Wall clock time and date at job start Sun Mar 29 2020 21:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47170 * 2 1 4 4 O 1.42905 * 109.47075 * 240.00359 * 2 1 3 5 5 C 1.53005 * 109.47173 * 120.00862 * 2 1 3 6 6 O 1.42898 * 109.47096 * 54.99521 * 5 2 1 7 7 C 1.35896 * 116.99435 * 180.02562 * 6 5 2 8 8 C 1.38827 * 120.02371 * 0.02562 * 7 6 5 9 9 C 1.38189 * 120.07970 * 179.74213 * 8 7 6 10 10 C 1.38150 * 120.12814 * 0.26171 * 9 8 7 11 11 C 1.38896 * 120.03743 * 359.97438 * 10 9 8 12 12 O 1.35750 * 120.04371 * 180.02562 * 11 10 9 13 13 C 1.34834 * 117.00669 * 174.46733 * 12 11 10 14 14 H 1.07999 * 119.99389 * 5.06001 * 13 12 11 15 15 C 1.38644 * 120.00140 * 185.06143 * 13 12 11 16 16 N 1.31562 * 119.99922 * 180.02562 * 15 13 12 17 17 Si 1.86808 * 120.00328 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46747 * 90.00001 * 17 15 13 19 19 H 1.48493 * 109.47150 * 210.00100 * 17 15 13 20 20 H 1.48497 * 109.46595 * 330.00088 * 17 15 13 21 21 C 1.38580 * 120.01785 * 180.25709 * 7 6 5 22 22 H 1.09004 * 109.47047 * 299.99080 * 1 2 3 23 23 H 1.08997 * 109.47223 * 59.99638 * 1 2 3 24 24 H 1.09004 * 109.46750 * 179.97438 * 1 2 3 25 25 H 0.96704 * 113.99744 * 59.99823 * 4 2 1 26 26 H 1.09004 * 109.46468 * 294.99757 * 5 2 1 27 27 H 1.08997 * 109.46976 * 174.99947 * 5 2 1 28 28 H 1.07992 * 119.95806 * 0.02689 * 8 7 6 29 29 H 1.08004 * 119.93592 * 180.27629 * 9 8 7 30 30 H 1.07994 * 119.98454 * 180.02562 * 10 9 8 31 31 H 0.96997 * 120.00107 * 179.97438 * 16 15 13 32 32 H 1.07995 * 120.06310 * 0.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.0401 -0.7215 1.2492 6 8 1.4702 -2.0305 1.3092 7 6 1.8226 -2.8088 2.3660 8 6 2.6991 -2.3214 3.3259 9 6 3.0542 -3.1099 4.4038 10 6 2.5425 -4.3872 4.5269 11 6 1.6690 -4.8818 3.5670 12 8 1.1658 -6.1368 3.6881 13 6 0.2368 -6.5136 2.7864 14 1 -0.0152 -5.8591 1.9652 15 6 -0.3949 -7.7412 2.9136 16 7 -1.3010 -8.1090 2.0336 17 14 0.0414 -8.8736 4.3338 18 1 -0.8413 -8.5789 5.4910 19 1 -0.1452 -10.2862 3.9159 20 1 1.4577 -8.6556 4.7234 21 6 1.3111 -4.0913 2.4836 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7210 -0.2700 -1.9980 26 1 1.7517 -0.1585 2.1369 27 1 3.1263 -0.7997 1.2055 28 1 3.1004 -1.3231 3.2326 29 1 3.7327 -2.7267 5.1516 30 1 2.8212 -5.0013 5.3705 31 1 -1.7428 -8.9680 2.1223 32 1 0.6323 -4.4737 1.7356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840779254.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:52 Heat of formation + Delta-G solvation = -116.148711 kcal Electronic energy + Delta-G solvation = -16492.000946 eV Core-core repulsion = 13610.928734 eV Total energy + Delta-G solvation = -2881.072211 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.104 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.29540 -40.05340 -38.29644 -37.10349 -34.46370 -32.68216 -31.14562 -30.42677 -27.84592 -27.25248 -23.54266 -23.41278 -21.74360 -19.87303 -19.83911 -18.34488 -17.45788 -16.95155 -16.83385 -16.64989 -15.96947 -15.67003 -15.38245 -15.11098 -14.82587 -14.45315 -14.16246 -13.80661 -13.37954 -13.17027 -12.82603 -12.68189 -12.66104 -12.18024 -12.06454 -11.84987 -11.67089 -11.40294 -11.00784 -10.90723 -9.43747 -9.00346 -8.51984 -6.27054 0.54769 0.62772 1.31028 1.36503 1.52799 2.24290 2.29438 2.73939 3.02013 3.12504 3.27764 3.80080 3.99496 4.04505 4.21847 4.29250 4.35774 4.43082 4.54243 4.62707 4.76777 4.87283 4.89668 4.95703 5.31559 5.35285 5.41325 5.56561 5.73469 5.80034 6.07660 6.57257 6.80962 6.89806 7.51698 8.59966 Molecular weight = 238.10amu Principal moments of inertia in cm(-1) A = 0.029827 B = 0.005966 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.510154 B = 4691.761484 C = 5451.237817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.115 0.885 4 O -0.588 6.588 5 C 0.050 3.950 6 O -0.329 6.329 7 C 0.162 3.838 8 C -0.268 4.268 9 C -0.028 4.028 10 C -0.226 4.226 11 C 0.156 3.844 12 O -0.236 6.236 13 C -0.405 4.405 14 H 0.073 0.927 15 C 0.010 3.990 16 N -0.923 5.923 17 Si 0.977 3.023 18 H -0.262 1.262 19 H -0.265 1.265 20 H -0.260 1.260 21 C -0.283 4.283 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.035 0.965 25 H 0.395 0.605 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.158 0.842 29 H 0.171 0.829 30 H 0.136 0.864 31 H 0.286 0.714 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.668 17.833 0.865 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.046 3.954 3 H 0.132 0.868 4 O -0.397 6.397 5 C -0.024 4.024 6 O -0.243 6.243 7 C 0.116 3.884 8 C -0.287 4.287 9 C -0.045 4.045 10 C -0.245 4.245 11 C 0.106 3.894 12 O -0.142 6.142 13 C -0.481 4.481 14 H 0.091 0.909 15 C -0.189 4.189 16 N -0.564 5.564 17 Si 0.798 3.202 18 H -0.187 1.187 19 H -0.190 1.190 20 H -0.184 1.184 21 C -0.303 4.303 22 H 0.095 0.905 23 H 0.099 0.901 24 H 0.054 0.946 25 H 0.245 0.755 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.175 0.825 29 H 0.189 0.811 30 H 0.154 0.846 31 H 0.096 0.904 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.700 17.088 1.215 18.782 hybrid contribution -0.713 -0.370 -0.550 0.974 sum 6.987 16.718 0.665 18.131 Atomic orbital electron populations 1.22431 0.95982 1.01949 1.03818 1.22064 0.93757 0.95565 0.84003 0.86782 1.86597 1.76975 1.59014 1.17136 1.23261 0.98921 0.81152 0.99103 1.86105 1.67499 1.27606 1.43074 1.18790 0.93100 0.89353 0.87116 1.21259 1.05968 1.03403 0.98075 1.21025 0.95987 0.90986 0.96529 1.20535 1.04325 0.98873 1.00816 1.19358 0.92908 0.83722 0.93430 1.83525 1.52284 1.26664 1.51775 1.20690 1.16508 1.04717 1.06189 0.90912 1.25377 0.94458 0.98085 1.00950 1.69747 1.26045 1.23464 1.37106 0.85137 0.79826 0.77202 0.78015 1.18717 1.18991 1.18420 1.20375 1.11306 0.95571 1.03066 0.90506 0.90099 0.94576 0.75458 0.88263 0.90863 0.82456 0.81127 0.84607 0.90420 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.70 9.34 71.98 0.67 -3.03 16 2 C 0.10 2.02 3.99 30.60 0.12 2.14 16 3 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 4 O -0.59 -13.82 13.29 -144.34 -1.92 -15.74 16 5 C 0.05 1.21 4.61 71.98 0.33 1.54 16 6 O -0.33 -12.18 9.22 -87.74 -0.81 -12.99 16 7 C 0.16 6.52 6.68 22.49 0.15 6.67 16 8 C -0.27 -8.37 9.04 22.40 0.20 -8.17 16 9 C -0.03 -0.83 10.03 22.24 0.22 -0.61 16 10 C -0.23 -8.80 9.99 22.41 0.22 -8.57 16 11 C 0.16 7.74 6.65 22.56 0.15 7.89 16 12 O -0.24 -13.36 8.58 -22.79 -0.20 -13.56 16 13 C -0.40 -25.17 9.95 67.92 0.68 -24.50 16 14 H 0.07 4.87 5.43 -2.91 -0.02 4.86 16 15 C 0.01 0.58 5.49 84.83 0.47 1.05 16 16 N -0.92 -57.09 13.96 21.61 0.30 -56.79 16 17 Si 0.98 46.37 28.62 68.60 1.96 48.33 16 18 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 20 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 21 C -0.28 -14.09 9.10 22.49 0.20 -13.88 16 22 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.03 1.02 7.56 -2.38 -0.02 1.01 16 25 H 0.40 5.27 9.08 -74.05 -0.67 4.59 16 26 H 0.10 1.83 7.66 -2.38 -0.02 1.81 16 27 H 0.07 1.65 7.66 -2.39 -0.02 1.64 16 28 H 0.16 3.52 6.29 -2.91 -0.02 3.51 16 29 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.14 4.74 8.06 -2.91 -0.02 4.71 16 31 H 0.29 16.09 8.31 -92.71 -0.77 15.32 16 32 H 0.10 5.70 5.64 -2.91 -0.02 5.68 16 Total: -1.00 -76.87 278.03 3.23 -73.64 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.47 Total: 16.57 kcal Atomic # 6 Polarization: -42.89 SS G_CDS: 3.42 Total: -39.47 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.30 Total: -56.79 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -2.92 Total: -42.29 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.96 Total: 48.33 kcal Total: -76.87 3.23 -73.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840779254.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.507 kcal (2) G-P(sol) polarization free energy of solvation -76.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds