Wall clock time and date at job start Sun Mar 29 2020 21:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47170 * 2 1 4 4 O 1.42905 * 109.47075 * 240.00359 * 2 1 3 5 5 C 1.53005 * 109.47173 * 120.00862 * 2 1 3 6 6 O 1.42898 * 109.47096 * 54.99521 * 5 2 1 7 7 C 1.35896 * 116.99435 * 180.02562 * 6 5 2 8 8 C 1.38827 * 120.02371 * 0.02562 * 7 6 5 9 9 C 1.38189 * 120.07970 * 179.74213 * 8 7 6 10 10 C 1.38150 * 120.12814 * 0.26171 * 9 8 7 11 11 C 1.38896 * 120.03743 * 359.97438 * 10 9 8 12 12 O 1.35750 * 120.04371 * 180.02562 * 11 10 9 13 13 C 1.34834 * 117.00669 * 174.46733 * 12 11 10 14 14 H 1.07999 * 119.99389 * 5.06001 * 13 12 11 15 15 C 1.38644 * 120.00140 * 185.06143 * 13 12 11 16 16 N 1.31562 * 119.99922 * 180.02562 * 15 13 12 17 17 Si 1.86808 * 120.00328 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46747 * 90.00001 * 17 15 13 19 19 H 1.48493 * 109.47150 * 210.00100 * 17 15 13 20 20 H 1.48497 * 109.46595 * 330.00088 * 17 15 13 21 21 C 1.38580 * 120.01785 * 180.25709 * 7 6 5 22 22 H 1.09004 * 109.47047 * 299.99080 * 1 2 3 23 23 H 1.08997 * 109.47223 * 59.99638 * 1 2 3 24 24 H 1.09004 * 109.46750 * 179.97438 * 1 2 3 25 25 H 0.96704 * 113.99744 * 59.99823 * 4 2 1 26 26 H 1.09004 * 109.46468 * 294.99757 * 5 2 1 27 27 H 1.08997 * 109.46976 * 174.99947 * 5 2 1 28 28 H 1.07992 * 119.95806 * 0.02689 * 8 7 6 29 29 H 1.08004 * 119.93592 * 180.27629 * 9 8 7 30 30 H 1.07994 * 119.98454 * 180.02562 * 10 9 8 31 31 H 0.96997 * 120.00107 * 179.97438 * 16 15 13 32 32 H 1.07995 * 120.06310 * 0.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.0401 -0.7215 1.2492 6 8 1.4702 -2.0305 1.3092 7 6 1.8226 -2.8088 2.3660 8 6 2.6991 -2.3214 3.3259 9 6 3.0542 -3.1099 4.4038 10 6 2.5425 -4.3872 4.5269 11 6 1.6690 -4.8818 3.5670 12 8 1.1658 -6.1368 3.6881 13 6 0.2368 -6.5136 2.7864 14 1 -0.0152 -5.8591 1.9652 15 6 -0.3949 -7.7412 2.9136 16 7 -1.3010 -8.1090 2.0336 17 14 0.0414 -8.8736 4.3338 18 1 -0.8413 -8.5789 5.4910 19 1 -0.1452 -10.2862 3.9159 20 1 1.4577 -8.6556 4.7234 21 6 1.3111 -4.0913 2.4836 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7210 -0.2700 -1.9980 26 1 1.7517 -0.1585 2.1369 27 1 3.1263 -0.7997 1.2055 28 1 3.1004 -1.3231 3.2326 29 1 3.7327 -2.7267 5.1516 30 1 2.8212 -5.0013 5.3705 31 1 -1.7428 -8.9680 2.1223 32 1 0.6323 -4.4737 1.7356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840779254.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:52 Heat of formation + Delta-G solvation = -91.758449 kcal Electronic energy + Delta-G solvation = -16490.943304 eV Core-core repulsion = 13610.928734 eV Total energy + Delta-G solvation = -2880.014570 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73890 -38.47322 -37.13313 -35.58933 -32.35052 -31.64379 -29.60408 -28.78786 -26.78584 -25.22157 -22.12461 -21.88455 -20.42423 -18.30794 -17.87955 -17.28940 -15.85954 -15.58445 -15.25804 -15.24613 -14.39524 -14.21638 -13.82234 -13.61489 -13.26979 -13.00045 -12.44527 -12.22853 -12.07242 -11.84613 -11.66423 -11.08362 -10.99019 -10.90023 -10.50164 -10.33021 -10.22162 -10.11670 -9.42349 -8.85124 -7.73970 -7.36329 -6.39246 -4.06745 2.16074 2.26012 3.23801 3.27223 3.42132 3.54710 4.07794 4.25635 4.50363 4.71141 4.85916 4.88314 5.09978 5.12541 5.30028 5.47287 5.54994 5.66896 5.70503 5.76399 6.01607 6.21772 6.24206 6.31362 6.61174 6.98609 7.12284 7.15056 7.44378 7.54489 7.82862 7.96814 8.09783 8.95383 9.56035 10.68191 Molecular weight = 238.10amu Principal moments of inertia in cm(-1) A = 0.029827 B = 0.005966 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.510154 B = 4691.761484 C = 5451.237817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.105 3.895 3 H 0.070 0.930 4 O -0.558 6.558 5 C 0.068 3.932 6 O -0.306 6.306 7 C 0.167 3.833 8 C -0.292 4.292 9 C -0.045 4.045 10 C -0.223 4.223 11 C 0.190 3.810 12 O -0.211 6.211 13 C -0.390 4.390 14 H 0.109 0.891 15 C 0.064 3.936 16 N -0.877 5.877 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.259 1.259 21 C -0.252 4.252 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.376 0.624 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.280 0.720 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.423 15.148 -0.971 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.046 3.954 3 H 0.087 0.913 4 O -0.363 6.363 5 C -0.008 4.008 6 O -0.219 6.219 7 C 0.122 3.878 8 C -0.311 4.311 9 C -0.063 4.063 10 C -0.242 4.242 11 C 0.137 3.863 12 O -0.116 6.116 13 C -0.466 4.466 14 H 0.126 0.874 15 C -0.139 4.139 16 N -0.515 5.515 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.183 1.183 21 C -0.272 4.272 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.223 0.777 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.090 0.910 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.441 14.342 -0.598 15.351 hybrid contribution -0.145 0.066 0.121 0.200 sum 5.296 14.408 -0.477 15.358 Atomic orbital electron populations 1.22447 0.95652 1.04243 1.01999 1.21868 0.94017 0.94143 0.85392 0.91273 1.86655 1.76513 1.57586 1.15592 1.22704 0.98413 0.83277 0.96425 1.86097 1.66854 1.25320 1.43643 1.18694 0.93018 0.90238 0.85874 1.20702 1.08732 1.01736 0.99948 1.20394 0.97035 0.92825 0.96079 1.20139 1.05406 0.97268 1.01384 1.18757 0.91497 0.84137 0.91905 1.83590 1.51481 1.24662 1.51830 1.20825 1.15177 1.04484 1.06108 0.87405 1.24475 0.94678 0.96718 0.98059 1.69654 1.24449 1.22428 1.34978 0.86183 0.80303 0.78941 0.81494 1.19853 1.20750 1.18306 1.20430 1.10326 0.93252 1.03214 0.91649 0.92493 0.90327 0.77734 0.90983 0.91634 0.87012 0.86609 0.86391 0.91032 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 9.34 37.16 0.35 -1.65 16 2 C 0.10 1.16 3.99 -26.73 -0.11 1.05 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 O -0.56 -6.98 13.29 -40.08 -0.53 -7.51 16 5 C 0.07 0.92 4.61 37.16 0.17 1.09 16 6 O -0.31 -5.68 9.22 -24.26 -0.22 -5.90 16 7 C 0.17 3.39 6.68 -39.24 -0.26 3.12 16 8 C -0.29 -5.15 9.04 -39.38 -0.36 -5.51 16 9 C -0.04 -0.79 10.03 -39.63 -0.40 -1.18 16 10 C -0.22 -4.54 9.99 -39.37 -0.39 -4.93 16 11 C 0.19 4.57 6.65 -39.13 -0.26 4.31 16 12 O -0.21 -5.71 8.58 0.04 0.00 -5.71 16 13 C -0.39 -11.30 9.95 30.88 0.31 -10.99 16 14 H 0.11 3.23 5.43 -52.49 -0.29 2.95 16 15 C 0.06 1.83 5.49 -17.52 -0.10 1.73 16 16 N -0.88 -25.75 13.96 55.48 0.77 -24.97 16 17 Si 0.91 21.88 28.62 -169.99 -4.86 17.01 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 21 C -0.25 -5.92 9.10 -39.25 -0.36 -6.28 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 1.09 7.56 -51.93 -0.39 0.69 16 25 H 0.38 2.81 9.08 45.56 0.41 3.23 16 26 H 0.07 0.83 7.66 -51.93 -0.40 0.43 16 27 H 0.07 0.87 7.66 -51.93 -0.40 0.47 16 28 H 0.11 1.62 6.29 -52.49 -0.33 1.29 16 29 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.14 3.53 5.64 -52.49 -0.30 3.23 16 LS Contribution 278.03 15.07 4.19 4.19 Total: -1.00 -32.35 278.03 -4.99 -37.34 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -2.93 Total: 4.79 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -1.40 Total: -19.24 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.77 Total: -24.97 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.76 Total: -19.13 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.86 Total: 17.01 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.35 -4.99 -37.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840779254.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.416 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds