Wall clock time and date at job start Sun Mar 29 2020 22:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35318 * 126.03840 * 2 1 4 4 N 1.34948 * 107.74290 * 180.16409 * 3 2 1 5 5 H 0.97001 * 126.03958 * 179.84649 * 4 3 2 6 6 N 1.40091 * 107.92562 * 359.57823 * 4 3 2 7 7 C 1.30835 * 108.20432 * 0.26140 * 6 4 3 8 8 C 1.50698 * 125.89830 * 179.97438 * 7 6 4 9 9 O 1.45202 * 109.47215 * 90.02986 * 8 7 6 10 10 C 1.34230 * 117.00049 * 180.02562 * 9 8 7 11 11 O 1.20823 * 119.99950 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99923 * 179.97438 * 10 9 8 13 13 H 1.09006 * 109.46881 * 299.99864 * 12 10 9 14 14 C 1.52999 * 109.47005 * 59.99659 * 12 10 9 15 15 C 1.50695 * 109.47331 * 180.02562 * 12 10 9 16 16 H 1.07999 * 119.99705 * 359.97438 * 15 12 10 17 17 C 1.37877 * 120.00310 * 180.02562 * 15 12 10 18 18 N 1.31513 * 119.99955 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99913 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47086 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47087 * 120.00113 * 19 17 15 22 22 H 1.48508 * 109.46689 * 239.99524 * 19 17 15 23 23 H 1.09005 * 109.47166 * 270.30742 * 1 2 3 24 24 H 1.08997 * 109.47342 * 30.30462 * 1 2 3 25 25 H 1.09001 * 109.47724 * 150.30757 * 1 2 3 26 26 H 1.07999 * 126.12849 * 0.02562 * 3 2 1 27 27 H 1.09004 * 109.47435 * 210.02905 * 8 7 6 28 28 H 1.08998 * 109.47029 * 330.02713 * 8 7 6 29 29 H 1.08996 * 109.47582 * 300.00179 * 14 12 10 30 30 H 1.09001 * 109.46750 * 60.00631 * 14 12 10 31 31 H 1.09007 * 109.46788 * 180.02562 * 14 12 10 32 32 H 0.96996 * 120.00205 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0942 0.0000 4 7 3.5844 0.6706 -0.0037 5 1 4.3724 1.2361 -0.0067 6 7 3.5754 -0.7303 0.0038 7 6 2.3299 -1.1310 0.0060 8 6 1.8626 -2.5637 0.0131 9 8 1.7122 -3.0169 1.3844 10 6 1.3000 -4.2813 1.5665 11 8 1.0730 -4.9862 0.6118 12 6 1.1216 -4.8221 2.9618 13 1 2.0719 -4.7756 3.4937 14 6 0.0799 -3.9830 3.7046 15 6 0.6561 -6.2535 2.8901 16 1 0.5043 -6.7245 1.9302 17 6 0.4231 -6.9617 4.0500 18 7 0.6076 -6.3880 5.2189 19 14 -0.1545 -8.7359 3.9610 20 1 -0.2850 -9.1432 2.5390 21 1 0.8336 -9.6128 4.6390 22 1 -1.4721 -8.8617 4.6345 23 1 -0.3634 0.0055 1.0277 24 1 -0.3634 0.8872 -0.5185 25 1 -0.3634 -0.8927 -0.5090 26 1 1.9724 2.1223 0.0004 27 1 0.9040 -2.6358 -0.5006 28 1 2.5962 -3.1876 -0.4974 29 1 0.4170 -2.9478 3.7565 30 1 -0.8704 -4.0295 3.1727 31 1 -0.0488 -4.3739 4.7140 32 1 0.4441 -6.8862 6.0349 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884575342.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:23 Heat of formation + Delta-G solvation = -23.258631 kcal Electronic energy + Delta-G solvation = -16551.966101 eV Core-core repulsion = 13707.214657 eV Total energy + Delta-G solvation = -2844.751444 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.31095 -39.44115 -35.77350 -33.84282 -32.86368 -31.65398 -30.53492 -27.26177 -26.38242 -25.16524 -22.96761 -21.06167 -19.77360 -19.56518 -17.83382 -16.67373 -16.03516 -15.81273 -15.33915 -14.74993 -14.38739 -14.08055 -13.13403 -13.05645 -12.81826 -12.74056 -12.53204 -12.05638 -11.73548 -11.44646 -11.02892 -10.73993 -10.67533 -10.65718 -10.29256 -10.03230 -9.99067 -9.67762 -9.04037 -8.99139 -8.49527 -8.41455 -6.07105 -4.12312 1.74939 2.45259 2.77120 3.31328 3.35964 3.39016 3.46634 3.86234 4.44751 4.63945 4.70012 5.16618 5.23524 5.26322 5.46237 5.57865 5.78246 5.87041 5.96741 6.14009 6.19407 6.54897 6.71302 6.92073 6.92702 7.17897 7.25841 7.48435 7.58364 7.78043 7.98544 8.17903 8.88806 8.97904 9.53102 11.00402 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.048792 B = 0.005047 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.730486 B = 5546.499030 C = 5614.238587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.219 4.219 3 C 0.050 3.950 4 N -0.475 5.475 5 H 0.440 0.560 6 N -0.272 5.272 7 C 0.083 3.917 8 C 0.143 3.857 9 O -0.359 6.359 10 C 0.467 3.533 11 O -0.517 6.517 12 C 0.058 3.942 13 H 0.064 0.936 14 C -0.133 4.133 15 C -0.511 4.511 16 H 0.077 0.923 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.904 3.096 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.177 0.823 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.023 0.977 30 H 0.032 0.968 31 H 0.095 0.905 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 15.404 -8.117 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.230 4.230 3 C -0.097 4.097 4 N -0.184 5.184 5 H 0.283 0.717 6 N -0.097 5.097 7 C -0.084 4.084 8 C 0.066 3.934 9 O -0.276 6.276 10 C 0.312 3.688 11 O -0.404 6.404 12 C 0.039 3.961 13 H 0.082 0.918 14 C -0.191 4.191 15 C -0.549 4.549 16 H 0.095 0.905 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.731 3.269 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.194 0.806 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.114 0.886 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.695 14.785 -8.242 17.141 hybrid contribution -0.605 -0.211 -0.106 0.649 sum 2.091 14.574 -8.348 16.925 Atomic orbital electron populations 1.20114 0.89012 1.02097 1.02293 1.20095 0.97510 0.91118 1.14293 1.22331 0.84520 0.99853 1.02979 1.46193 1.07242 1.05531 1.59461 0.71657 1.77324 1.20395 0.88779 1.23190 1.21826 0.90424 0.95585 1.00543 1.20805 1.01384 0.87494 0.83684 1.86676 1.79386 1.32866 1.28672 1.25378 0.71000 0.77421 0.95028 1.90499 1.47452 1.58401 1.44024 1.18775 0.98706 0.95483 0.83162 0.91815 1.21725 0.97344 0.96008 1.03990 1.21184 1.45290 0.94443 0.93942 0.90524 1.24940 0.95222 0.98791 0.95083 1.69892 1.49139 1.36779 0.97308 0.86329 0.78209 0.83957 0.78362 1.19482 1.20930 1.20915 0.91398 0.92075 0.91658 0.80588 0.89626 0.90299 0.95767 0.94924 0.88614 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.18 36.01 0.37 -0.48 16 2 C -0.22 -2.83 6.10 -105.05 -0.64 -3.47 16 3 C 0.05 0.50 11.90 -17.22 -0.21 0.29 16 4 N -0.48 -5.18 7.36 30.45 0.22 -4.96 16 5 H 0.44 3.07 8.96 -182.60 -1.64 1.43 16 6 N -0.27 -4.23 12.70 33.67 0.43 -3.80 16 7 C 0.08 1.32 6.86 -82.41 -0.57 0.75 16 8 C 0.14 2.50 5.84 36.00 0.21 2.71 16 9 O -0.36 -7.60 10.11 -39.26 -0.40 -8.00 16 10 C 0.47 11.28 7.25 36.01 0.26 11.54 16 11 O -0.52 -13.34 15.21 -18.75 -0.29 -13.63 16 12 C 0.06 1.50 2.74 -92.93 -0.25 1.25 16 13 H 0.06 1.72 8.14 -51.93 -0.42 1.30 16 14 C -0.13 -3.19 8.90 37.16 0.33 -2.86 16 15 C -0.51 -14.49 8.37 -34.44 -0.29 -14.78 16 16 H 0.08 2.26 6.76 -52.49 -0.35 1.91 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -25.09 11.32 55.43 0.63 -24.47 16 19 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.74 7.26 -51.93 -0.38 0.36 16 26 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.09 1.38 7.25 -51.93 -0.38 1.00 16 28 H 0.08 1.38 8.13 -51.93 -0.42 0.96 16 29 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 282.47 15.07 4.26 4.26 Total: -1.00 -32.71 282.47 -6.20 -38.91 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.15 Total: -1.45 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.88 Total: -3.45 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 1.28 Total: -33.23 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.68 Total: -21.62 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.71 -6.20 -38.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884575342.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.653 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds