Wall clock time and date at job start Sun Mar 29 2020 22:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39864 * 125.89999 * 2 1 4 4 C 1.35316 * 107.91828 * 179.86198 * 3 2 1 5 5 N 1.34952 * 107.74600 * 0.40147 * 4 3 2 6 6 C 1.46497 * 126.03662 * 179.75302 * 5 4 3 7 7 C 1.52995 * 109.47654 * 124.96854 * 6 5 4 8 8 H 1.08998 * 109.46851 * 54.99450 * 7 6 5 9 9 C 1.52999 * 109.47067 * 295.00149 * 7 6 5 10 10 C 1.50702 * 109.47539 * 174.99644 * 7 6 5 11 11 O 1.21212 * 119.99827 * 0.02562 * 10 7 6 12 12 O 1.34312 * 119.99916 * 180.02562 * 10 7 6 13 13 C 1.34920 * 116.99423 * 180.02562 * 12 10 7 14 14 H 1.07991 * 120.00259 * 0.02562 * 13 12 10 15 15 C 1.38761 * 119.99734 * 179.97438 * 13 12 10 16 16 N 1.31432 * 120.00212 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99822 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.46866 * 89.99889 * 17 15 13 19 19 H 1.48493 * 109.46775 * 210.00001 * 17 15 13 20 20 H 1.48495 * 109.47103 * 329.99883 * 17 15 13 21 21 N 1.30836 * 125.89591 * 180.31016 * 2 1 3 22 22 H 1.08999 * 109.46995 * 269.71428 * 1 2 3 23 23 H 1.08994 * 109.46790 * 29.71114 * 1 2 3 24 24 H 1.08997 * 109.47305 * 149.71555 * 1 2 3 25 25 H 1.07995 * 126.04278 * 359.97438 * 3 2 1 26 26 H 1.08002 * 126.12602 * 180.14496 * 4 3 2 27 27 H 1.09002 * 109.46907 * 244.96896 * 6 5 4 28 28 H 1.09007 * 109.47224 * 4.96492 * 6 5 4 29 29 H 1.09002 * 109.47635 * 59.99545 * 9 7 6 30 30 H 1.09004 * 109.47294 * 179.97438 * 9 7 6 31 31 H 1.09003 * 109.46901 * 299.99820 * 9 7 6 32 32 H 0.96998 * 120.00293 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7152 0.0031 5 7 3.6087 -0.6343 -0.0040 6 6 4.7898 -1.5009 -0.0088 7 6 4.7122 -2.4754 1.1681 8 1 3.7709 -3.0233 1.1247 9 6 4.7880 -1.6953 2.4820 10 6 5.8624 -3.4463 1.0932 11 8 6.6650 -3.3664 0.1884 12 8 5.9982 -4.4001 2.0290 13 6 7.0497 -5.2361 1.9034 14 1 7.7360 -5.1202 1.0777 15 6 7.2499 -6.2440 2.8358 16 7 8.2745 -7.0581 2.7139 17 14 6.0631 -6.4439 4.2645 18 1 4.9667 -7.3654 3.8720 19 1 6.7863 -7.0046 5.4340 20 1 5.4929 -5.1205 4.6232 21 7 2.2742 -1.0599 -0.0057 22 1 -0.3633 -0.0051 1.0276 23 1 -0.3633 0.8925 -0.5093 24 1 -0.3634 -0.8874 -0.5182 25 1 1.9924 2.1597 -0.0004 26 1 4.4892 1.3484 0.0061 27 1 4.8253 -2.0615 -0.9430 28 1 5.6885 -0.8909 0.0832 29 1 3.9561 -0.9931 2.5363 30 1 4.7323 -2.3895 3.3206 31 1 5.7294 -1.1473 2.5254 32 1 8.4143 -7.7629 3.3654 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869983893.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:31 Heat of formation + Delta-G solvation = -10.142623 kcal Electronic energy + Delta-G solvation = -16560.185215 eV Core-core repulsion = 13716.002523 eV Total energy + Delta-G solvation = -2844.182691 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19218 -39.40639 -36.07642 -34.71495 -32.49809 -32.19835 -29.95414 -28.80389 -25.92601 -25.58275 -22.87324 -21.10035 -19.99336 -19.10007 -18.03645 -17.28289 -16.12561 -15.69673 -15.26737 -14.66674 -14.19057 -14.04983 -13.91973 -13.30972 -13.05831 -12.88614 -12.51844 -12.45498 -12.28181 -12.10712 -11.69291 -11.40081 -11.18235 -11.02809 -10.53335 -10.44120 -10.39160 -9.74662 -9.24195 -9.17715 -8.72101 -8.51153 -6.41114 -4.17195 1.93793 2.50153 2.79709 3.08544 3.22187 3.31685 3.36387 4.02055 4.21807 4.55168 4.78436 4.86256 4.94962 5.09389 5.20405 5.33031 5.50423 5.52871 5.63511 5.73073 5.77217 5.81902 5.87640 6.06459 6.13907 6.25744 6.41451 6.71399 7.05354 7.67470 7.79151 7.99151 8.53421 8.96730 9.61808 10.67144 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.041613 B = 0.005403 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.710698 B = 5181.141485 C = 5542.936326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.063 3.937 3 C -0.279 4.279 4 C 0.058 3.942 5 N -0.363 5.363 6 C 0.152 3.848 7 C -0.087 4.087 8 H 0.110 0.890 9 C -0.140 4.140 10 C 0.417 3.583 11 O -0.543 6.543 12 O -0.245 6.245 13 C -0.383 4.383 14 H 0.110 0.890 15 C 0.068 3.932 16 N -0.873 5.873 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.260 1.260 21 N -0.291 5.291 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.144 0.856 26 H 0.172 0.828 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.382 15.176 -1.813 19.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C -0.309 4.309 4 C -0.089 4.089 5 N -0.144 5.144 6 C 0.031 3.969 7 C -0.107 4.107 8 H 0.128 0.872 9 C -0.198 4.198 10 C 0.262 3.738 11 O -0.439 6.439 12 O -0.153 6.153 13 C -0.459 4.459 14 H 0.128 0.872 15 C -0.136 4.136 16 N -0.512 5.512 17 Si 0.729 3.271 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.184 1.184 21 N -0.115 5.115 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.161 0.839 26 H 0.189 0.811 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.864 13.633 -1.951 18.177 hybrid contribution -0.184 0.640 0.612 0.904 sum -12.047 14.273 -1.339 18.726 Atomic orbital electron populations 1.20134 0.86990 1.03000 1.02755 1.22341 0.96871 0.90909 1.00221 1.21320 0.91652 0.99584 1.18302 1.22572 0.99683 0.85027 1.01591 1.48691 1.05359 1.04664 1.55685 1.21580 0.83111 0.92382 0.99823 1.20960 0.98406 0.94958 0.96402 0.87202 1.21731 1.01920 1.00178 0.95940 1.22550 0.86712 0.82594 0.81921 1.90606 1.44656 1.73085 1.35517 1.83506 1.46790 1.38092 1.46887 1.20664 1.02708 1.08591 1.13933 0.87235 1.24541 0.96645 0.94361 0.98094 1.69598 1.27684 1.17301 1.36572 0.86238 0.80570 0.79489 0.80801 1.19771 1.20679 1.18386 1.77325 0.86591 1.22888 1.24686 0.90742 0.90732 0.91073 0.83858 0.81074 0.88532 0.87698 0.92182 0.90805 0.92137 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.45 36.01 0.38 -0.26 16 2 C 0.06 0.80 7.22 -82.41 -0.59 0.20 16 3 C -0.28 -3.15 10.74 -40.01 -0.43 -3.58 16 4 C 0.06 0.67 11.45 -17.22 -0.20 0.47 16 5 N -0.36 -5.15 3.13 -61.37 -0.19 -5.34 16 6 C 0.15 2.28 5.25 -4.05 -0.02 2.26 16 7 C -0.09 -1.52 2.91 -91.77 -0.27 -1.79 16 8 H 0.11 1.93 8.05 -51.93 -0.42 1.52 16 9 C -0.14 -2.17 9.01 37.16 0.33 -1.84 16 10 C 0.42 9.64 7.20 36.01 0.26 9.90 16 11 O -0.54 -13.89 15.16 -19.05 -0.29 -14.18 16 12 O -0.24 -6.44 8.48 -20.71 -0.18 -6.62 16 13 C -0.38 -11.37 10.10 30.93 0.31 -11.06 16 14 H 0.11 3.57 7.09 -52.49 -0.37 3.20 16 15 C 0.07 1.94 5.49 -17.53 -0.10 1.84 16 16 N -0.87 -25.80 13.96 55.48 0.77 -25.03 16 17 Si 0.90 21.46 28.62 -169.99 -4.86 16.60 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 21 N -0.29 -4.49 12.34 33.67 0.42 -4.07 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 26 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.10 1.53 7.96 -51.93 -0.41 1.12 16 28 H 0.10 1.41 8.07 -51.92 -0.42 0.99 16 29 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 30 H 0.07 1.22 8.12 -51.93 -0.42 0.79 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 286.85 15.07 4.32 4.32 Total: -1.00 -33.28 286.85 -4.45 -37.73 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -4.12 Total: 0.42 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -0.32 Total: -3.84 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 1.00 Total: -34.44 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.46 Total: -20.79 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.86 Total: 16.60 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.28 -4.45 -37.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869983893.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.587 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds