Wall clock time and date at job start Sun Mar 29 2020 21:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 119.99693 * 2 1 4 4 H 1.48501 * 109.47565 * 270.00260 * 3 2 1 5 5 H 1.48501 * 109.47256 * 30.00346 * 3 2 1 6 6 H 1.48498 * 109.46871 * 150.00119 * 3 2 1 7 7 C 1.38950 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99783 * 205.39085 * 7 2 1 9 9 N 1.37097 * 120.00216 * 25.39204 * 7 2 1 10 10 C 1.34777 * 119.99602 * 40.80208 * 9 7 2 11 11 O 1.21291 * 120.00817 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99869 * 180.02562 * 10 9 7 13 13 H 1.08997 * 115.55296 * 61.85566 * 12 10 9 14 14 C 1.53075 * 117.53300 * 207.58049 * 12 10 9 15 15 C 1.53005 * 59.98558 * 107.46307 * 14 12 10 16 16 H 1.08995 * 117.49814 * 107.50054 * 15 14 12 17 17 C 1.50694 * 117.49659 * 252.49672 * 15 14 12 18 18 N 1.34779 * 119.99855 * 210.61752 * 17 15 14 19 19 O 1.21281 * 120.00234 * 30.62309 * 17 15 14 20 20 C 1.46495 * 119.99888 * 220.80622 * 9 7 2 21 21 C 1.52991 * 117.50065 * 4.39760 * 20 9 7 22 22 C 1.53001 * 117.49497 * 295.77300 * 20 9 7 23 23 H 0.96999 * 120.00325 * 4.60233 * 1 2 3 24 24 H 1.08999 * 117.51005 * 359.97438 * 14 12 10 25 25 H 1.08997 * 117.48932 * 214.95234 * 14 12 10 26 26 H 0.96994 * 119.99702 * 0.02562 * 18 17 15 27 27 H 0.97005 * 119.99509 * 179.72828 * 18 17 15 28 28 H 1.09000 * 115.54844 * 150.11382 * 20 9 7 29 29 H 1.08998 * 117.50373 * 0.02562 * 21 20 9 30 30 H 1.09008 * 117.49894 * 145.02468 * 21 20 9 31 31 H 1.08998 * 117.49841 * 214.97897 * 22 20 9 32 32 H 1.08995 * 117.49880 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0107 -1.2486 0.4005 9 7 1.4228 -2.3331 -0.5102 10 6 0.6898 -2.2613 -1.6388 11 8 0.5489 -1.1974 -2.2041 12 6 0.0450 -3.5031 -2.1988 13 1 -0.6901 -3.9832 -1.5529 14 6 -0.2011 -3.5532 -3.7088 15 6 0.9045 -4.4072 -3.0848 16 1 0.7350 -5.4820 -3.0215 17 6 2.3307 -3.9874 -3.3312 18 7 3.3068 -4.9153 -3.3830 19 8 2.6001 -2.8147 -3.4829 20 6 1.5933 -3.6182 0.1722 21 6 2.3490 -3.6169 1.5024 22 6 3.0083 -4.1951 0.2486 23 1 -0.4850 0.8373 -0.0674 24 1 0.1030 -2.6877 -4.2975 25 1 -1.0981 -4.0662 -4.0556 26 1 3.0913 -5.8532 -3.2620 27 1 4.2243 -4.6454 -3.5455 28 1 0.7682 -4.3218 0.0623 29 1 2.7191 -2.6599 1.8702 30 1 2.0210 -4.3199 2.2683 31 1 3.1140 -5.2784 0.1896 32 1 3.8122 -3.6187 -0.2092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900359772.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:03 Heat of formation + Delta-G solvation = -32.588689 kcal Electronic energy + Delta-G solvation = -17900.323320 eV Core-core repulsion = 15055.167294 eV Total energy + Delta-G solvation = -2845.156026 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.22963 -39.71160 -37.86625 -36.55588 -34.64407 -34.44670 -32.71956 -27.67762 -25.66555 -24.40348 -23.06653 -22.62043 -21.23741 -20.55362 -18.96186 -17.94376 -17.82101 -17.07073 -16.57825 -16.11534 -15.80872 -15.51146 -15.26791 -14.86141 -14.30283 -14.04443 -13.77543 -13.14659 -12.89453 -12.71518 -12.62481 -12.23154 -12.08216 -11.69412 -11.44364 -11.36360 -11.18141 -10.88819 -10.67359 -10.48555 -9.85830 -8.99463 -8.19790 -5.90450 1.28933 1.41071 1.42189 1.53092 2.30860 2.49183 2.65295 2.95722 3.11171 3.21871 3.45393 3.90686 3.94104 4.00834 4.18530 4.26089 4.32216 4.46046 4.52036 4.87776 4.89557 4.91175 5.07728 5.22826 5.32124 5.46702 5.50934 6.03729 6.20595 6.65730 7.06783 7.30238 7.57325 7.79386 8.48155 8.85875 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.011150 C = 0.009736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.659626 B = 2510.676577 C = 2875.154025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.029 3.971 3 Si 0.949 3.051 4 H -0.301 1.301 5 H -0.276 1.276 6 H -0.256 1.256 7 C -0.349 4.349 8 H 0.068 0.932 9 N -0.438 5.438 10 C 0.506 3.494 11 O -0.588 6.588 12 C -0.160 4.160 13 H 0.148 0.852 14 C -0.124 4.124 15 C -0.152 4.152 16 H 0.182 0.818 17 C 0.528 3.472 18 N -0.829 5.829 19 O -0.582 6.582 20 C 0.052 3.948 21 C -0.177 4.177 22 C -0.174 4.174 23 H 0.257 0.743 24 H 0.065 0.935 25 H 0.151 0.849 26 H 0.419 0.581 27 H 0.403 0.597 28 H 0.132 0.868 29 H 0.072 0.928 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 -17.713 -2.487 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.177 4.177 3 Si 0.775 3.225 4 H -0.228 1.228 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.476 4.476 8 H 0.085 0.915 9 N -0.158 5.158 10 C 0.295 3.705 11 O -0.469 6.469 12 C -0.181 4.181 13 H 0.166 0.834 14 C -0.161 4.161 15 C -0.173 4.173 16 H 0.199 0.801 17 C 0.313 3.687 18 N -0.393 5.393 19 O -0.461 6.461 20 C -0.053 4.053 21 C -0.215 4.215 22 C -0.212 4.212 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.169 0.831 26 H 0.251 0.749 27 H 0.234 0.766 28 H 0.149 0.851 29 H 0.091 0.909 30 H 0.139 0.861 31 H 0.149 0.851 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.289 -16.275 -2.747 16.664 hybrid contribution 0.688 1.214 -0.017 1.396 sum 2.977 -15.061 -2.765 15.599 Atomic orbital electron populations 1.70003 1.07730 1.27714 1.44753 1.25750 0.95234 1.01994 0.94682 0.85634 0.79586 0.80191 0.77061 1.22815 1.20176 1.17964 1.18905 0.97515 0.88075 1.43137 0.91478 1.42816 1.47127 1.05653 1.20230 1.19630 0.81568 0.88945 0.80361 1.90459 1.62529 1.32996 1.60914 1.22234 1.02891 0.97065 0.95943 0.83426 1.22975 0.99478 1.00452 0.93237 1.22469 0.88834 1.00662 1.05370 0.80099 1.20134 0.88166 0.85197 0.75182 1.43454 1.10017 1.10695 1.75178 1.90892 1.84232 1.20529 1.50442 1.21970 0.95721 0.88788 0.98844 1.23121 1.04358 1.02415 0.91557 1.23216 0.95711 1.01001 1.01306 0.93407 0.91646 0.83107 0.74873 0.76635 0.85107 0.90943 0.86063 0.85106 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -55.86 11.98 21.66 0.26 -55.60 16 2 C 0.03 1.82 4.13 84.93 0.35 2.17 16 3 Si 0.95 50.14 29.63 68.60 2.03 52.17 16 4 H -0.30 -16.89 7.11 99.48 0.71 -16.18 16 5 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.35 -20.85 8.00 84.04 0.67 -20.17 16 8 H 0.07 3.97 7.19 -2.91 -0.02 3.94 16 9 N -0.44 -23.05 2.86 -613.15 -1.75 -24.80 16 10 C 0.51 27.32 4.57 87.66 0.40 27.73 16 11 O -0.59 -38.88 14.17 -1.56 -0.02 -38.90 16 12 C -0.16 -5.97 4.63 -11.51 -0.05 -6.02 16 13 H 0.15 4.54 7.82 -2.39 -0.02 4.52 16 14 C -0.12 -3.98 9.59 30.62 0.29 -3.69 16 15 C -0.15 -4.17 6.19 -11.54 -0.07 -4.24 16 16 H 0.18 2.58 8.14 -2.39 -0.02 2.56 16 17 C 0.53 17.74 7.54 87.65 0.66 18.40 16 18 N -0.83 -17.22 8.87 -173.53 -1.54 -18.76 16 19 O -0.58 -28.69 15.61 -1.53 -0.02 -28.72 16 20 C 0.05 2.00 5.93 44.99 0.27 2.27 16 21 C -0.18 -6.17 9.79 30.59 0.30 -5.87 16 22 C -0.17 -5.49 10.34 30.60 0.32 -5.17 16 23 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 24 H 0.06 2.74 7.78 -2.39 -0.02 2.72 16 25 H 0.15 3.28 8.14 -2.39 -0.02 3.26 16 26 H 0.42 4.59 8.83 -92.71 -0.82 3.77 16 27 H 0.40 8.16 8.93 -92.70 -0.83 7.33 16 28 H 0.13 4.18 7.07 -2.39 -0.02 4.16 16 29 H 0.07 3.03 6.68 -2.39 -0.02 3.02 16 30 H 0.12 3.27 8.14 -2.38 -0.02 3.25 16 31 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -92.99 278.44 1.60 -91.38 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.48 Total: 17.83 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 3.14 Total: 5.40 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -3.03 Total: -99.16 kcal Atomic # 8 Polarization: -67.57 SS G_CDS: -0.05 Total: -67.62 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.03 Total: 52.17 kcal Total: -92.99 1.60 -91.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900359772.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.793 kcal (2) G-P(sol) polarization free energy of solvation -92.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds