Wall clock time and date at job start Sun Mar 29 2020 22:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42910 * 113.28043 * 101.11433 * 3 2 1 5 5 C 1.53490 * 114.20503 * 234.17729 * 3 2 1 6 6 N 1.47070 * 87.98468 * 87.71989 * 5 3 2 7 7 C 1.34775 * 136.05852 * 207.08038 * 6 5 3 8 8 O 1.21587 * 119.99648 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00187 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00241 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46866 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99834 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00496 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47325 * 59.99531 * 16 14 12 18 18 H 1.48496 * 109.47425 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47183 * 299.99726 * 16 14 12 20 20 C 1.47068 * 87.88069 * 27.34439 * 6 5 3 21 21 H 4.45847 * 5.11284 * 179.97438 * 4 1 2 22 22 H 0.96700 * 113.99894 * 313.06907 * 4 3 2 23 23 H 1.08996 * 113.47203 * 332.94023 * 5 3 2 24 24 H 1.09005 * 113.52215 * 202.50777 * 5 3 2 25 25 H 0.97010 * 119.99849 * 0.02562 * 9 7 6 26 26 H 1.09000 * 109.47175 * 60.00333 * 10 9 7 27 27 H 1.09001 * 109.47297 * 299.99840 * 10 9 7 28 28 H 1.08993 * 109.46955 * 300.00226 * 11 10 9 29 29 H 1.09000 * 109.47050 * 60.00054 * 11 10 9 30 30 H 0.96992 * 120.00032 * 180.02562 * 15 14 12 31 31 H 1.08995 * 113.47119 * 87.44240 * 20 6 5 32 32 H 1.09005 * 113.46000 * 217.87880 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.2108 0.2540 -1.2881 5 6 3.2750 0.8203 1.1351 6 7 3.2010 -0.3841 1.9759 7 6 3.1040 -0.6423 3.2951 8 8 3.0576 0.2748 4.0921 9 7 3.0575 -1.9167 3.7308 10 6 2.9516 -2.1974 5.1647 11 6 2.9181 -3.7108 5.3871 12 6 2.8085 -3.9994 6.8621 13 1 2.7673 -3.1849 7.5702 14 6 2.7619 -5.3033 7.3079 15 7 2.8125 -6.2952 6.4458 16 14 2.6253 -5.6611 9.1362 17 1 1.3777 -5.0556 9.6672 18 1 2.5929 -7.1299 9.3521 19 1 3.7961 -5.0821 9.8427 20 6 3.2861 -1.1829 0.7440 21 1 -1.0500 -0.0002 0.0001 22 1 2.8123 -0.2639 -2.0010 23 1 2.6406 1.6342 1.4860 24 1 4.2954 1.1417 0.9260 25 1 3.0942 -2.6484 3.0948 26 1 2.0367 -1.7520 5.5555 27 1 3.8120 -1.7734 5.6825 28 1 2.0580 -4.1351 4.8693 29 1 3.8333 -4.1558 4.9965 30 1 2.7794 -7.2124 6.7593 31 1 4.3093 -1.3903 0.4309 32 1 2.6610 -2.0757 0.7616 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894130487.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:11 Heat of formation + Delta-G solvation = 18.318432 kcal Electronic energy + Delta-G solvation = -16152.669482 eV Core-core repulsion = 13309.720955 eV Total energy + Delta-G solvation = -2842.948527 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.79022 -38.52175 -35.76918 -34.77214 -32.97985 -32.78375 -30.09802 -28.23636 -26.34228 -24.65341 -23.02677 -20.97242 -20.06219 -18.97439 -17.86797 -16.91680 -16.45945 -15.94289 -15.52454 -14.72699 -14.66528 -14.40499 -13.89057 -13.41594 -13.20376 -13.07426 -12.57967 -12.26887 -11.79593 -11.22129 -11.18262 -11.01888 -10.93117 -10.64851 -10.32509 -10.16919 -9.93996 -9.57058 -9.28592 -8.88052 -8.47596 -8.24954 -6.09099 -4.11906 2.27364 2.34622 2.64397 3.31846 3.35436 3.39074 3.44518 3.64017 3.92837 4.18890 4.28760 4.44628 4.94882 5.16266 5.23434 5.27970 5.32849 5.42085 5.58038 5.73181 6.32352 6.38349 6.75453 6.96887 7.10793 7.22732 7.37674 7.56411 7.62389 7.89647 8.24436 8.35352 8.90448 8.96011 9.52804 11.02599 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.044049 B = 0.004251 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.510096 B = 6584.967991 C = 6733.269108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.207 4.207 3 C 0.202 3.798 4 O -0.531 6.531 5 C 0.147 3.853 6 N -0.664 5.664 7 C 0.736 3.264 8 O -0.589 6.589 9 N -0.733 5.733 10 C 0.140 3.860 11 C 0.014 3.986 12 C -0.521 4.521 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.085 3.915 21 H 0.224 0.776 22 H 0.387 0.613 23 H 0.086 0.914 24 H 0.099 0.901 25 H 0.393 0.607 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.262 0.738 31 H 0.101 0.899 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.369 9.209 -16.716 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.207 4.207 3 C 0.159 3.841 4 O -0.336 6.336 5 C 0.023 3.977 6 N -0.407 5.407 7 C 0.439 3.561 8 O -0.467 6.467 9 N -0.386 5.386 10 C 0.017 3.983 11 C -0.024 4.024 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.039 4.039 21 H 0.241 0.759 22 H 0.236 0.764 23 H 0.104 0.896 24 H 0.117 0.883 25 H 0.226 0.774 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.047 10.038 -15.483 18.482 hybrid contribution -0.581 -1.141 0.292 1.313 sum -1.628 8.897 -15.191 17.679 Atomic orbital electron populations 1.25057 0.95855 0.98603 0.97272 1.22432 0.93471 1.02104 1.02739 1.19030 0.82913 0.97885 0.84247 1.86593 1.62197 1.68677 1.16148 1.22713 1.01467 0.89750 0.83739 1.48191 1.79309 1.10121 1.03087 1.15218 0.77709 0.84257 0.78882 1.90908 1.58999 1.44594 1.52202 1.45480 1.77933 1.04660 1.10492 1.21652 1.00648 0.99907 0.76044 1.19322 0.97816 0.87529 0.97719 1.21009 1.51113 0.92227 0.91662 0.92228 1.24990 0.94978 0.96205 0.98066 1.69948 1.50281 0.99110 1.34051 0.86556 0.78837 0.77034 0.85015 1.20104 1.21248 1.20082 1.23696 1.01688 0.96048 0.82453 0.75936 0.76444 0.89565 0.88329 0.77394 0.92674 0.92609 0.95990 0.95938 0.92800 0.88155 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 19.25 29.55 0.57 -0.87 16 2 C -0.21 -2.25 12.66 -37.12 -0.47 -2.72 16 3 C 0.20 2.02 2.01 -92.76 -0.19 1.84 16 4 O -0.53 -4.35 13.53 -35.23 -0.48 -4.82 16 5 C 0.15 1.76 8.01 -8.52 -0.07 1.69 16 6 N -0.66 -9.69 3.57 -190.88 -0.68 -10.37 16 7 C 0.74 14.09 8.79 -86.93 -0.76 13.32 16 8 O -0.59 -13.57 17.12 5.29 0.09 -13.48 16 9 N -0.73 -13.84 5.56 -65.22 -0.36 -14.20 16 10 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 11 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 12 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 13 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 16 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C 0.09 0.89 7.71 -8.38 -0.06 0.83 16 21 H 0.22 1.34 7.80 -54.09 -0.42 0.92 16 22 H 0.39 1.62 9.01 45.56 0.41 2.03 16 23 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 24 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.39 6.53 8.19 -40.82 -0.33 6.19 16 26 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 LS Contribution 293.73 15.07 4.43 4.43 Total: -1.00 -34.46 293.73 -6.11 -40.57 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -3.27 Total: 2.88 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.56 Total: 4.04 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.31 Total: -50.07 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.39 Total: -18.30 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.46 -6.11 -40.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130487.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.892 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds