Wall clock time and date at job start Sun Mar 29 2020 22:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35318 * 126.03840 * 2 1 4 4 N 1.34948 * 107.74290 * 180.16409 * 3 2 1 5 5 H 0.97001 * 126.03958 * 179.84649 * 4 3 2 6 6 N 1.40091 * 107.92562 * 359.57823 * 4 3 2 7 7 C 1.30835 * 108.20432 * 0.26140 * 6 4 3 8 8 C 1.50698 * 125.89830 * 179.97438 * 7 6 4 9 9 O 1.45202 * 109.47215 * 90.02986 * 8 7 6 10 10 C 1.34230 * 117.00049 * 180.02562 * 9 8 7 11 11 O 1.20823 * 119.99950 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99923 * 179.97438 * 10 9 8 13 13 H 1.09006 * 109.46881 * 299.99864 * 12 10 9 14 14 C 1.52999 * 109.47005 * 59.99659 * 12 10 9 15 15 C 1.50695 * 109.47331 * 180.02562 * 12 10 9 16 16 H 1.07999 * 119.99705 * 359.97438 * 15 12 10 17 17 C 1.37877 * 120.00310 * 180.02562 * 15 12 10 18 18 N 1.31513 * 119.99955 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99913 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47086 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47087 * 120.00113 * 19 17 15 22 22 H 1.48508 * 109.46689 * 239.99524 * 19 17 15 23 23 H 1.09005 * 109.47166 * 270.30742 * 1 2 3 24 24 H 1.08997 * 109.47342 * 30.30462 * 1 2 3 25 25 H 1.09001 * 109.47724 * 150.30757 * 1 2 3 26 26 H 1.07999 * 126.12849 * 0.02562 * 3 2 1 27 27 H 1.09004 * 109.47435 * 210.02905 * 8 7 6 28 28 H 1.08998 * 109.47029 * 330.02713 * 8 7 6 29 29 H 1.08996 * 109.47582 * 300.00179 * 14 12 10 30 30 H 1.09001 * 109.46750 * 60.00631 * 14 12 10 31 31 H 1.09007 * 109.46788 * 180.02562 * 14 12 10 32 32 H 0.96996 * 120.00205 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0942 0.0000 4 7 3.5844 0.6706 -0.0037 5 1 4.3724 1.2361 -0.0067 6 7 3.5754 -0.7303 0.0038 7 6 2.3299 -1.1310 0.0060 8 6 1.8626 -2.5637 0.0131 9 8 1.7122 -3.0169 1.3844 10 6 1.3000 -4.2813 1.5665 11 8 1.0730 -4.9862 0.6118 12 6 1.1216 -4.8221 2.9618 13 1 2.0719 -4.7756 3.4937 14 6 0.0799 -3.9830 3.7046 15 6 0.6561 -6.2535 2.8901 16 1 0.5043 -6.7245 1.9302 17 6 0.4231 -6.9617 4.0500 18 7 0.6076 -6.3880 5.2189 19 14 -0.1545 -8.7359 3.9610 20 1 -0.2850 -9.1432 2.5390 21 1 0.8336 -9.6128 4.6390 22 1 -1.4721 -8.8617 4.6345 23 1 -0.3634 0.0055 1.0277 24 1 -0.3634 0.8872 -0.5185 25 1 -0.3634 -0.8927 -0.5090 26 1 1.9724 2.1223 0.0004 27 1 0.9040 -2.6358 -0.5006 28 1 2.5962 -3.1876 -0.4974 29 1 0.4170 -2.9478 3.7565 30 1 -0.8704 -4.0295 3.1727 31 1 -0.0488 -4.3739 4.7140 32 1 0.4441 -6.8862 6.0349 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884575342.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:22 Heat of formation + Delta-G solvation = -44.538770 kcal Electronic energy + Delta-G solvation = -16552.888877 eV Core-core repulsion = 13707.214657 eV Total energy + Delta-G solvation = -2845.674220 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.31221 -41.26528 -37.56381 -35.91808 -33.91483 -32.80805 -32.43711 -28.61625 -27.27399 -27.25266 -24.88428 -22.07496 -21.63409 -20.68418 -18.73654 -18.60613 -18.04736 -17.54999 -17.12991 -16.18638 -15.74484 -15.42087 -14.77311 -14.47606 -14.18281 -13.96136 -13.59265 -13.52206 -13.39651 -12.97359 -12.78380 -12.65910 -12.59112 -12.28781 -12.05284 -11.83238 -11.51078 -11.15170 -11.09373 -10.60604 -10.49734 -9.41685 -8.18985 -6.32482 0.71792 1.36573 1.41275 1.44066 1.45042 1.58690 1.89926 2.30720 2.50452 3.11066 3.52731 3.74124 4.04624 4.19878 4.34574 4.46909 4.52604 4.69627 4.84709 4.90937 4.96711 5.00582 5.11111 5.25803 5.37131 5.46135 5.59667 5.69893 5.89322 6.10425 6.42169 6.61166 6.74419 7.02036 7.36432 8.87917 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.048792 B = 0.005047 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.730486 B = 5546.499030 C = 5614.238587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.244 4.244 3 C 0.079 3.921 4 N -0.459 5.459 5 H 0.457 0.543 6 N -0.314 5.314 7 C 0.055 3.945 8 C 0.141 3.859 9 O -0.358 6.358 10 C 0.475 3.525 11 O -0.539 6.539 12 C 0.050 3.950 13 H 0.047 0.953 14 C -0.119 4.119 15 C -0.537 4.537 16 H 0.058 0.942 17 C 0.022 3.978 18 N -0.910 5.910 19 Si 0.966 3.034 20 H -0.275 1.275 21 H -0.274 1.274 22 H -0.271 1.271 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.052 0.948 26 H 0.230 0.770 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 17.199 -8.330 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.256 4.256 3 C -0.069 4.069 4 N -0.170 5.170 5 H 0.304 0.696 6 N -0.141 5.141 7 C -0.110 4.110 8 C 0.066 3.934 9 O -0.275 6.275 10 C 0.321 3.679 11 O -0.429 6.429 12 C 0.031 3.969 13 H 0.065 0.935 14 C -0.177 4.177 15 C -0.575 4.575 16 H 0.076 0.924 17 C -0.178 4.178 18 N -0.549 5.549 19 Si 0.791 3.209 20 H -0.200 1.200 21 H -0.200 1.200 22 H -0.196 1.196 23 H 0.079 0.921 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.247 0.753 27 H 0.114 0.886 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.331 16.608 -8.448 18.778 hybrid contribution -0.401 -0.608 -0.075 0.732 sum 1.930 16.000 -8.522 18.231 Atomic orbital electron populations 1.20137 0.87927 1.03111 1.02147 1.20428 0.98606 0.90934 1.15596 1.23085 0.83198 1.01351 0.99238 1.46250 1.08754 1.04184 1.57779 0.69570 1.77217 1.20599 0.91483 1.24776 1.21676 0.91513 0.95128 1.02661 1.20980 1.01938 0.89059 0.81453 1.86612 1.78531 1.31010 1.31308 1.24882 0.70754 0.78210 0.94072 1.90476 1.48602 1.59292 1.44491 1.18704 0.98315 0.95334 0.84526 0.93513 1.21545 0.96873 0.96745 1.02491 1.21283 1.46742 0.95952 0.93543 0.92393 1.25663 0.94939 1.02586 0.94609 1.69973 1.48934 1.38192 0.97772 0.85384 0.78304 0.79194 0.78049 1.20019 1.19975 1.19645 0.92095 0.88903 0.92858 0.75342 0.88574 0.91065 0.93580 0.94771 0.90352 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 10.18 71.24 0.73 -0.76 16 2 C -0.24 -5.80 6.10 -20.14 -0.12 -5.92 16 3 C 0.08 1.27 11.90 83.54 0.99 2.27 16 4 N -0.46 -8.75 7.36 -57.59 -0.42 -9.18 16 5 H 0.46 4.98 8.96 -213.33 -1.91 3.07 16 6 N -0.31 -9.53 12.70 -47.39 -0.60 -10.13 16 7 C 0.06 1.72 6.86 43.10 0.30 2.02 16 8 C 0.14 5.05 5.84 71.24 0.42 5.47 16 9 O -0.36 -15.42 10.11 -51.41 -0.52 -15.94 16 10 C 0.48 23.50 7.25 71.24 0.52 24.02 16 11 O -0.54 -28.61 15.21 21.97 0.33 -28.28 16 12 C 0.05 2.68 2.74 -12.29 -0.03 2.64 16 13 H 0.05 2.62 8.14 -2.38 -0.02 2.60 16 14 C -0.12 -5.74 8.90 71.98 0.64 -5.10 16 15 C -0.54 -31.14 8.37 25.60 0.21 -30.92 16 16 H 0.06 3.52 6.76 -2.91 -0.02 3.50 16 17 C 0.02 1.21 5.30 84.65 0.45 1.66 16 18 N -0.91 -51.24 11.32 21.45 0.24 -51.00 16 19 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 24 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 1.16 7.26 -2.39 -0.02 1.14 16 26 H 0.23 1.13 8.06 -2.91 -0.02 1.11 16 27 H 0.10 3.17 7.25 -2.39 -0.02 3.15 16 28 H 0.07 2.60 8.13 -2.39 -0.02 2.58 16 29 H 0.05 1.96 8.11 -2.39 -0.02 1.94 16 30 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 4.07 6.07 -2.38 -0.01 4.06 16 32 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -71.36 282.47 4.38 -66.97 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -0.77 Total: 5.84 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 4.09 Total: -4.64 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -0.78 Total: -70.30 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -0.19 Total: -44.22 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -71.36 4.38 -66.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884575342.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.434 kcal (2) G-P(sol) polarization free energy of solvation -71.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds