Wall clock time and date at job start Sun Mar 29 2020 21:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86800 * 119.99753 * 2 1 4 4 H 1.48501 * 109.47078 * 239.99635 * 3 2 1 5 5 H 1.48499 * 109.47349 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46901 * 120.00037 * 3 2 1 7 7 C 1.40050 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99491 * 180.02562 * 7 2 1 9 9 C 1.46373 * 120.00232 * 0.02562 * 7 2 1 10 10 O 1.21685 * 119.99706 * 4.94181 * 9 7 2 11 11 N 1.34776 * 120.00106 * 184.93789 * 9 7 2 12 12 C 1.45690 * 119.61606 * 355.22184 * 11 9 7 13 13 C 1.51579 * 113.28132 * 225.58365 * 12 11 9 14 14 C 1.49718 * 113.57549 * 331.81446 * 13 12 11 15 15 O 1.21286 * 119.02317 * 197.70853 * 14 13 12 16 16 N 1.34014 * 121.95273 * 17.72990 * 14 13 12 17 17 C 1.46694 * 128.08406 * 158.09012 * 16 14 13 18 18 C 1.54634 * 107.10592 * 185.85580 * 17 16 14 19 19 C 1.55613 * 102.78525 * 20.96998 * 18 17 16 20 20 C 1.45389 * 119.44050 * 175.14451 * 11 9 7 21 21 H 1.08999 * 111.38044 * 257.34114 * 20 11 9 22 22 H 0.97003 * 120.00337 * 359.97438 * 1 2 3 23 23 H 1.09007 * 108.70141 * 104.64780 * 12 11 9 24 24 H 1.09002 * 108.70271 * 346.53174 * 12 11 9 25 25 H 1.09009 * 108.65935 * 92.87169 * 13 12 11 26 26 H 1.09007 * 108.66464 * 210.88187 * 13 12 11 27 27 H 1.09006 * 109.90511 * 305.22363 * 17 16 14 28 28 H 1.08999 * 109.90858 * 66.29512 * 17 16 14 29 29 H 1.09002 * 110.75341 * 139.29023 * 18 17 16 30 30 H 1.09000 * 110.75352 * 262.64668 * 18 17 16 31 31 H 1.09005 * 111.19039 * 80.85124 * 19 18 17 32 32 H 1.08996 * 111.19033 * 205.18571 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0017 10 8 0.0617 -2.4824 -0.0929 11 7 1.9452 -3.6456 0.0983 12 6 3.4020 -3.6403 0.1017 13 6 4.0072 -4.6926 -0.8061 14 6 3.1376 -5.8977 -0.9886 15 8 3.6319 -6.9213 -1.4118 16 7 1.8294 -5.8788 -0.6987 17 6 0.7776 -6.7674 -1.2046 18 6 -0.5701 -6.2244 -0.6753 19 6 -0.2362 -4.7420 -0.3399 20 6 1.2019 -4.8908 0.2029 21 1 1.1884 -5.2606 1.2281 22 1 -0.4851 0.8400 0.0004 23 1 3.7498 -3.8153 1.1199 24 1 3.7487 -2.6587 -0.2214 25 1 4.1932 -4.2455 -1.7827 26 1 4.9594 -5.0127 -0.3829 27 1 0.7783 -6.7603 -2.2947 28 1 0.9413 -7.7815 -0.8401 29 1 -1.3391 -6.2822 -1.4456 30 1 -0.8784 -6.7630 0.2208 31 1 -0.2571 -4.1210 -1.2356 32 1 -0.9073 -4.3502 0.4244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888168119.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:16 Heat of formation + Delta-G solvation = -68.419055 kcal Electronic energy + Delta-G solvation = -17723.633564 eV Core-core repulsion = 14876.923817 eV Total energy + Delta-G solvation = -2846.709747 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81025 -39.59615 -37.99283 -36.23986 -34.67429 -32.68833 -31.42924 -29.95913 -27.71922 -25.11512 -24.10155 -22.83637 -21.68019 -19.62180 -18.55641 -18.01244 -17.60953 -16.92221 -16.60742 -16.28041 -15.89487 -15.61466 -15.14837 -14.41241 -14.33187 -13.92339 -13.74021 -13.37640 -13.22637 -13.06105 -12.71956 -12.49389 -12.33947 -12.23923 -12.03000 -11.93075 -11.68666 -10.91364 -10.87648 -9.82635 -9.51403 -9.22502 -8.24543 -6.81904 1.38870 1.44712 1.45621 1.57055 1.96266 2.24058 2.48005 2.62200 3.43057 3.58764 3.73515 3.94258 4.01323 4.10247 4.17232 4.28307 4.37456 4.56807 4.73173 4.83914 4.86322 4.97975 5.02924 5.16113 5.33177 5.41413 5.45267 5.69416 6.11821 6.26713 6.46343 6.90830 7.00065 7.34386 8.45311 8.66800 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.033362 B = 0.008474 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.087396 B = 3303.418628 C = 4009.970164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.035 3.965 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.566 4.566 8 H 0.096 0.904 9 C 0.543 3.457 10 O -0.600 6.600 11 N -0.647 5.647 12 C 0.117 3.883 13 C -0.141 4.141 14 C 0.535 3.465 15 O -0.590 6.590 16 N -0.633 5.633 17 C 0.111 3.889 18 C -0.129 4.129 19 C -0.091 4.091 20 C 0.356 3.644 21 H 0.083 0.917 22 H 0.274 0.726 23 H 0.066 0.934 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.130 0.870 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 -6.020 0.626 7.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.181 4.181 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.602 4.602 8 H 0.114 0.886 9 C 0.350 3.650 10 O -0.486 6.486 11 N -0.385 5.385 12 C -0.006 4.006 13 C -0.181 4.181 14 C 0.326 3.674 15 O -0.471 6.471 16 N -0.369 5.369 17 C -0.011 4.011 18 C -0.167 4.167 19 C -0.130 4.130 20 C 0.168 3.832 21 H 0.101 0.899 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.119 0.881 25 H 0.127 0.873 26 H 0.148 0.852 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.792 -6.498 0.344 7.532 hybrid contribution 0.142 0.760 -0.087 0.778 sum 3.934 -5.739 0.257 6.962 Atomic orbital electron populations 1.70136 1.09241 1.28953 1.36116 1.26834 0.95430 1.04497 0.91308 0.85192 0.78334 0.75396 0.80223 1.18110 1.20389 1.17799 1.21490 0.94917 0.89575 1.54266 0.88640 1.18546 0.86970 0.83369 0.76132 1.90594 1.15552 1.86496 1.55918 1.47689 1.06512 1.05541 1.78737 1.20998 0.79899 1.00451 0.99301 1.21681 0.99791 0.92733 1.03923 1.20330 0.81517 0.89554 0.75993 1.90635 1.73519 1.33750 1.49238 1.48924 1.07265 1.33436 1.47287 1.21975 0.86595 0.93820 0.98694 1.23005 0.95532 0.95172 1.03021 1.22709 0.93691 0.94927 1.01630 1.21742 0.90658 0.78357 0.92449 0.89939 0.91628 0.91615 0.88096 0.87311 0.85159 0.92105 0.90376 0.88495 0.88509 0.92851 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.47 11.84 21.84 0.26 -46.21 16 2 C 0.04 1.83 5.50 85.30 0.47 2.30 16 3 Si 0.99 38.24 29.56 68.60 2.03 40.27 16 4 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 5 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 7 C -0.57 -29.21 8.77 24.83 0.22 -29.00 16 8 H 0.10 4.34 5.70 -2.91 -0.02 4.32 16 9 C 0.54 28.61 7.38 86.36 0.64 29.25 16 10 O -0.60 -35.45 11.11 -4.30 -0.05 -35.50 16 11 N -0.65 -27.34 3.09 -816.77 -2.53 -29.87 16 12 C 0.12 3.91 6.22 86.07 0.54 4.44 16 13 C -0.14 -4.14 6.08 29.08 0.18 -3.97 16 14 C 0.54 19.17 7.69 87.47 0.67 19.84 16 15 O -0.59 -23.89 17.54 -3.05 -0.05 -23.94 16 16 N -0.63 -22.25 3.27 -803.81 -2.63 -24.88 16 17 C 0.11 3.29 7.08 86.90 0.61 3.90 16 18 C -0.13 -3.49 6.95 32.05 0.22 -3.27 16 19 C -0.09 -3.49 4.64 31.98 0.15 -3.34 16 20 C 0.36 13.44 4.18 130.00 0.54 13.99 16 21 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 22 H 0.27 14.31 8.29 -92.71 -0.77 13.55 16 23 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 24 H 0.10 3.42 5.30 -2.39 -0.01 3.41 16 25 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 26 H 0.13 3.04 8.14 -2.38 -0.02 3.02 16 27 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 2.48 6.79 -2.38 -0.02 2.46 16 32 H 0.07 3.09 7.41 -2.39 -0.02 3.07 16 Total: -1.00 -69.60 260.85 2.40 -67.20 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 1.13 Total: 18.79 kcal Atomic # 6 Polarization: 29.91 SS G_CDS: 4.24 Total: 34.14 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -4.89 Total: -100.96 kcal Atomic # 8 Polarization: -59.34 SS G_CDS: -0.10 Total: -59.44 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -69.60 2.40 -67.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888168119.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.221 kcal (2) G-P(sol) polarization free energy of solvation -69.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds