765 -0.5256 12 6 7.5271 4.8797 -2.5813 13 1 8.0123 4.2019 -3.2681 14 6 8.0074 6.1625 -2.4238 15 7 9.1283 6.5216 -3.0104 16 14 7.0660 7.3902 -1.3769 17 1 7.4919 7.2619 0.0399 18 1 7.3477 8.7675 -1.8556 19 1 5.6102 7.1174 -1.4830 20 6 6.3231 2.8832 -1.6280 21 1 -1.0502 -0.0002 0.0003 22 1 3.0098 -0.8843 -0.5220 23 1 3.0093 -0.0086 1.0277 24 1 2.5031 1.8452 -1.0419 25 1 3.4288 4.0194 -1.2569 26 1 3.4548 3.1591 -2.8199 27 1 4.6221 5.6511 -2.4155 28 1 5.1826 4.4882 -3.6615 29 1 6.9784 4.8219 0.0797 30 1 9.4660 7.4242 -2.8998 31 1 6.7113 2.4035 -2.5265 32 1 6.9151 2.5952 -0.7592 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825590883.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:10 Heat of formation + Delta-G solvation = -38.758214 kcal Electronic energy + Delta-G solvation = -16941.838956 eV Core-core repulsion = 14096.415399 eV Total energy + Delta-G solvation = -2845.423556 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.37529 -39.45387 -36.52650 -36.31265 -34.44787 -33.54798 -31.84817 -29.98856 -28.32395 -26.49419 -24.02428 -21.57562 -21.21248 -20.06516 -19.30517 -18.53277 -17.34191 -17.16266 -16.91060 -16.59083 -15.83541 -15.58694 -15.25153 -14.57078 -14.49751 -14.41317 -13.99475 -13.70884 -13.30798 -13.17042 -12.74307 -12.31124 -12.20898 -11.94791 -11.82309 -11.46994 -11.31060 -11.20596 -10.63198 -10.40827 -10.25307 -9.45558 -8.32841 -6.46671 1.20970 1.52363 1.54689 1.75836 1.82410 2.07136 2.09177 2.47123 2.98264 3.09615 3.35856 3.50214 3.83887 4.07426 4.26755 4.42426 4.51215 4.52135 4.60905 4.84169 4.94990 5.00414 5.15856 5.21645 5.33298 5.38256 5.54421 6.03770 6.06498 6.57894 6.59467 6.88697 6.95547 7.31375 7.45677 8.80182 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.047840 B = 0.005888 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.142120 B = 4754.101989 C = 4988.678528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.249 4.249 3 C 0.250 3.750 4 N -0.731 5.731 5 C 0.719 3.281 6 O -0.635 6.635 7 N -0.630 5.630 8 C 0.107 3.893 9 C -0.118 4.118 10 C 0.217 3.783 11 O -0.559 6.559 12 C -0.549 4.549 13 H 0.045 0.955 14 C 0.026 3.974 15 N -0.937 5.937 16 Si 1.010 2.990 17 H -0.287 1.287 18 H -0.337 1.337 19 H -0.254 1.254 20 C 0.117 3.883 21 H 0.258 0.742 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.410 0.590 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.380 0.620 30 H 0.267 0.733 31 H 0.059 0.941 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.343 -7.770 4.660 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.249 4.249 3 C 0.127 3.873 4 N -0.388 5.388 5 C 0.421 3.579 6 O -0.517 6.517 7 N -0.367 5.367 8 C -0.015 4.015 9 C -0.156 4.156 10 C 0.176 3.824 11 O -0.368 6.368 12 C -0.587 4.587 13 H 0.063 0.937 14 C -0.174 4.174 15 N -0.575 5.575 16 Si 0.844 3.156 17 H -0.215 1.215 18 H -0.270 1.270 19 H -0.179 1.179 20 C -0.007 4.007 21 H 0.274 0.726 22 H 0.104 0.896 23 H 0.102 0.898 24 H 0.246 0.754 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.229 0.771 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.193 -8.072 4.719 20.456 hybrid contribution 0.569 0.645 0.238 0.893 sum -17.624 -7.427 4.957 19.757 Atomic orbital electron populations 1.25872 0.96582 0.95708 0.97717 1.22905 0.94299 1.04396 1.03342 1.17811 0.83964 0.87335 0.98142 1.44934 1.04377 1.26427 1.63056 1.15494 0.82824 0.80837 0.78782 1.90871 1.56219 1.47939 1.56688 1.47670 1.08507 1.21473 1.59026 1.22190 0.93525 0.87837 0.97947 1.22865 0.93945 0.98860 0.99964 1.20140 0.93923 0.86905 0.81453 1.86063 1.55419 1.68056 1.27259 1.21353 1.13062 0.98691 1.25586 0.93664 1.25860 0.94783 1.00463 0.96275 1.70090 1.21585 1.20209 1.45618 0.84677 0.80109 0.73538 0.77265 1.21459 1.26997 1.17916 1.22651 0.80795 0.96889 1.00395 0.72617 0.89573 0.89763 0.75421 0.90438 0.89251 0.90006 0.89540 0.77108 0.92407 0.92244 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 19.25 74.32 1.43 -0.39 16 2 C -0.25 -4.53 13.46 31.12 0.42 -4.11 16 3 C 0.25 5.55 6.15 84.57 0.52 6.07 16 4 N -0.73 -18.50 5.50 -487.68 -2.68 -21.19 16 5 C 0.72 24.73 8.49 179.05 1.52 26.25 16 6 O -0.64 -26.76 16.60 -3.96 -0.07 -26.82 16 7 N -0.63 -21.62 3.33 -829.08 -2.76 -24.39 16 8 C 0.11 3.02 6.17 86.68 0.54 3.56 16 9 C -0.12 -4.20 5.90 31.79 0.19 -4.01 16 10 C 0.22 9.19 0.70 -10.14 -0.01 9.18 16 11 O -0.56 -22.99 8.52 -148.98 -1.27 -24.26 16 12 C -0.55 -29.08 8.89 25.60 0.23 -28.86 16 13 H 0.05 2.67 8.00 -2.91 -0.02 2.65 16 14 C 0.03 1.44 5.46 84.65 0.46 1.90 16 15 N -0.94 -56.47 13.96 21.45 0.30 -56.17 16 16 Si 1.01 47.09 24.93 68.60 1.71 48.80 16 17 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 18 H -0.34 -16.26 7.11 99.48 0.71 -15.55 16 19 H -0.25 -11.06 5.42 99.48 0.54 -10.52 16 20 C 0.12 4.68 6.06 86.86 0.53 5.20 16 21 H 0.26 1.02 7.80 -4.41 -0.03 0.98 16 22 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 24 H 0.41 8.42 7.45 -92.71 -0.69 7.73 16 25 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.08 2.90 6.65 -2.39 -0.02 2.89 16 28 H 0.09 3.05 8.03 -2.39 -0.02 3.03 16 29 H 0.38 14.21 8.99 -74.06 -0.67 13.54 16 30 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 31 H 0.06 2.50 7.98 -2.39 -0.02 2.48 16 32 H 0.06 2.52 8.02 -2.39 -0.02 2.50 16 Total: -1.00 -70.34 276.80 0.67 -69.67 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.38 Total: 19.56 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 5.82 Total: 14.80 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -5.15 Total: -101.74 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -1.33 Total: -51.08 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.71 Total: 48.80 kcal Total: -70.34 0.67 -69.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825590883.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.911 kcal (2) G-P(sol) polarization free energy of solvation -70.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds