Wall clock time and date at job start Sun Mar 29 2020 22:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42910 * 113.28043 * 101.11433 * 3 2 1 5 5 C 1.53490 * 114.20503 * 234.17729 * 3 2 1 6 6 N 1.47070 * 87.98468 * 87.71989 * 5 3 2 7 7 C 1.34775 * 136.05852 * 207.08038 * 6 5 3 8 8 O 1.21587 * 119.99648 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00187 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00241 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46866 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99834 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00496 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47325 * 59.99531 * 16 14 12 18 18 H 1.48496 * 109.47425 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47183 * 299.99726 * 16 14 12 20 20 C 1.47068 * 87.88069 * 27.34439 * 6 5 3 21 21 H 4.45847 * 5.11284 * 179.97438 * 4 1 2 22 22 H 0.96700 * 113.99894 * 313.06907 * 4 3 2 23 23 H 1.08996 * 113.47203 * 332.94023 * 5 3 2 24 24 H 1.09005 * 113.52215 * 202.50777 * 5 3 2 25 25 H 0.97010 * 119.99849 * 0.02562 * 9 7 6 26 26 H 1.09000 * 109.47175 * 60.00333 * 10 9 7 27 27 H 1.09001 * 109.47297 * 299.99840 * 10 9 7 28 28 H 1.08993 * 109.46955 * 300.00226 * 11 10 9 29 29 H 1.09000 * 109.47050 * 60.00054 * 11 10 9 30 30 H 0.96992 * 120.00032 * 180.02562 * 15 14 12 31 31 H 1.08995 * 113.47119 * 87.44240 * 20 6 5 32 32 H 1.09005 * 113.46000 * 217.87880 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.2108 0.2540 -1.2881 5 6 3.2750 0.8203 1.1351 6 7 3.2010 -0.3841 1.9759 7 6 3.1040 -0.6423 3.2951 8 8 3.0576 0.2748 4.0921 9 7 3.0575 -1.9167 3.7308 10 6 2.9516 -2.1974 5.1647 11 6 2.9181 -3.7108 5.3871 12 6 2.8085 -3.9994 6.8621 13 1 2.7673 -3.1849 7.5702 14 6 2.7619 -5.3033 7.3079 15 7 2.8125 -6.2952 6.4458 16 14 2.6253 -5.6611 9.1362 17 1 1.3777 -5.0556 9.6672 18 1 2.5929 -7.1299 9.3521 19 1 3.7961 -5.0821 9.8427 20 6 3.2861 -1.1829 0.7440 21 1 -1.0500 -0.0002 0.0001 22 1 2.8123 -0.2639 -2.0010 23 1 2.6406 1.6342 1.4860 24 1 4.2954 1.1417 0.9260 25 1 3.0942 -2.6484 3.0948 26 1 2.0367 -1.7520 5.5555 27 1 3.8120 -1.7734 5.6825 28 1 2.0580 -4.1351 4.8693 29 1 3.8333 -4.1558 4.9965 30 1 2.7794 -7.2124 6.7593 31 1 4.3093 -1.3903 0.4309 32 1 2.6610 -2.0757 0.7616 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894130487.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:10 Heat of formation + Delta-G solvation = -8.750761 kcal Electronic energy + Delta-G solvation = -16153.843291 eV Core-core repulsion = 13309.720955 eV Total energy + Delta-G solvation = -2844.122336 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.86193 -39.86619 -36.73231 -36.44910 -34.82386 -33.71053 -31.85273 -29.59135 -27.29208 -26.49674 -24.11723 -22.83583 -21.31493 -19.91566 -19.04322 -18.50094 -17.73052 -17.31196 -16.73408 -16.52508 -15.90799 -15.76472 -15.23660 -14.80262 -14.57648 -14.25045 -14.07086 -13.54006 -13.24143 -12.93180 -12.65463 -12.52310 -12.25977 -11.98320 -11.74357 -11.67400 -11.54180 -11.29808 -10.86208 -10.60720 -10.30830 -9.67118 -8.24175 -6.34799 1.25161 1.42870 1.44931 1.53094 1.55560 1.67068 2.01928 2.40606 2.88342 2.92175 3.10702 3.16403 3.47456 4.09977 4.21816 4.40824 4.43582 4.47837 4.50247 4.58808 4.66801 4.82575 5.01315 5.25544 5.47863 5.56499 5.77633 6.08777 6.16948 6.49183 6.64719 6.77720 6.91066 7.34523 7.45736 8.87684 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.044049 B = 0.004251 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.510096 B = 6584.967991 C = 6733.269108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.246 4.246 3 C 0.221 3.779 4 O -0.530 6.530 5 C 0.137 3.863 6 N -0.668 5.668 7 C 0.734 3.266 8 O -0.636 6.636 9 N -0.728 5.728 10 C 0.160 3.840 11 C 0.026 3.974 12 C -0.548 4.548 13 H 0.059 0.941 14 C 0.009 3.991 15 N -0.926 5.926 16 Si 0.966 3.034 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.268 1.268 20 C 0.086 3.914 21 H 0.252 0.748 22 H 0.406 0.594 23 H 0.075 0.925 24 H 0.117 0.883 25 H 0.405 0.595 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.008 0.992 29 H 0.009 0.991 30 H 0.266 0.734 31 H 0.124 0.876 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 9.144 -17.534 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.247 4.247 3 C 0.178 3.822 4 O -0.338 6.338 5 C 0.014 3.986 6 N -0.409 5.409 7 C 0.436 3.564 8 O -0.518 6.518 9 N -0.382 5.382 10 C 0.036 3.964 11 C -0.012 4.012 12 C -0.587 4.587 13 H 0.078 0.922 14 C -0.190 4.190 15 N -0.566 5.566 16 Si 0.790 3.210 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.193 1.193 20 C -0.036 4.036 21 H 0.268 0.732 22 H 0.258 0.742 23 H 0.093 0.907 24 H 0.135 0.865 25 H 0.240 0.760 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.142 0.858 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.237 9.965 -16.396 19.227 hybrid contribution -0.547 -1.088 0.400 1.282 sum -1.784 8.877 -15.996 18.381 Atomic orbital electron populations 1.25890 0.96792 0.97076 0.95971 1.22855 0.94269 1.03503 1.04038 1.18574 0.82570 0.96389 0.84634 1.86555 1.62227 1.69165 1.15878 1.22993 1.02668 0.88983 0.83976 1.48105 1.77624 1.12672 1.02472 1.15255 0.77540 0.83396 0.80159 1.90864 1.61028 1.45687 1.54181 1.45155 1.78235 1.05406 1.09371 1.21149 0.99651 0.97528 0.78031 1.19117 0.96367 0.89251 0.96461 1.21422 1.51488 0.92697 0.93057 0.92239 1.25859 0.94341 0.95934 1.02861 1.70051 1.50810 0.99552 1.36171 0.85487 0.79138 0.77115 0.79244 1.19356 1.20503 1.19337 1.23991 1.03376 0.96249 0.80031 0.73213 0.74199 0.90651 0.86517 0.76007 0.93742 0.93580 0.97338 0.97238 0.92497 0.85804 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 19.25 74.32 1.43 -0.98 16 2 C -0.25 -4.92 12.66 31.13 0.39 -4.53 16 3 C 0.22 4.01 2.01 -12.18 -0.02 3.99 16 4 O -0.53 -7.27 13.53 -148.98 -2.02 -9.28 16 5 C 0.14 3.12 8.01 83.17 0.67 3.79 16 6 N -0.67 -18.88 3.57 -876.57 -3.13 -22.01 16 7 C 0.73 28.11 8.79 179.06 1.57 29.68 16 8 O -0.64 -29.82 17.12 -3.99 -0.07 -29.88 16 9 N -0.73 -27.55 5.56 -478.53 -2.66 -30.21 16 10 C 0.16 7.23 5.61 86.38 0.48 7.71 16 11 C 0.03 1.31 5.09 29.85 0.15 1.46 16 12 C -0.55 -30.92 9.11 25.60 0.23 -30.69 16 13 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 14 C 0.01 0.50 5.46 84.65 0.46 0.96 16 15 N -0.93 -54.34 13.29 21.45 0.28 -54.06 16 16 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 C 0.09 1.62 7.71 83.26 0.64 2.26 16 21 H 0.25 2.37 7.80 -4.42 -0.03 2.33 16 22 H 0.41 2.23 9.01 -74.06 -0.67 1.56 16 23 H 0.07 1.87 8.10 -2.39 -0.02 1.85 16 24 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 25 H 0.40 13.28 8.19 -92.70 -0.76 12.52 16 26 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.09 1.57 8.12 -2.38 -0.02 1.56 16 Total: -1.00 -73.87 293.73 0.17 -73.70 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -0.29 Total: 12.37 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 6.02 Total: 13.66 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -5.50 Total: -106.28 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -2.08 Total: -39.16 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -73.87 0.17 -73.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894130487.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.948 kcal (2) G-P(sol) polarization free energy of solvation -73.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds