Wall clock time and date at job start Sun Mar 29 2020 22:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30431 * 125.98758 * 2 1 4 4 N 1.39933 * 108.92567 * 180.26718 * 3 2 1 5 5 C 1.46504 * 125.74100 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47427 * 94.96871 * 5 4 3 7 7 C 1.53003 * 109.46678 * 214.97179 * 5 4 3 8 8 C 1.34243 * 108.51218 * 359.97438 * 4 3 2 9 9 C 1.38151 * 107.40461 * 0.02562 * 8 4 3 10 10 C 1.47258 * 126.43158 * 179.97438 * 9 8 4 11 11 O 1.21559 * 119.99836 * 180.02562 * 10 9 8 12 12 O 1.34788 * 119.99921 * 0.02562 * 10 9 8 13 13 C 1.34891 * 117.00073 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99862 * 359.97438 * 13 12 10 15 15 C 1.38756 * 120.00477 * 180.02562 * 13 12 10 16 16 N 1.31451 * 119.99617 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00723 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47121 * 59.99008 * 17 15 13 19 19 H 1.48498 * 109.47508 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46971 * 299.99819 * 17 15 13 21 21 H 1.09004 * 109.46697 * 269.69196 * 1 2 3 22 22 H 1.08999 * 109.47321 * 29.69216 * 1 2 3 23 23 H 1.09005 * 109.46799 * 149.69523 * 1 2 3 24 24 H 1.08999 * 109.47020 * 334.96627 * 5 4 3 25 25 H 1.09002 * 109.46972 * 59.99417 * 6 5 4 26 26 H 1.09000 * 109.47023 * 179.97438 * 6 5 4 27 27 H 1.09003 * 109.46910 * 300.00171 * 6 5 4 28 28 H 1.09001 * 109.46956 * 59.99786 * 7 5 4 29 29 H 1.09000 * 109.46705 * 180.02562 * 7 5 4 30 30 H 1.08999 * 109.46945 * 299.99494 * 7 5 4 31 31 H 1.08004 * 126.29998 * 179.97438 * 8 4 3 32 32 H 0.97003 * 120.00221 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0554 0.0000 4 7 3.6112 0.6448 -0.0062 5 6 4.7782 1.5305 -0.0076 6 6 5.2652 1.7348 1.4283 7 6 5.8960 0.8998 -0.8405 8 6 3.6452 -0.6972 -0.0094 9 6 2.3378 -1.1437 -0.0059 10 6 1.8931 -2.5475 -0.0082 11 8 0.7060 -2.8090 -0.0051 12 8 2.8024 -3.5424 -0.0137 13 6 2.3283 -4.8053 -0.0160 14 1 1.2628 -4.9821 -0.0131 15 6 3.2094 -5.8772 -0.0211 16 7 4.5062 -5.6620 -0.0242 17 14 2.5530 -7.6260 -0.0236 18 1 1.7201 -7.8404 -1.2342 19 1 3.6898 -8.5815 -0.0297 20 1 1.7271 -7.8465 1.1907 21 1 -0.3633 -0.0055 1.0277 22 1 -0.3634 0.8927 -0.5090 23 1 -0.3633 -0.8873 -0.5186 24 1 4.5031 2.4932 -0.4384 25 1 5.5402 0.7721 1.8591 26 1 6.1338 2.3934 1.4271 27 1 4.4688 2.1841 2.0216 28 1 5.5489 0.7543 -1.8635 29 1 6.7644 1.5586 -0.8412 30 1 6.1710 -0.0629 -0.4097 31 1 4.5315 -1.3143 -0.0147 32 1 5.1222 -6.4113 -0.0273 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848812730.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:52 Heat of formation + Delta-G solvation = -14.153668 kcal Electronic energy + Delta-G solvation = -16754.975259 eV Core-core repulsion = 13910.618635 eV Total energy + Delta-G solvation = -2844.356623 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01588 -38.51667 -35.93941 -34.85072 -32.08829 -31.41961 -29.94893 -27.57031 -27.17813 -25.38838 -23.33721 -20.97825 -19.85383 -19.05032 -17.56483 -17.09734 -15.77568 -15.30485 -14.67333 -14.35630 -14.26016 -14.03768 -13.83576 -13.22167 -12.90002 -12.51047 -12.34898 -12.15829 -12.11298 -11.68575 -11.48121 -11.42188 -11.22566 -11.13663 -10.49093 -10.37797 -10.34531 -9.74453 -8.96829 -8.87489 -8.50902 -8.16637 -6.35553 -3.99516 2.01618 2.58112 2.64354 3.22843 3.23552 3.27015 4.03854 4.27240 4.40320 4.73952 4.82217 4.91048 5.02979 5.19606 5.24251 5.32836 5.38164 5.54416 5.64133 5.66947 5.90660 5.98029 6.06812 6.12129 6.24247 6.44231 6.86212 7.08125 7.25813 7.48260 8.01134 8.03732 8.83839 9.14619 9.98578 10.83315 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.027455 B = 0.006763 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.601499 B = 4138.995905 C = 4991.274427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.124 3.876 3 N -0.314 5.314 4 N -0.364 5.364 5 C 0.155 3.845 6 C -0.166 4.166 7 C -0.169 4.169 8 C 0.112 3.888 9 C -0.247 4.247 10 C 0.478 3.522 11 O -0.556 6.556 12 O -0.216 6.216 13 C -0.373 4.373 14 H 0.095 0.905 15 C 0.040 3.960 16 N -0.870 5.870 17 Si 0.943 3.057 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.270 1.270 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.096 0.904 24 H 0.101 0.899 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.187 0.813 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.323 12.440 0.163 12.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.043 4.043 3 N -0.135 5.135 4 N -0.144 5.144 5 C 0.054 3.946 6 C -0.224 4.224 7 C -0.227 4.227 8 C -0.037 4.037 9 C -0.259 4.259 10 C 0.325 3.675 11 O -0.453 6.453 12 O -0.123 6.123 13 C -0.450 4.450 14 H 0.113 0.887 15 C -0.164 4.164 16 N -0.507 5.507 17 Si 0.768 3.232 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.195 1.195 21 H 0.094 0.906 22 H 0.084 0.916 23 H 0.115 0.885 24 H 0.119 0.881 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.204 0.796 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.399 13.598 0.163 14.018 hybrid contribution -0.068 -1.746 0.041 1.748 sum 3.331 11.853 0.204 12.314 Atomic orbital electron populations 1.20292 0.86029 1.03612 1.03208 1.22394 0.97030 0.88820 0.96024 1.77005 0.86213 1.22704 1.27625 1.48494 1.05271 1.04590 1.56041 1.21273 0.82261 0.93523 0.97547 1.22257 1.01862 1.03180 0.95114 1.22242 0.97466 1.02437 1.00528 1.23204 0.99669 0.84535 0.96291 1.19633 0.91968 0.92576 1.21738 1.19780 0.84653 0.84993 0.78041 1.90584 1.18142 1.84598 1.52008 1.83917 1.37071 1.15087 1.76268 1.21179 0.94087 0.78210 1.51511 0.88725 1.25292 0.94963 0.99581 0.96522 1.69977 1.01295 1.32235 1.47232 0.85748 0.78093 0.80043 0.79315 1.19536 1.20504 1.19540 0.90616 0.91635 0.88536 0.88076 0.91519 0.90559 0.91663 0.91305 0.90032 0.90890 0.79572 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 9.91 36.01 0.36 -0.87 16 2 C 0.12 2.43 7.27 -82.00 -0.60 1.83 16 3 N -0.31 -5.68 12.50 33.91 0.42 -5.26 16 4 N -0.36 -5.85 3.50 -54.28 -0.19 -6.04 16 5 C 0.16 1.75 3.91 -67.93 -0.27 1.49 16 6 C -0.17 -1.63 9.52 37.16 0.35 -1.28 16 7 C -0.17 -1.60 8.83 37.16 0.33 -1.27 16 8 C 0.11 2.08 10.43 -16.53 -0.17 1.90 16 9 C -0.25 -5.39 6.13 -105.08 -0.64 -6.03 16 10 C 0.48 12.59 7.89 34.40 0.27 12.86 16 11 O -0.56 -15.37 14.17 -19.31 -0.27 -15.65 16 12 O -0.22 -6.31 9.57 -21.90 -0.21 -6.52 16 13 C -0.37 -11.17 9.65 30.92 0.30 -10.88 16 14 H 0.10 2.84 6.86 -52.48 -0.36 2.48 16 15 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 16 N -0.87 -25.36 13.67 55.48 0.76 -24.60 16 17 Si 0.94 21.48 29.55 -169.99 -5.02 16.46 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.10 1.79 6.57 -51.93 -0.34 1.45 16 24 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.74 7.13 -51.93 -0.37 0.37 16 31 H 0.19 3.21 7.23 -52.48 -0.38 2.83 16 32 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 284.53 15.07 4.29 4.29 Total: -1.00 -34.19 284.53 -4.36 -38.54 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -3.97 Total: 0.00 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.17 Total: -1.21 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.99 Total: -35.91 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.48 Total: -22.17 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -34.19 -4.36 -38.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848812730.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.391 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds