Wall clock time and date at job start Sun Mar 29 2020 22:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48497 * 109.47073 * 269.99851 * 3 2 1 5 5 H 1.48496 * 109.47248 * 30.00332 * 3 2 1 6 6 H 1.48502 * 109.47056 * 150.00116 * 3 2 1 7 7 C 1.37877 * 119.99595 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99416 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00602 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47642 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00037 * 179.97438 * 10 9 7 12 12 O 1.21583 * 120.00221 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99472 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99303 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46679 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.46889 * 180.02562 * 15 14 13 17 17 C 1.41385 * 126.58187 * 90.00355 * 16 15 14 18 18 C 1.34512 * 106.83926 * 180.25995 * 17 16 15 19 19 O 1.34305 * 108.42433 * 359.63135 * 18 17 16 20 20 C 1.34305 * 109.47225 * 0.37505 * 19 18 17 21 21 H 0.97006 * 120.00027 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47528 * 59.99518 * 9 7 2 23 23 H 1.09010 * 109.46633 * 300.00099 * 9 7 2 24 24 H 0.97000 * 119.99398 * 359.97438 * 10 9 7 25 25 H 0.96998 * 120.00103 * 0.02562 * 13 11 10 26 26 H 1.08994 * 109.47578 * 60.00669 * 14 13 11 27 27 H 1.09009 * 109.47451 * 300.00041 * 14 13 11 28 28 H 1.09005 * 109.47346 * 60.00036 * 15 14 13 29 29 H 1.09000 * 109.47009 * 300.00074 * 15 14 13 30 30 H 1.08002 * 126.57514 * 359.97438 * 17 16 15 31 31 H 1.07998 * 125.78467 * 179.77218 * 18 17 16 32 32 H 1.08000 * 125.78555 * 179.79179 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5583 -5.1056 0.0011 13 7 2.6295 -5.9078 0.0005 14 6 2.1411 -7.2890 0.0005 15 6 3.3312 -8.2507 0.0005 16 6 2.8288 -9.6715 -0.0001 17 6 2.5482 -10.4655 -1.1358 18 6 2.1205 -11.6573 -0.6819 19 8 2.1348 -11.6302 0.6607 20 6 2.5606 -10.4274 1.0798 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5572 -0.8896 23 1 0.6240 -2.5566 0.8904 24 1 3.1566 -3.4354 0.0002 25 1 3.5832 -5.7306 0.0002 26 1 1.5353 -7.4602 -0.8892 27 1 1.5359 -7.4604 0.8908 28 1 3.9368 -8.0794 0.8905 29 1 3.9367 -8.0794 -0.8894 30 1 2.6526 -10.1700 -2.1693 31 1 1.8191 -12.4948 -1.2936 32 1 2.6694 -10.1194 2.1092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854025250.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:32 Heat of formation + Delta-G solvation = -53.463330 kcal Electronic energy + Delta-G solvation = -15728.174515 eV Core-core repulsion = 12882.113297 eV Total energy + Delta-G solvation = -2846.061218 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.41828 -40.85183 -37.01521 -36.02798 -34.64171 -34.14225 -31.48211 -29.77297 -28.59537 -25.12050 -23.84785 -22.46046 -21.94683 -21.12864 -19.77899 -18.28633 -17.93024 -17.39792 -16.80040 -16.72726 -16.41881 -15.58482 -15.38701 -15.25636 -14.89924 -14.07398 -14.02621 -13.65568 -13.41557 -13.27576 -13.05568 -12.87174 -12.70111 -12.20824 -12.06091 -11.46351 -11.27749 -10.79416 -10.58398 -10.27230 -9.57508 -9.41926 -8.27140 -6.43729 0.89441 1.44580 1.47669 1.58256 1.61962 1.98088 2.25090 2.35399 2.41667 3.07838 3.56366 3.91903 4.02739 4.11400 4.20955 4.38160 4.61422 4.82814 4.85656 5.00042 5.13437 5.23533 5.28073 5.35794 5.49997 5.54201 5.62185 5.69547 5.86378 6.23036 6.29587 6.68315 7.25746 7.34344 7.73840 8.85389 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.082238 B = 0.003369 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.394362 B = 8309.328251 C = 8448.132985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.988 3.012 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.284 3.716 10 N -0.722 5.722 11 C 0.689 3.311 12 O -0.653 6.653 13 N -0.731 5.731 14 C 0.148 3.852 15 C -0.044 4.044 16 C -0.195 4.195 17 C -0.228 4.228 18 C -0.045 4.045 19 O -0.192 6.192 20 C -0.042 4.042 21 H 0.269 0.731 22 H -0.016 1.016 23 H -0.015 1.015 24 H 0.406 0.594 25 H 0.413 0.587 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.157 0.843 31 H 0.233 0.767 32 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.596 -20.017 -0.167 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.161 3.839 10 N -0.376 5.376 11 C 0.388 3.612 12 O -0.536 6.536 13 N -0.389 5.389 14 C 0.023 3.977 15 C -0.082 4.082 16 C -0.197 4.197 17 C -0.247 4.247 18 C -0.111 4.111 19 O -0.088 6.088 20 C -0.110 4.110 21 H 0.078 0.922 22 H 0.002 0.998 23 H 0.003 0.997 24 H 0.241 0.759 25 H 0.250 0.750 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.174 0.826 31 H 0.249 0.751 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 10.280 -20.340 0.021 22.790 hybrid contribution 0.486 1.166 -0.253 1.288 sum 10.766 -19.174 -0.232 21.991 Atomic orbital electron populations 1.70153 1.08330 1.28573 1.50004 1.26093 0.95793 1.03953 0.93880 0.85116 0.78463 0.76795 0.78575 1.19615 1.21001 1.17818 1.21609 0.94360 0.90409 1.52840 0.89693 1.18413 0.88164 0.83434 0.93904 1.45283 1.10929 1.03747 1.77662 1.16366 0.85132 0.81719 0.77967 1.90838 1.16989 1.85034 1.60707 1.44890 1.09143 1.04525 1.80324 1.21122 0.96989 0.78677 1.00869 1.20026 0.95675 0.87465 1.05032 1.20447 1.08093 0.97701 0.93492 1.22078 1.07132 0.94934 1.00604 1.24669 1.04584 1.01342 0.80532 1.84079 1.66724 1.34380 1.23584 1.24437 1.02703 0.82889 1.00928 0.92245 0.99786 0.99704 0.75869 0.75017 0.93749 0.93244 0.88344 0.89045 0.82560 0.75110 0.75900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.99 42.44 29.54 68.60 2.03 44.47 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 7 C -0.55 -30.47 9.28 25.60 0.24 -30.24 16 8 H 0.09 4.19 7.60 -2.91 -0.02 4.16 16 9 C 0.28 16.05 5.43 85.63 0.46 16.52 16 10 N -0.72 -31.66 5.55 -482.29 -2.68 -34.33 16 11 C 0.69 29.53 8.57 179.05 1.53 31.06 16 12 O -0.65 -35.11 16.34 -3.98 -0.06 -35.18 16 13 N -0.73 -21.21 5.56 -478.52 -2.66 -23.88 16 14 C 0.15 3.85 5.66 86.38 0.49 4.34 16 15 C -0.04 -0.75 5.85 29.85 0.17 -0.57 16 16 C -0.20 -3.63 5.42 -19.94 -0.11 -3.74 16 17 C -0.23 -4.05 10.87 22.19 0.24 -3.81 16 18 C -0.04 -0.69 12.09 66.97 0.81 0.12 16 19 O -0.19 -3.58 10.65 -2.52 -0.03 -3.61 16 20 C -0.04 -0.73 12.01 66.97 0.80 0.08 16 21 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 22 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 23 H -0.01 -0.95 8.14 -2.38 -0.02 -0.97 16 24 H 0.41 14.39 8.34 -92.71 -0.77 13.62 16 25 H 0.41 8.54 8.49 -92.71 -0.79 7.75 16 26 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 31 H 0.23 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.22 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -77.90 288.62 1.57 -76.33 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -0.42 Total: 18.45 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 5.11 Total: 14.34 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -5.05 Total: -114.81 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -0.09 Total: -38.79 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -77.90 1.57 -76.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854025250.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.870 kcal (2) G-P(sol) polarization free energy of solvation -77.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds