Wall clock time and date at job start Sun Mar 29 2020 22:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46954 * 2 1 4 4 H 1.09004 * 109.47303 * 55.00154 * 3 2 1 5 5 C 1.50706 * 109.46980 * 174.99592 * 3 2 1 6 6 H 1.07995 * 119.99514 * 120.00314 * 5 3 2 7 7 C 1.37876 * 120.00226 * 300.00462 * 5 3 2 8 8 N 1.31514 * 119.99938 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99943 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47105 * 90.00138 * 9 7 5 11 11 H 1.48501 * 109.47075 * 209.99943 * 9 7 5 12 12 H 1.48496 * 109.47114 * 329.99799 * 9 7 5 13 13 O 1.45196 * 109.47482 * 294.99829 * 3 2 1 14 14 C 1.34735 * 116.99802 * 90.00060 * 13 3 2 15 15 O 1.21494 * 120.00079 * 359.72908 * 14 13 3 16 16 C 1.47579 * 119.99812 * 179.97438 * 14 13 3 17 17 C 1.41551 * 126.52379 * 179.71253 * 16 14 13 18 18 C 1.35348 * 105.49894 * 179.84574 * 17 16 14 19 19 N 1.35042 * 107.24514 * 0.41526 * 18 17 16 20 20 C 1.46503 * 124.88310 * 179.68788 * 19 18 17 21 21 N 1.28467 * 110.23956 * 359.72471 * 19 18 17 22 22 H 1.09000 * 109.47198 * 299.99629 * 1 2 3 23 23 H 1.09007 * 109.47110 * 59.99622 * 1 2 3 24 24 H 1.08997 * 109.47267 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46896 * 239.99659 * 2 1 3 26 26 H 1.09001 * 109.46718 * 120.00158 * 2 1 3 27 27 H 0.97005 * 120.00149 * 179.97438 * 8 7 5 28 28 H 1.07994 * 127.24666 * 0.02562 * 17 16 14 29 29 H 1.08002 * 126.37780 * 180.11890 * 18 17 16 30 30 H 1.09002 * 109.47104 * 270.01803 * 20 19 18 31 31 H 1.08998 * 109.46804 * 30.01614 * 20 19 18 32 32 H 1.08998 * 109.47251 * 150.01560 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8783 1.2281 8 7 3.4061 0.3373 2.1733 9 14 6.0049 0.8800 1.3812 10 1 6.4427 2.1128 2.0838 11 1 6.4390 -0.3111 2.1546 12 1 6.6131 0.8395 0.0271 13 8 1.6559 2.0917 -1.2407 14 6 0.4683 2.7278 -1.2560 15 8 -0.2295 2.7356 -0.2615 16 6 0.0127 3.4106 -2.4824 17 6 -1.2049 4.1118 -2.6534 18 6 -1.1846 4.5663 -3.9282 19 7 -0.0261 4.1499 -4.4832 20 6 0.3887 4.4236 -5.8614 21 7 0.6598 3.4786 -3.6293 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8292 -0.0612 2.9500 28 1 -1.9844 4.2565 -1.9202 29 1 -1.9540 5.1490 -4.4128 30 1 0.0316 3.6264 -6.5134 31 1 -0.0336 5.3747 -6.1858 32 1 1.4764 4.4734 -5.9105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:54 Heat of formation + Delta-G solvation = -32.126079 kcal Electronic energy + Delta-G solvation = -16856.784197 eV Core-core repulsion = 14011.648231 eV Total energy + Delta-G solvation = -2845.135965 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.62101 -41.10665 -37.62133 -35.51766 -34.40498 -33.33764 -31.77430 -29.52207 -28.42987 -25.52950 -24.40186 -22.40897 -22.12112 -21.00670 -19.08323 -18.43618 -18.08497 -17.45080 -17.02597 -16.67269 -16.31049 -14.95029 -14.86619 -14.74577 -14.25225 -14.02779 -13.52508 -13.41782 -13.34900 -13.26968 -13.12521 -12.81490 -12.57800 -12.14205 -11.92485 -11.79503 -11.59148 -11.40601 -10.83494 -10.54650 -10.29081 -10.08032 -8.27844 -6.44792 0.36106 1.17609 1.39970 1.42970 1.51399 1.57085 2.14058 2.19025 2.43988 3.01171 3.42817 3.97261 4.10749 4.35505 4.38185 4.43627 4.47988 4.55331 4.70658 4.70850 4.75367 4.82728 5.06327 5.20444 5.25228 5.36816 5.49597 5.64672 5.90188 5.93854 6.08616 6.57297 6.77991 7.05410 7.26537 8.79442 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032168 B = 0.006329 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.227885 B = 4422.851568 C = 4978.174394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.128 4.128 3 C 0.222 3.778 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.061 0.939 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.983 3.017 10 H -0.271 1.271 11 H -0.271 1.271 12 H -0.266 1.266 13 O -0.355 6.355 14 C 0.534 3.466 15 O -0.533 6.533 16 C -0.039 4.039 17 C -0.198 4.198 18 C 0.010 3.990 19 N -0.277 5.277 20 C 0.074 3.926 21 N -0.271 5.271 22 H 0.040 0.960 23 H 0.030 0.970 24 H 0.064 0.936 25 H 0.042 0.958 26 H 0.091 0.909 27 H 0.272 0.728 28 H 0.171 0.829 29 H 0.244 0.756 30 H 0.104 0.896 31 H 0.140 0.860 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.268 8.138 -15.956 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.027 0.973 5 C -0.590 4.590 6 H 0.079 0.921 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.806 3.194 10 H -0.196 1.196 11 H -0.196 1.196 12 H -0.190 1.190 13 O -0.270 6.270 14 C 0.379 3.621 15 O -0.423 6.423 16 C -0.194 4.194 17 C -0.225 4.225 18 C -0.132 4.132 19 N -0.067 5.067 20 C -0.064 4.064 21 N -0.110 5.110 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.189 0.811 29 H 0.260 0.740 30 H 0.122 0.878 31 H 0.158 0.842 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.397 7.692 -16.108 19.322 hybrid contribution 0.123 0.013 1.079 1.086 sum -7.274 7.705 -15.030 18.389 Atomic orbital electron populations 1.21713 0.96216 1.00725 1.00029 1.21861 0.94557 0.97876 1.02324 1.20487 0.94771 0.89464 0.78347 0.97251 1.21294 0.90375 1.40273 1.07024 0.92112 1.25802 1.04409 0.93690 0.94162 1.70007 1.37481 1.37768 1.09793 0.85189 0.77442 0.78207 0.78598 1.19643 1.19564 1.19026 1.86610 1.35050 1.62714 1.42675 1.20212 0.79797 0.75619 0.86512 1.90749 1.56064 1.60050 1.35415 1.20983 0.98032 1.08646 0.91768 1.22067 0.97860 1.03489 0.99112 1.23620 0.92329 1.03900 0.93392 1.46149 1.13451 1.34717 1.12404 1.22713 1.04153 1.05854 0.73695 1.73708 1.23283 1.14159 0.99876 0.94132 0.95070 0.91657 0.93895 0.89073 0.91872 0.81148 0.74010 0.87772 0.84200 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.14 8.56 71.98 0.62 -5.52 16 2 C -0.13 -6.93 5.49 30.59 0.17 -6.76 16 3 C 0.22 13.13 2.25 29.85 0.07 13.20 16 4 H 0.01 0.63 7.16 -2.39 -0.02 0.61 16 5 C -0.55 -33.44 8.90 25.60 0.23 -33.22 16 6 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -53.84 11.29 21.45 0.24 -53.60 16 9 Si 0.98 44.59 29.54 68.60 2.03 46.62 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 13 O -0.36 -19.66 9.82 -56.45 -0.55 -20.21 16 14 C 0.53 26.52 6.43 70.29 0.45 26.97 16 15 O -0.53 -27.95 14.09 19.86 0.28 -27.67 16 16 C -0.04 -1.55 7.17 42.42 0.30 -1.24 16 17 C -0.20 -5.71 10.81 22.42 0.24 -5.47 16 18 C 0.01 0.19 11.45 83.53 0.96 1.15 16 19 N -0.28 -6.25 3.70 -369.45 -1.37 -7.62 16 20 C 0.07 0.72 11.31 127.77 1.44 2.16 16 21 N -0.27 -9.66 11.99 -48.22 -0.58 -10.24 16 22 H 0.04 2.00 7.79 -2.39 -0.02 1.98 16 23 H 0.03 1.45 6.05 -2.38 -0.01 1.44 16 24 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.09 5.25 5.95 -2.39 -0.01 5.23 16 27 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 28 H 0.17 4.46 8.06 -2.91 -0.02 4.43 16 29 H 0.24 1.35 8.06 -2.91 -0.02 1.32 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.14 0.14 8.13 -2.39 -0.02 0.12 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -79.76 279.28 6.10 -73.67 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.12 Total: 6.23 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 4.93 Total: -7.18 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -1.70 Total: -71.46 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -0.27 Total: -47.88 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -79.76 6.10 -73.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.542 kcal (2) G-P(sol) polarization free energy of solvation -79.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds