Wall clock time and date at job start Sun Mar 29 2020 22:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46963 * 2 1 4 4 C 1.53001 * 109.47545 * 240.00562 * 2 1 3 5 5 C 1.50694 * 109.47451 * 120.00015 * 2 1 3 6 6 C 1.39627 * 126.05402 * 75.00236 * 5 2 1 7 7 C 1.38550 * 105.34838 * 180.02562 * 6 5 2 8 8 C 1.46936 * 126.90233 * 179.97438 * 7 6 5 9 9 O 1.21597 * 119.99420 * 359.97438 * 8 7 6 10 10 O 1.34822 * 120.00414 * 179.72536 * 8 7 6 11 11 C 1.34843 * 117.00137 * 180.02562 * 10 8 7 12 12 H 1.07995 * 119.99935 * 359.97438 * 11 10 8 13 13 C 1.38810 * 119.99938 * 179.97438 * 11 10 8 14 14 N 1.31417 * 119.99898 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00102 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47142 * 59.99664 * 15 13 11 17 17 H 1.48500 * 109.47336 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47018 * 300.00178 * 15 13 11 19 19 N 1.36671 * 106.20114 * 0.22627 * 7 6 5 20 20 H 0.96999 * 125.20184 * 179.78015 * 19 7 6 21 21 N 1.28444 * 109.60218 * 359.61260 * 19 7 6 22 22 H 1.08997 * 109.47212 * 299.99971 * 1 2 3 23 23 H 1.08999 * 109.47316 * 60.00208 * 1 2 3 24 24 H 1.09009 * 109.46842 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47144 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.46935 * 300.00026 * 3 2 1 27 27 H 1.08997 * 109.47133 * 59.99980 * 3 2 1 28 28 H 1.09009 * 109.46742 * 299.99684 * 4 2 1 29 29 H 1.08999 * 109.47442 * 59.99307 * 4 2 1 30 30 H 1.08995 * 109.47794 * 179.97438 * 4 2 1 31 31 H 1.07993 * 127.33133 * 359.97438 * 6 5 2 32 32 H 0.97001 * 119.99804 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 2.0309 -2.0907 1.4405 7 6 2.5820 -2.2707 2.6989 8 6 2.8029 -3.5480 3.3909 9 8 2.4889 -4.5926 2.8536 10 8 3.3582 -3.5620 4.6193 11 6 3.5337 -4.7671 5.1982 12 1 3.2332 -5.6647 4.6782 13 6 4.1005 -4.8540 6.4623 14 7 4.4666 -3.7617 7.0947 15 14 4.3430 -6.5235 7.2645 16 1 5.2314 -7.3566 6.4149 17 1 4.9619 -6.3446 8.6024 18 1 3.0277 -7.1965 7.4140 19 7 2.8736 -1.0212 3.1697 20 1 3.2693 -0.8276 4.0339 21 7 2.5469 -0.1427 2.2915 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6768 -1.7489 -1.2493 29 1 1.6767 -0.2073 -2.1393 30 1 3.1300 -0.7207 -1.2496 31 1 1.6752 -2.8555 0.7660 32 1 4.8631 -3.8225 7.9779 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919323383.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:32 Heat of formation + Delta-G solvation = -26.589980 kcal Electronic energy + Delta-G solvation = -16599.861797 eV Core-core repulsion = 13754.965895 eV Total energy + Delta-G solvation = -2844.895902 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.12755 -38.87969 -36.79926 -35.32339 -32.32877 -30.60332 -30.38012 -27.23373 -27.18433 -25.71320 -23.02354 -22.37485 -20.21522 -18.66921 -17.94260 -17.82477 -15.64681 -15.41102 -15.02359 -14.48520 -14.35963 -14.33457 -13.79127 -13.68285 -13.09882 -12.67616 -12.23740 -12.09654 -11.75947 -11.59208 -11.34200 -11.13916 -10.97629 -10.93172 -10.60712 -10.55381 -10.31605 -9.98782 -9.32979 -8.79789 -8.74454 -8.63841 -6.58568 -4.22945 1.77319 2.88415 3.10935 3.11662 3.15197 3.31389 3.78688 3.89770 4.34224 4.65703 4.89332 5.01351 5.07815 5.29325 5.54166 5.66579 5.68672 5.75341 5.85432 5.90323 5.95581 6.03714 6.13999 6.21595 6.38194 6.43396 6.65068 6.84382 7.22879 7.45383 7.76539 8.39485 8.52395 8.90166 9.62299 10.58870 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.057236 B = 0.005115 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.085231 B = 5472.834283 C = 5770.845217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.020 3.980 3 C -0.134 4.134 4 C -0.138 4.138 5 C 0.031 3.969 6 C -0.173 4.173 7 C 0.023 3.977 8 C 0.459 3.541 9 O -0.536 6.536 10 O -0.211 6.211 11 C -0.377 4.377 12 H 0.100 0.900 13 C 0.043 3.957 14 N -0.860 5.860 15 Si 0.949 3.051 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.268 1.268 19 N -0.369 5.369 20 H 0.453 0.547 21 N -0.279 5.279 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.158 0.842 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.226 7.556 -10.459 13.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.018 3.982 3 C -0.191 4.191 4 C -0.196 4.196 5 C -0.127 4.127 6 C -0.201 4.201 7 C -0.104 4.104 8 C 0.305 3.695 9 O -0.432 6.432 10 O -0.117 6.117 11 C -0.454 4.454 12 H 0.118 0.882 13 C -0.162 4.162 14 N -0.496 5.496 15 Si 0.773 3.227 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.193 1.193 19 N -0.085 5.085 20 H 0.299 0.701 21 N -0.113 5.113 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.176 0.824 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.916 8.343 -9.897 13.523 hybrid contribution 0.210 -1.512 0.702 1.680 sum -3.706 6.831 -9.194 12.039 Atomic orbital electron populations 1.21865 0.93620 1.02305 1.01720 1.18831 0.95182 0.94626 0.89564 1.21755 1.01298 0.94473 1.01573 1.21875 1.01407 1.00544 0.95813 1.21715 1.03873 0.91554 0.95577 1.21785 1.06394 0.96277 0.95648 1.21094 1.07635 0.85448 0.96270 1.19464 0.81026 0.86488 0.82531 1.90697 1.52697 1.32378 1.67390 1.83878 1.65552 1.35781 1.26512 1.21271 1.41643 0.82749 0.99691 0.88231 1.25408 0.95589 0.99847 0.95343 1.69948 1.37776 1.27966 1.13959 0.85656 0.79229 0.79757 0.78085 1.19261 1.20237 1.19267 1.43736 1.45438 1.02850 1.16460 0.70118 1.72998 1.17651 1.20351 1.00266 0.92523 0.92228 0.92195 0.92533 0.92761 0.92054 0.92048 0.92208 0.92416 0.82449 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.46 37.16 0.31 -1.18 16 2 C 0.02 0.24 0.96 -155.66 -0.15 0.09 16 3 C -0.13 -1.50 8.04 37.16 0.30 -1.20 16 4 C -0.14 -1.49 8.20 37.16 0.30 -1.18 16 5 C 0.03 0.49 5.65 -82.48 -0.47 0.03 16 6 C -0.17 -3.13 10.13 -38.95 -0.39 -3.52 16 7 C 0.02 0.49 7.21 -82.07 -0.59 -0.11 16 8 C 0.46 11.61 7.88 34.25 0.27 11.88 16 9 O -0.54 -14.60 16.17 -19.34 -0.31 -14.91 16 10 O -0.21 -5.88 9.75 -21.85 -0.21 -6.09 16 11 C -0.38 -10.87 9.65 30.94 0.30 -10.57 16 12 H 0.10 2.87 6.86 -52.49 -0.36 2.51 16 13 C 0.04 1.18 5.50 -17.52 -0.10 1.08 16 14 N -0.86 -24.21 13.67 55.49 0.76 -23.45 16 15 Si 0.95 20.64 29.55 -169.99 -5.02 15.62 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 N -0.37 -6.85 6.94 33.47 0.23 -6.61 16 20 H 0.45 7.82 8.96 -190.46 -1.71 6.11 16 21 N -0.28 -4.84 11.47 33.63 0.39 -4.45 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 28 H 0.06 0.66 7.60 -51.92 -0.39 0.26 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.16 2.64 7.79 -52.49 -0.41 2.23 16 32 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 285.13 15.07 4.30 4.30 Total: -1.00 -31.46 285.13 -5.47 -36.93 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.38 Total: 3.35 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -0.21 Total: -4.67 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 1.38 Total: -34.51 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.53 Total: -21.01 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.46 -5.47 -36.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919323383.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.340 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds