Wall clock time and date at job start Sun Mar 29 2020 21:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86800 * 119.99753 * 2 1 4 4 H 1.48501 * 109.47078 * 239.99635 * 3 2 1 5 5 H 1.48499 * 109.47349 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46901 * 120.00037 * 3 2 1 7 7 C 1.40050 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99491 * 180.02562 * 7 2 1 9 9 C 1.46373 * 120.00232 * 0.02562 * 7 2 1 10 10 O 1.21685 * 119.99706 * 4.94181 * 9 7 2 11 11 N 1.34776 * 120.00106 * 184.93789 * 9 7 2 12 12 C 1.45690 * 119.61606 * 355.22184 * 11 9 7 13 13 C 1.51579 * 113.28132 * 225.58365 * 12 11 9 14 14 C 1.49718 * 113.57549 * 331.81446 * 13 12 11 15 15 O 1.21286 * 119.02317 * 197.70853 * 14 13 12 16 16 N 1.34014 * 121.95273 * 17.72990 * 14 13 12 17 17 C 1.46694 * 128.08406 * 158.09012 * 16 14 13 18 18 C 1.54634 * 107.10592 * 185.85580 * 17 16 14 19 19 C 1.55613 * 102.78525 * 20.96998 * 18 17 16 20 20 C 1.45389 * 119.44050 * 175.14451 * 11 9 7 21 21 H 1.08999 * 111.38044 * 257.34114 * 20 11 9 22 22 H 0.97003 * 120.00337 * 359.97438 * 1 2 3 23 23 H 1.09007 * 108.70141 * 104.64780 * 12 11 9 24 24 H 1.09002 * 108.70271 * 346.53174 * 12 11 9 25 25 H 1.09009 * 108.65935 * 92.87169 * 13 12 11 26 26 H 1.09007 * 108.66464 * 210.88187 * 13 12 11 27 27 H 1.09006 * 109.90511 * 305.22363 * 17 16 14 28 28 H 1.08999 * 109.90858 * 66.29512 * 17 16 14 29 29 H 1.09002 * 110.75341 * 139.29023 * 18 17 16 30 30 H 1.09000 * 110.75352 * 262.64668 * 18 17 16 31 31 H 1.09005 * 111.19039 * 80.85124 * 19 18 17 32 32 H 1.08996 * 111.19033 * 205.18571 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0017 10 8 0.0617 -2.4824 -0.0929 11 7 1.9452 -3.6456 0.0983 12 6 3.4020 -3.6403 0.1017 13 6 4.0072 -4.6926 -0.8061 14 6 3.1376 -5.8977 -0.9886 15 8 3.6319 -6.9213 -1.4118 16 7 1.8294 -5.8788 -0.6987 17 6 0.7776 -6.7674 -1.2046 18 6 -0.5701 -6.2244 -0.6753 19 6 -0.2362 -4.7420 -0.3399 20 6 1.2019 -4.8908 0.2029 21 1 1.1884 -5.2606 1.2281 22 1 -0.4851 0.8400 0.0004 23 1 3.7498 -3.8153 1.1199 24 1 3.7487 -2.6587 -0.2214 25 1 4.1932 -4.2455 -1.7827 26 1 4.9594 -5.0127 -0.3829 27 1 0.7783 -6.7603 -2.2947 28 1 0.9413 -7.7815 -0.8401 29 1 -1.3391 -6.2822 -1.4456 30 1 -0.8784 -6.7630 0.2208 31 1 -0.2571 -4.1210 -1.2356 32 1 -0.9073 -4.3502 0.4244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888168119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:16 Heat of formation + Delta-G solvation = -46.792765 kcal Electronic energy + Delta-G solvation = -17722.695778 eV Core-core repulsion = 14876.923817 eV Total energy + Delta-G solvation = -2845.771961 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.29928 -37.90769 -36.41702 -34.59999 -32.73636 -31.12841 -30.02448 -28.35605 -25.91997 -23.58164 -22.67376 -21.32521 -20.02554 -18.06187 -16.90680 -16.47191 -15.79974 -15.37621 -15.12393 -14.82263 -14.27442 -13.99033 -13.69325 -12.89366 -12.74469 -12.40032 -12.08618 -11.91223 -11.66251 -11.31694 -11.10747 -10.99053 -10.90693 -10.67975 -10.44672 -10.33072 -10.22265 -9.39833 -8.97760 -8.36661 -7.63949 -7.45140 -6.32534 -4.81332 2.84724 3.07187 3.13483 3.14218 3.36995 3.92996 4.23230 4.39383 4.79593 5.12937 5.26639 5.31411 5.36887 5.41184 5.60601 5.71424 5.78116 5.86773 6.00763 6.10242 6.20924 6.28349 6.37041 6.54510 6.82905 7.02124 7.30755 7.37252 7.85100 7.97093 8.10338 8.47661 8.87043 9.17475 10.37506 10.56867 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.033362 B = 0.008474 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.087396 B = 3303.418628 C = 4009.970164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.089 3.911 3 Si 0.908 3.092 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.557 3.443 10 O -0.563 6.563 11 N -0.643 5.643 12 C 0.120 3.880 13 C -0.150 4.150 14 C 0.542 3.458 15 O -0.564 6.564 16 N -0.630 5.630 17 C 0.117 3.883 18 C -0.150 4.150 19 C -0.094 4.094 20 C 0.359 3.641 21 H 0.069 0.931 22 H 0.271 0.729 23 H 0.046 0.954 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 -5.720 0.353 6.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.579 4.579 8 H 0.092 0.908 9 C 0.364 3.636 10 O -0.445 6.445 11 N -0.382 5.382 12 C -0.004 4.004 13 C -0.190 4.190 14 C 0.332 3.668 15 O -0.444 6.444 16 N -0.367 5.367 17 C -0.006 4.006 18 C -0.189 4.189 19 C -0.133 4.133 20 C 0.171 3.829 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.064 0.936 24 H 0.122 0.878 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.217 -6.160 0.068 6.547 hybrid contribution 0.643 0.750 -0.001 0.988 sum 2.861 -5.409 0.067 6.120 Atomic orbital electron populations 1.69974 1.07046 1.27727 1.34393 1.25713 0.94662 1.00343 0.92460 0.86423 0.79884 0.80918 0.79562 1.19193 1.20482 1.19175 1.20956 0.93629 0.89062 1.54236 0.90771 1.18242 0.87128 0.81851 0.76345 1.90614 1.13969 1.85343 1.54595 1.47834 1.04882 1.05884 1.79608 1.20823 0.82062 0.99871 0.97669 1.21693 0.99304 0.94430 1.03602 1.19839 0.81281 0.89123 0.76544 1.90645 1.73142 1.32697 1.47882 1.48829 1.06832 1.33560 1.47487 1.21770 0.86833 0.93377 0.98587 1.23079 0.95573 0.98877 1.01345 1.23029 0.93663 0.92463 1.04129 1.21637 0.90823 0.78828 0.91617 0.91321 0.91828 0.93575 0.87828 0.88181 0.88292 0.92035 0.92036 0.90297 0.91117 0.88784 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.18 11.84 55.55 0.66 -20.52 16 2 C 0.09 2.30 5.50 -17.37 -0.10 2.20 16 3 Si 0.91 18.82 29.56 -169.99 -5.02 13.80 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 7 C -0.54 -13.97 8.77 -35.63 -0.31 -14.28 16 8 H 0.07 1.73 5.70 -52.48 -0.30 1.43 16 9 C 0.56 14.39 7.38 -12.99 -0.10 14.30 16 10 O -0.56 -15.96 11.11 5.20 0.06 -15.90 16 11 N -0.64 -13.67 3.09 -172.15 -0.53 -14.21 16 12 C 0.12 2.12 6.22 -5.20 -0.03 2.09 16 13 C -0.15 -2.38 6.08 -29.07 -0.18 -2.55 16 14 C 0.54 10.20 7.69 -11.80 -0.09 10.11 16 15 O -0.56 -11.93 17.54 5.55 0.10 -11.83 16 16 N -0.63 -11.51 3.27 -167.86 -0.55 -12.06 16 17 C 0.12 1.84 7.08 -3.08 -0.02 1.82 16 18 C -0.15 -2.16 6.95 -24.48 -0.17 -2.33 16 19 C -0.09 -1.79 4.64 -24.59 -0.11 -1.90 16 20 C 0.36 6.88 4.18 -126.71 -0.53 6.35 16 21 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 22 H 0.27 6.89 8.29 -40.82 -0.34 6.55 16 23 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 24 H 0.10 1.85 5.30 -51.93 -0.28 1.57 16 25 H 0.10 1.51 8.14 -51.92 -0.42 1.09 16 26 H 0.10 1.33 8.14 -51.92 -0.42 0.91 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 2.10 6.79 -51.93 -0.35 1.74 16 32 H 0.09 1.88 7.41 -51.93 -0.38 1.50 16 LS Contribution 260.85 15.07 3.93 3.93 Total: -1.00 -31.50 260.85 -6.83 -38.33 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.83 Total: 2.66 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: -1.64 Total: 15.80 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.42 Total: -46.79 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: 0.16 Total: -27.73 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.50 -6.83 -38.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888168119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.462 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds