Wall clock time and date at job start Sun Mar 29 2020 22:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30431 * 125.98758 * 2 1 4 4 N 1.39933 * 108.92567 * 180.26718 * 3 2 1 5 5 C 1.46504 * 125.74100 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47427 * 94.96871 * 5 4 3 7 7 C 1.53003 * 109.46678 * 214.97179 * 5 4 3 8 8 C 1.34243 * 108.51218 * 359.97438 * 4 3 2 9 9 C 1.38151 * 107.40461 * 0.02562 * 8 4 3 10 10 C 1.47258 * 126.43158 * 179.97438 * 9 8 4 11 11 O 1.21559 * 119.99836 * 180.02562 * 10 9 8 12 12 O 1.34788 * 119.99921 * 0.02562 * 10 9 8 13 13 C 1.34891 * 117.00073 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99862 * 359.97438 * 13 12 10 15 15 C 1.38756 * 120.00477 * 180.02562 * 13 12 10 16 16 N 1.31451 * 119.99617 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00723 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47121 * 59.99008 * 17 15 13 19 19 H 1.48498 * 109.47508 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46971 * 299.99819 * 17 15 13 21 21 H 1.09004 * 109.46697 * 269.69196 * 1 2 3 22 22 H 1.08999 * 109.47321 * 29.69216 * 1 2 3 23 23 H 1.09005 * 109.46799 * 149.69523 * 1 2 3 24 24 H 1.08999 * 109.47020 * 334.96627 * 5 4 3 25 25 H 1.09002 * 109.46972 * 59.99417 * 6 5 4 26 26 H 1.09000 * 109.47023 * 179.97438 * 6 5 4 27 27 H 1.09003 * 109.46910 * 300.00171 * 6 5 4 28 28 H 1.09001 * 109.46956 * 59.99786 * 7 5 4 29 29 H 1.09000 * 109.46705 * 180.02562 * 7 5 4 30 30 H 1.08999 * 109.46945 * 299.99494 * 7 5 4 31 31 H 1.08004 * 126.29998 * 179.97438 * 8 4 3 32 32 H 0.97003 * 120.00221 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0554 0.0000 4 7 3.6112 0.6448 -0.0062 5 6 4.7782 1.5305 -0.0076 6 6 5.2652 1.7348 1.4283 7 6 5.8960 0.8998 -0.8405 8 6 3.6452 -0.6972 -0.0094 9 6 2.3378 -1.1437 -0.0059 10 6 1.8931 -2.5475 -0.0082 11 8 0.7060 -2.8090 -0.0051 12 8 2.8024 -3.5424 -0.0137 13 6 2.3283 -4.8053 -0.0160 14 1 1.2628 -4.9821 -0.0131 15 6 3.2094 -5.8772 -0.0211 16 7 4.5062 -5.6620 -0.0242 17 14 2.5530 -7.6260 -0.0236 18 1 1.7201 -7.8404 -1.2342 19 1 3.6898 -8.5815 -0.0297 20 1 1.7271 -7.8465 1.1907 21 1 -0.3633 -0.0055 1.0277 22 1 -0.3634 0.8927 -0.5090 23 1 -0.3633 -0.8873 -0.5186 24 1 4.5031 2.4932 -0.4384 25 1 5.5402 0.7721 1.8591 26 1 6.1338 2.3934 1.4271 27 1 4.4688 2.1841 2.0216 28 1 5.5489 0.7543 -1.8635 29 1 6.7644 1.5586 -0.8412 30 1 6.1710 -0.0629 -0.4097 31 1 4.5315 -1.3143 -0.0147 32 1 5.1222 -6.4113 -0.0273 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848812730.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:52 Heat of formation + Delta-G solvation = -36.401176 kcal Electronic energy + Delta-G solvation = -16755.939983 eV Core-core repulsion = 13910.618635 eV Total energy + Delta-G solvation = -2845.321348 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.49266 -40.57981 -37.33850 -36.66541 -34.25173 -32.73357 -31.53578 -28.72130 -28.17915 -27.47000 -24.91618 -22.55085 -21.27665 -20.53612 -19.73135 -18.78033 -17.49389 -16.80768 -16.29863 -16.14948 -16.02636 -15.49708 -15.12796 -14.46007 -14.34369 -14.01113 -13.61644 -13.48870 -13.19448 -13.12459 -13.04644 -12.93365 -12.37013 -12.29781 -12.21463 -12.14371 -11.97376 -11.87219 -10.94918 -10.64783 -10.35707 -9.73858 -8.49956 -6.26379 0.44949 1.02078 1.30806 1.38078 1.46609 1.52631 2.17031 2.33930 2.90680 3.07250 3.34579 3.72751 3.80439 3.89604 4.05950 4.16530 4.50657 4.62129 4.69320 4.74939 4.77658 4.80245 4.87580 4.98315 5.04625 5.17951 5.20743 5.23897 5.53287 5.88180 5.90723 6.52472 6.72018 6.95896 7.84865 8.71031 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.027455 B = 0.006763 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.601499 B = 4138.995905 C = 4991.274427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.118 3.882 3 N -0.312 5.312 4 N -0.346 5.346 5 C 0.142 3.858 6 C -0.161 4.161 7 C -0.165 4.165 8 C 0.131 3.869 9 C -0.293 4.293 10 C 0.477 3.523 11 O -0.579 6.579 12 O -0.241 6.241 13 C -0.417 4.417 14 H 0.081 0.919 15 C -0.004 4.004 16 N -0.902 5.902 17 Si 1.017 2.983 18 H -0.263 1.263 19 H -0.260 1.260 20 H -0.263 1.263 21 H 0.085 0.915 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.119 0.881 25 H 0.056 0.944 26 H 0.112 0.888 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.197 0.803 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 13.349 0.185 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.048 4.048 3 N -0.134 5.134 4 N -0.125 5.125 5 C 0.043 3.957 6 C -0.219 4.219 7 C -0.223 4.223 8 C -0.022 4.022 9 C -0.306 4.306 10 C 0.326 3.674 11 O -0.477 6.477 12 O -0.149 6.149 13 C -0.493 4.493 14 H 0.099 0.901 15 C -0.203 4.203 16 N -0.540 5.540 17 Si 0.835 3.165 18 H -0.187 1.187 19 H -0.183 1.183 20 H -0.187 1.187 21 H 0.104 0.896 22 H 0.113 0.887 23 H 0.092 0.908 24 H 0.137 0.863 25 H 0.075 0.925 26 H 0.131 0.869 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.083 0.917 31 H 0.214 0.786 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.536 14.569 0.186 15.259 hybrid contribution -0.322 -1.827 0.033 1.855 sum 4.213 12.742 0.220 13.422 Atomic orbital electron populations 1.20310 0.84687 1.03918 1.03928 1.22701 0.98180 0.88127 0.95809 1.76982 0.86992 1.22020 1.27402 1.49033 1.05939 1.04302 1.53252 1.21873 0.81033 0.93461 0.99297 1.22251 1.02829 1.03380 0.93404 1.22275 0.97891 1.02784 0.99371 1.23242 0.98779 0.85747 0.94392 1.19567 0.94182 0.90752 1.26057 1.20552 0.84297 0.86223 0.76350 1.90540 1.19001 1.85308 1.52901 1.83926 1.38033 1.15452 1.77483 1.21396 0.94046 0.79319 1.54524 0.90127 1.26473 0.95134 1.03852 0.94880 1.70055 1.02529 1.34225 1.47172 0.84702 0.78165 0.73893 0.79696 1.18733 1.18330 1.18743 0.89614 0.88652 0.90796 0.86294 0.92530 0.86913 0.92744 0.92178 0.86443 0.91727 0.78620 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.34 9.91 71.24 0.71 -1.64 16 2 C 0.12 4.61 7.27 43.53 0.32 4.93 16 3 N -0.31 -10.89 12.50 -46.64 -0.58 -11.48 16 4 N -0.35 -10.64 3.50 -325.66 -1.14 -11.78 16 5 C 0.14 2.82 3.91 44.99 0.18 3.00 16 6 C -0.16 -2.69 9.52 71.98 0.69 -2.00 16 7 C -0.17 -2.68 8.83 71.98 0.64 -2.04 16 8 C 0.13 4.83 10.43 84.30 0.88 5.71 16 9 C -0.29 -13.08 6.13 -20.16 -0.12 -13.20 16 10 C 0.48 26.24 7.89 70.19 0.55 26.79 16 11 O -0.58 -33.56 14.17 19.65 0.28 -33.28 16 12 O -0.24 -14.67 9.57 10.40 0.10 -14.57 16 13 C -0.42 -25.89 9.65 67.94 0.66 -25.24 16 14 H 0.08 5.08 6.86 -2.91 -0.02 5.06 16 15 C 0.00 -0.20 5.49 84.87 0.47 0.27 16 16 N -0.90 -53.10 13.67 21.63 0.30 -52.81 16 17 Si 1.02 43.91 29.55 68.60 2.03 45.94 16 18 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 20 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 21 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 22 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 23 H 0.07 2.82 6.57 -2.38 -0.02 2.80 16 24 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.18 7.13 -2.39 -0.02 1.16 16 31 H 0.20 6.77 7.23 -2.91 -0.02 6.75 16 32 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -76.21 284.53 7.05 -69.16 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.12 Total: 12.26 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 4.95 Total: -3.44 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -1.43 Total: -76.07 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: 0.38 Total: -47.86 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -76.21 7.05 -69.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848812730.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.759 kcal (2) G-P(sol) polarization free energy of solvation -76.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds