Wall clock time and date at job start Sun Mar 29 2020 22:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47247 * 2 1 4 4 C 1.34176 * 126.37356 * 89.99829 * 3 2 1 5 5 N 1.34624 * 107.78114 * 180.02562 * 4 3 2 6 6 C 1.30962 * 108.62159 * 0.02562 * 5 4 3 7 7 N 1.38646 * 125.70046 * 179.97438 * 6 5 4 8 8 C 1.34775 * 119.99892 * 0.02562 * 7 6 5 9 9 O 1.21279 * 120.00152 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00317 * 179.97438 * 8 7 6 11 11 C 1.53000 * 109.47709 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47345 * 179.97438 * 11 10 8 13 13 H 1.08003 * 120.00405 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00062 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00061 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00174 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47235 * 89.99982 * 16 14 12 18 18 H 1.48504 * 109.46998 * 210.00344 * 16 14 12 19 19 H 1.48502 * 109.46971 * 330.00002 * 16 14 12 20 20 O 1.34195 * 108.60040 * 359.97438 * 6 5 4 21 21 H 1.09004 * 109.47111 * 59.99986 * 1 2 3 22 22 H 1.08997 * 109.47444 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47169 * 300.00674 * 1 2 3 24 24 H 1.09000 * 109.46760 * 239.99983 * 2 1 3 25 25 H 1.08999 * 109.46674 * 119.99858 * 2 1 3 26 26 H 1.07994 * 126.11401 * 0.04604 * 4 3 2 27 27 H 0.96992 * 120.00192 * 180.02562 * 7 6 5 28 28 H 1.08998 * 109.47251 * 300.00557 * 10 8 7 29 29 H 1.09004 * 109.46829 * 59.99765 * 10 8 7 30 30 H 1.09003 * 109.46670 * 300.00337 * 11 10 8 31 31 H 1.09000 * 109.46577 * 60.00053 * 11 10 8 32 32 H 0.97003 * 120.00007 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2976 2.1710 1.0803 5 7 2.7224 3.3742 0.6511 6 6 2.7218 3.3751 -0.6585 7 7 3.0961 4.4374 -1.4670 8 6 3.5056 5.5952 -0.9117 9 8 3.5462 5.7080 0.2951 10 6 3.9129 6.7498 -1.7904 11 6 4.3311 7.9336 -0.9160 12 6 4.7390 9.0878 -1.7947 13 1 4.7032 8.9874 -2.8695 14 6 5.1570 10.2726 -1.2267 15 7 5.2001 10.3952 0.0820 16 14 5.6620 11.7037 -2.3160 17 1 4.4756 12.5487 -2.6048 18 1 6.6912 12.5167 -1.6196 19 1 6.2208 11.1832 -3.5896 20 8 2.2985 2.1760 -1.0872 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.1899 1.8644 2.1102 27 1 3.0633 4.3474 -2.4322 28 1 4.7501 6.4492 -2.4203 29 1 3.0719 7.0422 -2.4192 30 1 3.4935 8.2339 -0.2865 31 1 5.1719 7.6414 -0.2870 32 1 5.4945 11.2286 0.4816 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889386822.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:38 Heat of formation + Delta-G solvation = -43.142207 kcal Electronic energy + Delta-G solvation = -16075.013968 eV Core-core repulsion = 13229.400307 eV Total energy + Delta-G solvation = -2845.613661 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.37205 -40.97931 -36.40690 -35.79098 -35.54859 -34.72650 -33.02375 -29.51020 -27.81520 -25.07596 -24.61971 -23.14645 -22.07084 -21.19532 -19.59845 -18.80993 -18.07401 -17.55142 -16.79157 -16.49977 -16.44627 -15.57866 -15.25731 -14.96488 -14.44862 -14.23344 -14.18050 -13.48932 -13.28726 -12.83339 -12.64150 -12.58275 -12.47658 -12.06273 -11.93287 -11.77140 -11.67692 -11.45005 -11.26685 -10.92929 -10.55314 -9.21165 -8.16775 -6.30802 0.30931 0.69310 1.39374 1.44793 1.47124 1.57973 1.94230 2.37730 2.46295 3.17042 3.43236 3.81889 3.94804 4.13368 4.17389 4.35545 4.46200 4.52143 4.62870 4.81204 5.00932 5.01617 5.10735 5.22324 5.35218 5.36960 5.52018 5.61257 5.85517 5.92980 6.16202 6.78949 6.88016 7.10700 7.39669 8.95972 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.085098 B = 0.003872 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.952807 B = 7230.058351 C = 7444.499592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C -0.052 4.052 4 C -0.046 4.046 5 N -0.518 5.518 6 C 0.397 3.603 7 N -0.608 5.608 8 C 0.515 3.485 9 O -0.520 6.520 10 C -0.104 4.104 11 C 0.038 3.962 12 C -0.540 4.540 13 H 0.082 0.918 14 C -0.008 4.008 15 N -0.938 5.938 16 Si 0.974 3.026 17 H -0.273 1.273 18 H -0.289 1.289 19 H -0.253 1.253 20 O -0.213 6.213 21 H 0.045 0.955 22 H 0.091 0.909 23 H 0.055 0.945 24 H 0.095 0.905 25 H 0.123 0.877 26 H 0.206 0.794 27 H 0.443 0.557 28 H 0.121 0.879 29 H 0.121 0.879 30 H -0.015 1.015 31 H -0.015 1.015 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 -21.600 -6.284 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.064 4.064 3 C -0.106 4.106 4 C -0.184 4.184 5 N -0.255 5.255 6 C 0.100 3.900 7 N -0.268 5.268 8 C 0.304 3.696 9 O -0.390 6.390 10 C -0.143 4.143 11 C 0.000 4.000 12 C -0.578 4.578 13 H 0.100 0.900 14 C -0.206 4.206 15 N -0.578 5.578 16 Si 0.798 3.202 17 H -0.198 1.198 18 H -0.215 1.215 19 H -0.177 1.177 20 O -0.101 6.101 21 H 0.065 0.935 22 H 0.110 0.890 23 H 0.075 0.925 24 H 0.113 0.887 25 H 0.141 0.859 26 H 0.223 0.777 27 H 0.284 0.716 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.003 0.997 31 H 0.004 0.996 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.819 -20.845 -4.984 22.815 hybrid contribution 0.129 0.479 -0.685 0.845 sum -7.690 -20.367 -5.669 22.496 Atomic orbital electron populations 1.21824 0.93205 1.03686 1.01990 1.20284 0.96632 0.83316 1.06167 1.24070 1.06604 0.97189 0.82703 1.23564 1.04022 0.88679 1.02095 1.71147 1.22887 1.24138 1.07327 1.21845 0.98567 0.82718 0.86854 1.42739 1.65393 1.08034 1.10680 1.22050 0.75249 0.82510 0.89763 1.90816 1.49920 1.81035 1.17222 1.21706 1.04435 0.90180 0.98013 1.18759 0.94752 0.92106 0.94343 1.21690 1.44121 0.97835 0.94186 0.90002 1.26145 0.95669 1.02386 0.96351 1.70187 1.48487 1.27204 1.11966 0.85311 0.77926 0.78141 0.78795 1.19812 1.21495 1.17668 1.84341 1.66353 1.21741 1.37625 0.93544 0.89018 0.92536 0.88663 0.85934 0.77731 0.71557 0.86069 0.86082 0.99661 0.99641 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.90 71.98 0.71 -0.88 16 2 C -0.03 -0.31 6.48 29.85 0.19 -0.12 16 3 C -0.05 -1.19 6.64 24.76 0.16 -1.03 16 4 C -0.05 -1.28 11.79 83.34 0.98 -0.30 16 5 N -0.52 -19.87 9.47 -313.65 -2.97 -22.84 16 6 C 0.40 13.21 8.98 178.94 1.61 14.82 16 7 N -0.61 -18.15 5.39 -423.80 -2.28 -20.44 16 8 C 0.52 20.23 7.79 87.66 0.68 20.91 16 9 O -0.52 -26.64 14.65 -3.03 -0.04 -26.68 16 10 C -0.10 -3.89 5.64 29.85 0.17 -3.72 16 11 C 0.04 2.06 4.26 29.85 0.13 2.19 16 12 C -0.54 -29.87 9.11 25.60 0.23 -29.63 16 13 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 14 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 15 N -0.94 -59.33 13.29 21.45 0.28 -59.05 16 16 Si 0.97 43.72 29.54 68.60 2.03 45.74 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 20 O -0.21 -5.76 10.80 -8.68 -0.09 -5.86 16 21 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 22 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.21 4.32 8.06 -2.91 -0.02 4.30 16 27 H 0.44 8.56 8.82 -92.71 -0.82 7.74 16 28 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 29 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 30 H -0.02 -0.93 8.10 -2.39 -0.02 -0.95 16 31 H -0.01 -0.92 8.10 -2.39 -0.02 -0.94 16 32 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -82.57 286.61 2.56 -80.00 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 0.31 Total: 6.87 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 5.33 Total: 2.25 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -4.97 Total: -102.32 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.14 Total: -32.54 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -82.57 2.56 -80.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889386822.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.859 kcal (2) G-P(sol) polarization free energy of solvation -82.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds