Wall clock time and date at job start Sun Mar 29 2020 22:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12759 * 2 1 4 4 C 1.39872 * 107.91954 * 179.90471 * 3 2 1 5 5 N 1.30835 * 108.20422 * 0.36600 * 4 3 2 6 6 N 1.34949 * 126.12355 * 180.31496 * 2 1 3 7 7 C 1.46497 * 126.03962 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47267 * 90.00209 * 7 6 2 9 9 O 1.20828 * 119.99556 * 359.97438 * 8 7 6 10 10 O 1.34220 * 119.99966 * 180.02562 * 8 7 6 11 11 C 1.45202 * 117.00042 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47042 * 29.99799 * 11 10 8 13 13 C 1.53002 * 109.46780 * 269.99636 * 11 10 8 14 14 C 1.50700 * 109.47375 * 149.99464 * 11 10 8 15 15 H 1.08002 * 119.99631 * 0.02562 * 14 11 10 16 16 C 1.37877 * 119.99991 * 179.97438 * 14 11 10 17 17 N 1.31510 * 119.99906 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99903 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.46880 * 59.99914 * 18 16 14 20 20 H 1.48500 * 109.46788 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47082 * 300.00148 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.68517 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.68598 * 1 2 3 25 25 H 1.08000 * 126.04140 * 0.04339 * 3 2 1 26 26 H 1.07995 * 125.89631 * 180.14711 * 4 3 2 27 27 H 1.08997 * 109.46689 * 210.00046 * 7 6 2 28 28 H 1.09002 * 109.46868 * 329.99889 * 7 6 2 29 29 H 1.08998 * 109.46665 * 179.97438 * 13 11 10 30 30 H 1.08995 * 109.46961 * 299.99769 * 13 11 10 31 31 H 1.09001 * 109.47191 * 59.99949 * 13 11 10 32 32 H 0.97009 * 119.99654 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0022 5 7 3.6334 -0.6524 -0.0044 6 7 2.3026 -1.0900 -0.0060 7 6 1.8539 -2.4846 -0.0131 8 6 1.6995 -2.9554 -1.4364 9 8 1.9393 -2.2030 -2.3509 10 8 1.2947 -4.2101 -1.6880 11 6 1.1676 -4.5946 -3.0824 12 1 1.8864 -4.0347 -3.6807 13 6 -0.2501 -4.2874 -3.5689 14 6 1.4384 -6.0704 -3.2233 15 1 1.6812 -6.6604 -2.3519 16 6 1.3750 -6.6675 -4.4645 17 7 1.0788 -5.9491 -5.5254 18 14 1.7099 -8.4970 -4.6389 19 1 0.7306 -9.2594 -3.8235 20 1 1.5800 -8.8901 -6.0651 21 1 3.0859 -8.7955 -4.1670 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3633 0.8928 -0.5090 25 1 1.9741 2.1211 0.0007 26 1 4.5084 1.2891 0.0050 27 1 2.5900 -3.1056 0.4972 28 1 0.8955 -2.5605 0.5007 29 1 -0.3453 -4.5756 -4.6158 30 1 -0.9688 -4.8474 -2.9707 31 1 -0.4459 -3.2200 -3.4670 32 1 1.0346 -6.3692 -6.3987 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860545979.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:07 Heat of formation + Delta-G solvation = -34.290254 kcal Electronic energy + Delta-G solvation = -16755.835232 eV Core-core repulsion = 13910.605421 eV Total energy + Delta-G solvation = -2845.229811 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.34247 -41.18596 -37.75054 -35.40325 -34.57215 -33.01911 -31.76165 -28.78456 -27.84654 -27.48624 -24.08817 -22.28999 -21.77322 -20.60163 -19.05364 -18.68615 -17.74605 -17.31806 -17.09671 -16.40236 -15.58864 -15.31749 -14.81952 -14.75035 -14.31166 -13.95541 -13.81054 -13.57069 -13.43161 -13.13200 -13.02126 -12.92491 -12.83900 -12.42654 -12.20091 -11.72578 -11.63670 -11.59445 -11.06353 -10.63643 -10.32736 -9.48902 -8.31979 -6.49755 0.71859 1.13811 1.34451 1.41843 1.44869 1.53445 1.93459 2.06082 2.39484 2.99013 3.54687 3.71034 3.79513 4.04512 4.14186 4.30906 4.47197 4.70221 4.72552 4.77099 4.77372 4.82992 5.00834 5.08475 5.24521 5.44058 5.57101 5.71211 5.85420 5.99903 6.01639 6.54497 6.72935 6.82227 7.21892 8.75512 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.048462 B = 0.005304 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.634595 B = 5277.707243 C = 5449.066208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.083 3.917 3 C -0.284 4.284 4 C 0.047 3.953 5 N -0.340 5.340 6 N -0.375 5.375 7 C 0.148 3.852 8 C 0.431 3.569 9 O -0.545 6.545 10 O -0.355 6.355 11 C 0.219 3.781 12 H 0.001 0.999 13 C -0.140 4.140 14 C -0.551 4.551 15 H 0.071 0.929 16 C 0.016 3.984 17 N -0.918 5.918 18 Si 0.985 3.015 19 H -0.260 1.260 20 H -0.278 1.278 21 H -0.270 1.270 22 H 0.112 0.888 23 H 0.059 0.941 24 H 0.101 0.899 25 H 0.175 0.825 26 H 0.212 0.788 27 H 0.151 0.849 28 H 0.174 0.826 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.023 0.977 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 9.861 12.971 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.043 4.043 3 C -0.312 4.312 4 C -0.139 4.139 5 N -0.160 5.160 6 N -0.159 5.159 7 C 0.025 3.975 8 C 0.273 3.727 9 O -0.436 6.436 10 O -0.271 6.271 11 C 0.166 3.834 12 H 0.018 0.982 13 C -0.198 4.198 14 C -0.588 4.588 15 H 0.089 0.911 16 C -0.184 4.184 17 N -0.556 5.556 18 Si 0.808 3.192 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.195 1.195 22 H 0.130 0.870 23 H 0.078 0.922 24 H 0.120 0.880 25 H 0.193 0.807 26 H 0.228 0.772 27 H 0.169 0.831 28 H 0.191 0.809 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.730 8.838 12.458 15.372 hybrid contribution -0.042 0.024 -0.886 0.887 sum -1.771 8.862 11.572 14.683 Atomic orbital electron populations 1.20628 0.85029 1.04429 1.05080 1.21836 0.96391 0.86953 0.99109 1.21626 0.91869 1.00014 1.17688 1.24452 0.99812 0.91673 0.97983 1.77330 0.97540 1.14925 1.26209 1.48196 1.04247 1.05136 1.58303 1.21256 1.06847 0.79741 0.89666 1.24704 0.73097 0.81049 0.93818 1.90644 1.47819 1.56414 1.48681 1.86458 1.76632 1.29379 1.34611 1.20376 0.94562 0.95099 0.73402 0.98154 1.21965 0.96803 0.97340 1.03673 1.21281 1.50205 0.92342 0.94982 0.91100 1.25862 0.93844 1.04197 0.94478 1.70018 1.47672 1.38218 0.99676 0.85205 0.79198 0.77338 0.77509 1.18450 1.20284 1.19475 0.87006 0.92242 0.88040 0.80747 0.77150 0.83118 0.80858 0.90204 0.92935 0.95769 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.90 71.24 0.71 -0.98 16 2 C 0.08 2.16 6.93 41.41 0.29 2.45 16 3 C -0.28 -6.83 10.72 21.99 0.24 -6.60 16 4 C 0.05 1.25 12.03 85.24 1.02 2.28 16 5 N -0.34 -11.50 12.58 -57.03 -0.72 -12.22 16 6 N -0.37 -11.65 3.10 -338.40 -1.05 -12.70 16 7 C 0.15 4.20 6.66 85.63 0.57 4.77 16 8 C 0.43 17.96 8.00 71.24 0.57 18.53 16 9 O -0.55 -27.44 15.65 21.96 0.34 -27.10 16 10 O -0.36 -16.63 9.86 -51.32 -0.51 -17.14 16 11 C 0.22 12.04 2.56 29.85 0.08 12.12 16 12 H 0.00 0.04 7.16 -2.39 -0.02 0.02 16 13 C -0.14 -7.12 9.33 71.98 0.67 -6.45 16 14 C -0.55 -31.16 8.90 25.60 0.23 -30.93 16 15 H 0.07 3.88 7.81 -2.91 -0.02 3.86 16 16 C 0.02 0.88 5.30 84.66 0.45 1.33 16 17 N -0.92 -52.99 11.32 21.45 0.24 -52.75 16 18 Si 0.98 42.67 29.54 68.60 2.03 44.69 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.06 1.23 7.72 -2.39 -0.02 1.21 16 24 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.18 3.00 8.06 -2.91 -0.02 2.97 16 26 H 0.21 3.91 8.06 -2.91 -0.02 3.89 16 27 H 0.15 3.72 8.14 -2.39 -0.02 3.70 16 28 H 0.17 3.27 7.66 -2.39 -0.02 3.25 16 29 H 0.08 4.40 6.07 -2.39 -0.01 4.38 16 30 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 Total: -1.00 -75.07 285.23 6.27 -68.80 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.12 Total: 11.88 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 4.82 Total: -3.48 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -1.52 Total: -77.67 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -0.16 Total: -44.24 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -75.07 6.27 -68.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860545979.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.511 kcal (2) G-P(sol) polarization free energy of solvation -75.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds