Wall clock time and date at job start Sun Mar 29 2020 22:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46963 * 2 1 4 4 C 1.53001 * 109.47545 * 240.00562 * 2 1 3 5 5 C 1.50694 * 109.47451 * 120.00015 * 2 1 3 6 6 C 1.39627 * 126.05402 * 75.00236 * 5 2 1 7 7 C 1.38550 * 105.34838 * 180.02562 * 6 5 2 8 8 C 1.46936 * 126.90233 * 179.97438 * 7 6 5 9 9 O 1.21597 * 119.99420 * 359.97438 * 8 7 6 10 10 O 1.34822 * 120.00414 * 179.72536 * 8 7 6 11 11 C 1.34843 * 117.00137 * 180.02562 * 10 8 7 12 12 H 1.07995 * 119.99935 * 359.97438 * 11 10 8 13 13 C 1.38810 * 119.99938 * 179.97438 * 11 10 8 14 14 N 1.31417 * 119.99898 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00102 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47142 * 59.99664 * 15 13 11 17 17 H 1.48500 * 109.47336 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47018 * 300.00178 * 15 13 11 19 19 N 1.36671 * 106.20114 * 0.22627 * 7 6 5 20 20 H 0.96999 * 125.20184 * 179.78015 * 19 7 6 21 21 N 1.28444 * 109.60218 * 359.61260 * 19 7 6 22 22 H 1.08997 * 109.47212 * 299.99971 * 1 2 3 23 23 H 1.08999 * 109.47316 * 60.00208 * 1 2 3 24 24 H 1.09009 * 109.46842 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47144 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.46935 * 300.00026 * 3 2 1 27 27 H 1.08997 * 109.47133 * 59.99980 * 3 2 1 28 28 H 1.09009 * 109.46742 * 299.99684 * 4 2 1 29 29 H 1.08999 * 109.47442 * 59.99307 * 4 2 1 30 30 H 1.08995 * 109.47794 * 179.97438 * 4 2 1 31 31 H 1.07993 * 127.33133 * 359.97438 * 6 5 2 32 32 H 0.97001 * 119.99804 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 2.0309 -2.0907 1.4405 7 6 2.5820 -2.2707 2.6989 8 6 2.8029 -3.5480 3.3909 9 8 2.4889 -4.5926 2.8536 10 8 3.3582 -3.5620 4.6193 11 6 3.5337 -4.7671 5.1982 12 1 3.2332 -5.6647 4.6782 13 6 4.1005 -4.8540 6.4623 14 7 4.4666 -3.7617 7.0947 15 14 4.3430 -6.5235 7.2645 16 1 5.2314 -7.3566 6.4149 17 1 4.9619 -6.3446 8.6024 18 1 3.0277 -7.1965 7.4140 19 7 2.8736 -1.0212 3.1697 20 1 3.2693 -0.8276 4.0339 21 7 2.5469 -0.1427 2.2915 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6768 -1.7489 -1.2493 29 1 1.6767 -0.2073 -2.1393 30 1 3.1300 -0.7207 -1.2496 31 1 1.6752 -2.8555 0.7660 32 1 4.8631 -3.8225 7.9779 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919323383.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:32 Heat of formation + Delta-G solvation = -46.691218 kcal Electronic energy + Delta-G solvation = -16600.733452 eV Core-core repulsion = 13754.965895 eV Total energy + Delta-G solvation = -2845.767557 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.61102 -40.92303 -37.82049 -37.41305 -34.42274 -32.12124 -31.84767 -28.25324 -28.02593 -27.66025 -24.80465 -23.64246 -21.84831 -20.34348 -19.92166 -19.27863 -17.55134 -17.11435 -16.51475 -16.27962 -16.07807 -15.68725 -14.92903 -14.76349 -14.57755 -14.40649 -13.68934 -13.29577 -13.03904 -12.91041 -12.49047 -12.47205 -12.39572 -12.19058 -12.13892 -11.99030 -11.85198 -11.51179 -11.30696 -10.78854 -10.25141 -10.16301 -8.64688 -6.42455 0.08009 1.32461 1.39048 1.48695 1.51925 1.78395 2.02000 2.03675 2.53869 2.92169 3.41634 3.83403 4.06339 4.16706 4.29284 4.42262 4.58167 4.78962 4.88959 4.91206 4.99429 5.06598 5.11218 5.11615 5.19253 5.29846 5.50189 5.52377 5.54174 5.69194 5.96922 6.41835 6.79541 6.96431 7.54346 8.55056 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.057236 B = 0.005115 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.085231 B = 5472.834283 C = 5770.845217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.016 3.984 3 C -0.131 4.131 4 C -0.138 4.138 5 C 0.038 3.962 6 C -0.157 4.157 7 C -0.013 4.013 8 C 0.464 3.536 9 O -0.562 6.562 10 O -0.232 6.232 11 C -0.422 4.422 12 H 0.088 0.912 13 C 0.001 3.999 14 N -0.895 5.895 15 Si 1.021 2.979 16 H -0.260 1.260 17 H -0.259 1.259 18 H -0.260 1.260 19 N -0.367 5.367 20 H 0.455 0.545 21 N -0.273 5.273 22 H 0.046 0.954 23 H 0.088 0.912 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.171 0.829 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.737 8.051 -11.641 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.015 3.985 3 C -0.188 4.188 4 C -0.195 4.195 5 C -0.120 4.120 6 C -0.186 4.186 7 C -0.140 4.140 8 C 0.311 3.689 9 O -0.459 6.459 10 O -0.140 6.140 11 C -0.497 4.497 12 H 0.106 0.894 13 C -0.200 4.200 14 N -0.531 5.531 15 Si 0.839 3.161 16 H -0.184 1.184 17 H -0.183 1.183 18 H -0.184 1.184 19 N -0.083 5.083 20 H 0.302 0.698 21 N -0.106 5.106 22 H 0.066 0.934 23 H 0.107 0.893 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.189 0.811 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.428 8.864 -11.085 14.868 hybrid contribution 0.312 -1.525 0.923 1.810 sum -4.116 7.338 -10.162 13.193 Atomic orbital electron populations 1.21872 0.92207 1.02471 1.02775 1.19108 0.96240 0.95031 0.88158 1.21750 1.00727 0.93779 1.02592 1.21894 1.00939 1.00691 0.96019 1.22448 1.02328 0.90859 0.96322 1.22110 1.04391 0.97687 0.94391 1.20788 1.11013 0.84699 0.97459 1.20118 0.79206 0.87859 0.81712 1.90651 1.53528 1.33923 1.67756 1.83897 1.66657 1.35693 1.27726 1.21512 1.44281 0.82825 1.01071 0.89400 1.26599 0.94108 1.04342 0.94993 1.70024 1.38103 1.30346 1.14671 0.84636 0.79609 0.74315 0.77545 1.18440 1.18269 1.18443 1.43753 1.45553 1.02172 1.16868 0.69847 1.73056 1.17237 1.19930 1.00426 0.93435 0.89273 0.92512 0.93433 0.89828 0.93012 0.92193 0.89310 0.93221 0.81125 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.46 71.98 0.61 -1.92 16 2 C 0.02 0.36 0.96 -52.93 -0.05 0.31 16 3 C -0.13 -2.57 8.04 71.98 0.58 -1.99 16 4 C -0.14 -2.52 8.20 71.98 0.59 -1.93 16 5 C 0.04 1.17 5.65 43.03 0.24 1.42 16 6 C -0.16 -5.58 10.13 22.68 0.23 -5.35 16 7 C -0.01 -0.54 7.21 40.74 0.29 -0.24 16 8 C 0.46 24.32 7.88 70.10 0.55 24.87 16 9 O -0.56 -31.61 16.17 19.52 0.32 -31.29 16 10 O -0.23 -13.53 9.75 10.53 0.10 -13.43 16 11 C -0.42 -25.14 9.65 67.96 0.66 -24.49 16 12 H 0.09 5.29 6.86 -2.91 -0.02 5.27 16 13 C 0.00 0.06 5.50 84.89 0.47 0.53 16 14 N -0.90 -51.12 13.67 21.63 0.30 -50.83 16 15 Si 1.02 42.13 29.55 68.60 2.03 44.16 16 16 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 17 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 19 N -0.37 -13.76 6.94 -48.03 -0.33 -14.10 16 20 H 0.45 16.21 8.96 -220.01 -1.97 14.24 16 21 N -0.27 -9.24 11.47 -47.52 -0.55 -9.79 16 22 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 24 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.11 8.08 -2.39 -0.02 1.09 16 28 H 0.06 1.12 7.60 -2.38 -0.02 1.10 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.17 5.53 7.79 -2.91 -0.02 5.50 16 32 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -69.18 285.13 5.19 -63.99 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -0.84 Total: 20.08 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 4.17 Total: -8.79 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -0.58 Total: -74.71 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: 0.42 Total: -44.72 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -69.18 5.19 -63.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919323383.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.297 kcal (2) G-P(sol) polarization free energy of solvation -69.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds