Wall clock time and date at job start Sun Mar 29 2020 22:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46954 * 2 1 4 4 H 1.09004 * 109.47303 * 55.00154 * 3 2 1 5 5 C 1.50706 * 109.46980 * 174.99592 * 3 2 1 6 6 H 1.07995 * 119.99514 * 120.00314 * 5 3 2 7 7 C 1.37876 * 120.00226 * 300.00462 * 5 3 2 8 8 N 1.31514 * 119.99938 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99943 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47105 * 90.00138 * 9 7 5 11 11 H 1.48501 * 109.47075 * 209.99943 * 9 7 5 12 12 H 1.48496 * 109.47114 * 329.99799 * 9 7 5 13 13 O 1.45196 * 109.47482 * 294.99829 * 3 2 1 14 14 C 1.34735 * 116.99802 * 90.00060 * 13 3 2 15 15 O 1.21494 * 120.00079 * 359.72908 * 14 13 3 16 16 C 1.47579 * 119.99812 * 179.97438 * 14 13 3 17 17 C 1.41551 * 126.52379 * 179.71253 * 16 14 13 18 18 C 1.35348 * 105.49894 * 179.84574 * 17 16 14 19 19 N 1.35042 * 107.24514 * 0.41526 * 18 17 16 20 20 C 1.46503 * 124.88310 * 179.68788 * 19 18 17 21 21 N 1.28467 * 110.23956 * 359.72471 * 19 18 17 22 22 H 1.09000 * 109.47198 * 299.99629 * 1 2 3 23 23 H 1.09007 * 109.47110 * 59.99622 * 1 2 3 24 24 H 1.08997 * 109.47267 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46896 * 239.99659 * 2 1 3 26 26 H 1.09001 * 109.46718 * 120.00158 * 2 1 3 27 27 H 0.97005 * 120.00149 * 179.97438 * 8 7 5 28 28 H 1.07994 * 127.24666 * 0.02562 * 17 16 14 29 29 H 1.08002 * 126.37780 * 180.11890 * 18 17 16 30 30 H 1.09002 * 109.47104 * 270.01803 * 20 19 18 31 31 H 1.08998 * 109.46804 * 30.01614 * 20 19 18 32 32 H 1.08998 * 109.47251 * 150.01560 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8783 1.2281 8 7 3.4061 0.3373 2.1733 9 14 6.0049 0.8800 1.3812 10 1 6.4427 2.1128 2.0838 11 1 6.4390 -0.3111 2.1546 12 1 6.6131 0.8395 0.0271 13 8 1.6559 2.0917 -1.2407 14 6 0.4683 2.7278 -1.2560 15 8 -0.2295 2.7356 -0.2615 16 6 0.0127 3.4106 -2.4824 17 6 -1.2049 4.1118 -2.6534 18 6 -1.1846 4.5663 -3.9282 19 7 -0.0261 4.1499 -4.4832 20 6 0.3887 4.4236 -5.8614 21 7 0.6598 3.4786 -3.6293 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8292 -0.0612 2.9500 28 1 -1.9844 4.2565 -1.9202 29 1 -1.9540 5.1490 -4.4128 30 1 0.0316 3.6264 -6.5134 31 1 -0.0336 5.3747 -6.1858 32 1 1.4764 4.4734 -5.9105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:54 Heat of formation + Delta-G solvation = -9.124741 kcal Electronic energy + Delta-G solvation = -16855.786784 eV Core-core repulsion = 14011.648231 eV Total energy + Delta-G solvation = -2844.138553 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.48863 -39.20115 -35.65306 -33.53620 -33.25032 -31.27200 -30.64560 -27.84081 -26.97038 -23.74693 -22.67670 -21.33842 -20.28772 -19.24295 -17.58658 -16.56962 -16.43503 -16.21719 -15.25986 -14.98245 -14.41179 -13.89102 -13.28970 -13.08743 -12.84990 -12.74149 -12.65300 -11.96716 -11.38663 -11.25212 -11.10936 -10.88659 -10.71131 -10.57762 -10.21236 -9.78600 -9.62751 -9.29130 -9.16152 -8.97393 -8.70893 -8.37880 -6.11221 -4.17332 1.80383 2.23006 2.49495 3.29792 3.34861 3.39506 3.76233 3.82677 4.36898 4.45100 4.77971 4.89716 5.11689 5.20323 5.21398 5.62064 5.80227 5.95277 6.31905 6.39056 6.48177 6.57980 6.79855 6.96819 7.05312 7.25976 7.32527 7.69273 7.81964 7.95358 8.06961 8.24086 8.74245 8.99470 9.47265 10.95777 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032168 B = 0.006329 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.227885 B = 4422.851568 C = 4978.174394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.220 3.780 4 H 0.048 0.952 5 C -0.518 4.518 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.340 6.340 14 C 0.541 3.459 15 O -0.508 6.508 16 C 0.008 3.992 17 C -0.179 4.179 18 C -0.027 4.027 19 N -0.291 5.291 20 C 0.088 3.912 21 N -0.235 5.235 22 H 0.054 0.946 23 H 0.032 0.968 24 H 0.033 0.967 25 H 0.042 0.958 26 H 0.109 0.891 27 H 0.265 0.735 28 H 0.163 0.837 29 H 0.181 0.819 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.829 7.155 -13.665 17.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.167 3.833 4 H 0.066 0.934 5 C -0.556 4.556 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.254 6.254 14 C 0.383 3.617 15 O -0.396 6.396 16 C -0.151 4.151 17 C -0.207 4.207 18 C -0.169 4.169 19 N -0.080 5.080 20 C -0.052 4.052 21 N -0.072 5.072 22 H 0.073 0.927 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.127 0.873 27 H 0.075 0.925 28 H 0.181 0.819 29 H 0.199 0.801 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.946 6.707 -13.802 16.844 hybrid contribution 0.069 0.221 0.514 0.564 sum -6.877 6.927 -13.288 16.488 Atomic orbital electron populations 1.21868 0.98375 0.98991 1.00830 1.22015 0.92664 0.99304 1.03350 1.20734 0.95092 0.88844 0.78613 0.93398 1.21055 0.89682 1.38692 1.06173 0.91288 1.24873 0.99167 0.94826 0.95080 1.69896 1.35300 1.38026 1.09472 0.86286 0.84016 0.77616 0.78300 1.20449 1.20983 1.19620 1.86626 1.33130 1.61891 1.43785 1.19480 0.81052 0.76227 0.84965 1.90795 1.55819 1.59052 1.33982 1.21272 0.95517 1.05864 0.92444 1.21787 0.99011 1.03022 0.96837 1.22806 0.92560 1.06403 0.95168 1.45546 1.13696 1.37309 1.11478 1.22139 1.03725 1.02722 0.76619 1.73814 1.21704 1.12229 0.99415 0.92740 0.94909 0.94827 0.93950 0.87293 0.92458 0.81899 0.80138 0.89803 0.88784 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.56 37.16 0.32 -2.99 16 2 C -0.14 -3.52 5.49 -26.73 -0.15 -3.67 16 3 C 0.22 6.14 2.25 -27.88 -0.06 6.07 16 4 H 0.05 1.46 7.16 -51.93 -0.37 1.09 16 5 C -0.52 -15.07 8.90 -34.44 -0.31 -15.38 16 6 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 7 C 0.06 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -25.64 11.29 55.43 0.63 -25.01 16 9 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 O -0.34 -8.88 9.82 -40.59 -0.40 -9.28 16 14 C 0.54 12.73 6.43 34.54 0.22 12.95 16 15 O -0.51 -12.58 14.09 -19.26 -0.27 -12.85 16 16 C 0.01 0.15 7.17 -82.78 -0.59 -0.44 16 17 C -0.18 -2.70 10.81 -39.35 -0.43 -3.13 16 18 C -0.03 -0.31 11.45 -17.17 -0.20 -0.51 16 19 N -0.29 -3.72 3.70 -68.13 -0.25 -3.97 16 20 C 0.09 0.61 11.31 59.85 0.68 1.29 16 21 N -0.23 -4.23 11.99 33.41 0.40 -3.83 16 22 H 0.05 1.30 7.79 -51.93 -0.40 0.89 16 23 H 0.03 0.74 6.05 -51.93 -0.31 0.43 16 24 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.11 3.02 5.95 -51.93 -0.31 2.71 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.34 8.13 -51.93 -0.42 -0.09 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 279.28 15.07 4.21 4.21 Total: -1.00 -34.16 279.28 -5.22 -39.38 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -3.90 Total: -1.08 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -0.61 Total: -4.14 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.77 Total: -32.81 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.67 Total: -22.13 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -34.16 -5.22 -39.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.254 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds